Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_I16
(486 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9Y3C8|UFC1_HUMAN Ufm1-conjugating enzyme 1 (Ubiquitin-f... 278 4e-75
sp|Q5E953|UFC1_BOVIN Ufm1-conjugating enzyme 1 (Ubiquitin-f... 278 4e-75
sp|Q6BBI8|UFC1_RAT Ufm1-conjugating enzyme 1 (Ubiquitin-fol... 276 2e-74
sp|Q9CR09|UFC1_MOUSE Ufm1-conjugating enzyme 1 (Ubiquitin-f... 275 5e-74
sp|Q03598|UFC1_CAEEL Probable Ufm1-conjugating enzyme (Ubiq... 266 1e-71
sp|Q9CMX6|Y674_PASMU Hypothetical protein PM0674 precursor 33 0.35
sp|P87164|SEF1_KLULA Suppressor protein SEF1 31 1.3
sp|P53236|RSC1_YEAST Chromatin structure remodeling complex... 30 2.3
sp|Q98QU6|ATPE_MYCPU ATP synthase epsilon chain (ATP syntha... 30 3.0
sp|Q00657|CSPG4_RAT Chondroitin sulfate proteoglycan 4 prec... 29 5.0
>sp|Q9Y3C8|UFC1_HUMAN Ufm1-conjugating enzyme 1 (Ubiquitin-fold modifier-conjugating
enzyme 1)
Length = 167
Score = 278 bits (712), Expect = 4e-75
Identities = 120/158 (75%), Positives = 142/158 (89%)
Frame = +3
Query: 6 TKKTLAAIPLLKTKAGPRDGDLWIQRLKEEYQSLIQYVQNNKEADNDWFRLESNAEGTRW 185
T++ ++ IP+LKT AGPRD +LW+QRLKEEYQSLI+YV+NNK ADNDWFRLESN EGTRW
Sbjct: 6 TRRVVSEIPVLKTNAGPRDRELWVQRLKEEYQSLIRYVENNKNADNDWFRLESNKEGTRW 65
Query: 186 FGTCWYIHEMKKYEFDVNFDIPVAYPSTNPEIVLPELDGKTAKMYRGGKICLTEHFKPLW 365
FG CWYIH++ KYEFD+ FDIP+ YP+T PEI +PELDGKTAKMYRGGKICLT+HFKPLW
Sbjct: 66 FGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVPELDGKTAKMYRGGKICLTDHFKPLW 125
Query: 366 SRNVPKFGIGHAMALGLGPWLAVEIPDMISKGIIKDKD 479
+RNVPKFG+ H MALGLGPWLAVEIPD+I KG+I+ K+
Sbjct: 126 ARNVPKFGLAHLMALGLGPWLAVEIPDLIQKGVIQHKE 163
>sp|Q5E953|UFC1_BOVIN Ufm1-conjugating enzyme 1 (Ubiquitin-fold modifier-conjugating
enzyme 1)
Length = 167
Score = 278 bits (712), Expect = 4e-75
Identities = 120/158 (75%), Positives = 142/158 (89%)
Frame = +3
Query: 6 TKKTLAAIPLLKTKAGPRDGDLWIQRLKEEYQSLIQYVQNNKEADNDWFRLESNAEGTRW 185
T++ ++ IP+LKT AGPRD +LW+QRLKEEYQSLI+YV+NNK ADNDWFRLESN EGTRW
Sbjct: 6 TRRVVSEIPVLKTNAGPRDRELWVQRLKEEYQSLIRYVENNKNADNDWFRLESNKEGTRW 65
Query: 186 FGTCWYIHEMKKYEFDVNFDIPVAYPSTNPEIVLPELDGKTAKMYRGGKICLTEHFKPLW 365
FG CWYIH++ KYEFD+ FDIP+ YP+T PEI +PELDGKTAKMYRGGKICLT+HFKPLW
Sbjct: 66 FGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVPELDGKTAKMYRGGKICLTDHFKPLW 125
Query: 366 SRNVPKFGIGHAMALGLGPWLAVEIPDMISKGIIKDKD 479
+RNVPKFG+ H MALGLGPWLAVEIPD+I KG+I+ K+
Sbjct: 126 ARNVPKFGLAHLMALGLGPWLAVEIPDLIQKGVIQHKE 163
>sp|Q6BBI8|UFC1_RAT Ufm1-conjugating enzyme 1 (Ubiquitin-fold modifier-conjugating
enzyme 1)
Length = 167
Score = 276 bits (705), Expect = 2e-74
Identities = 118/158 (74%), Positives = 141/158 (89%)
Frame = +3
Query: 6 TKKTLAAIPLLKTKAGPRDGDLWIQRLKEEYQSLIQYVQNNKEADNDWFRLESNAEGTRW 185
T++ ++ IP+LKT AGPRD +LW+QRLKEEYQSLI+YV+NNK ADNDWFRLESN EGTRW
Sbjct: 6 TRRVVSEIPVLKTNAGPRDRELWVQRLKEEYQSLIRYVENNKNADNDWFRLESNKEGTRW 65
Query: 186 FGTCWYIHEMKKYEFDVNFDIPVAYPSTNPEIVLPELDGKTAKMYRGGKICLTEHFKPLW 365
FG CWYIH+ KYEFD+ F+IP+ YP+T PEI +PELDGKTAKMYRGGKICLT+HFKPLW
Sbjct: 66 FGKCWYIHDFLKYEFDIEFEIPITYPTTAPEIAVPELDGKTAKMYRGGKICLTDHFKPLW 125
Query: 366 SRNVPKFGIGHAMALGLGPWLAVEIPDMISKGIIKDKD 479
+RNVPKFG+ H MALGLGPWLAVE+PD+I KG+I+ K+
Sbjct: 126 ARNVPKFGLAHLMALGLGPWLAVEVPDLIQKGVIQHKE 163
>sp|Q9CR09|UFC1_MOUSE Ufm1-conjugating enzyme 1 (Ubiquitin-fold modifier-conjugating
enzyme 1)
Length = 167
Score = 275 bits (702), Expect = 5e-74
Identities = 117/158 (74%), Positives = 141/158 (89%)
Frame = +3
Query: 6 TKKTLAAIPLLKTKAGPRDGDLWIQRLKEEYQSLIQYVQNNKEADNDWFRLESNAEGTRW 185
T++ ++ IP+LKT AGPRD +LW+QRLKEEYQSLI+YV+NNK +DNDWFRLESN EGTRW
Sbjct: 6 TRRVVSEIPVLKTNAGPRDRELWVQRLKEEYQSLIRYVENNKNSDNDWFRLESNKEGTRW 65
Query: 186 FGTCWYIHEMKKYEFDVNFDIPVAYPSTNPEIVLPELDGKTAKMYRGGKICLTEHFKPLW 365
FG CWYIH+ KYEFD+ F+IP+ YP+T PEI +PELDGKTAKMYRGGKICLT+HFKPLW
Sbjct: 66 FGKCWYIHDFLKYEFDIEFEIPITYPTTAPEIAVPELDGKTAKMYRGGKICLTDHFKPLW 125
Query: 366 SRNVPKFGIGHAMALGLGPWLAVEIPDMISKGIIKDKD 479
+RNVPKFG+ H MALGLGPWLAVE+PD+I KG+I+ K+
Sbjct: 126 ARNVPKFGLAHLMALGLGPWLAVEVPDLIQKGVIQHKE 163
>sp|Q03598|UFC1_CAEEL Probable Ufm1-conjugating enzyme (Ubiquitin-fold
modifier-conjugating enzyme)
Length = 162
Score = 266 bits (681), Expect = 1e-71
Identities = 118/157 (75%), Positives = 133/157 (84%)
Frame = +3
Query: 6 TKKTLAAIPLLKTKAGPRDGDLWIQRLKEEYQSLIQYVQNNKEADNDWFRLESNAEGTRW 185
TK +L AIPL KTKA PRDGDLWI+RLKEEY+++I VQNNK+ D DWF+LESN GT+W
Sbjct: 5 TKSSLKAIPLCKTKASPRDGDLWIERLKEEYEAIIAAVQNNKDCDRDWFQLESNERGTKW 64
Query: 186 FGTCWYIHEMKKYEFDVNFDIPVAYPSTNPEIVLPELDGKTAKMYRGGKICLTEHFKPLW 365
FG CWY H M KYEFDV FDIP+ YP T PEI LPELDGKTAKMYRGGKICL+EHFKPLW
Sbjct: 65 FGKCWYFHNMVKYEFDVEFDIPITYPVTAPEIALPELDGKTAKMYRGGKICLSEHFKPLW 124
Query: 366 SRNVPKFGIGHAMALGLGPWLAVEIPDMISKGIIKDK 476
+RN PKFGI HA ALGLGPW+AVEIPD+I KG+I+ K
Sbjct: 125 ARNTPKFGIAHAFALGLGPWMAVEIPDLIEKGLIQPK 161
>sp|Q9CMX6|Y674_PASMU Hypothetical protein PM0674 precursor
Length = 230
Score = 33.1 bits (74), Expect = 0.35
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +3
Query: 213 MKKYEFDVNFDIPVAYPSTNPEIVLPELDGKTAK-MYRGGKICLTE 347
+K +E+ N D +AY ST PE++ + +G+ AK Y+ GK+ +
Sbjct: 57 LKPFEYIHNQDHYIAYLSTQPELIKVQKNGQLAKFFYQAGKVSFVQ 102
>sp|P87164|SEF1_KLULA Suppressor protein SEF1
Length = 1087
Score = 31.2 bits (69), Expect = 1.3
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 153 RLESNAEGTRWFGTCWYIHEMKKYEFDVNFDIPVA 257
R+ S+ GT ++ W +HE ++ + D N+D A
Sbjct: 721 RMRSHLTGTLFYDLVWCVHEARRRQMDPNYDAEAA 755
>sp|P53236|RSC1_YEAST Chromatin structure remodeling complex protein RSC1 (Remodel the
structure of chromatin complex subunit RSC1)
Length = 928
Score = 30.4 bits (67), Expect = 2.3
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +3
Query: 126 NKEADNDWFRLESNAEGTRWFGTCWY 203
NK FRL S +G +W CWY
Sbjct: 385 NKPIVGQIFRLWSTTDGNKWLNACWY 410
>sp|Q98QU6|ATPE_MYCPU ATP synthase epsilon chain (ATP synthase F1 sector epsilon subunit)
Length = 141
Score = 30.0 bits (66), Expect = 3.0
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = +3
Query: 66 DLWIQRLKEEYQSLIQYVQNNKEADNDWFRLE 161
D+ I++ + E+ L++ + N+K D+D+FR E
Sbjct: 88 DIDIEKARREHDYLVEILSNSKNKDSDYFRNE 119
>sp|Q00657|CSPG4_RAT Chondroitin sulfate proteoglycan 4 precursor (Chondroitin sulfate
proteoglycan NG2) (HSN tumor-specific antigen)
Length = 2326
Score = 29.3 bits (64), Expect = 5.0
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +3
Query: 36 LKTKAGPRDGDLWIQRLKEEYQSLIQYVQNNKEADNDWFRLESNA 170
L+ + P+DG L +E + LI+YV + E D F L +NA
Sbjct: 1410 LQKEDRPQDGTLSTFSWREVEEQLIRYVHDGSETQTDGFILLANA 1454
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,501,695
Number of Sequences: 369166
Number of extensions: 1295481
Number of successful extensions: 4033
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4032
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 2921208590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)