Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_I14
(418 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P12717|ACTM_PISOC Actin, muscle 279 2e-75
sp|O17320|ACT_CRAGI Actin 279 2e-75
sp|P41113|ACT3_PODCA Actin-3 278 2e-75
sp|P41112|ACT1_PODCA Actin-1/2 278 2e-75
sp|P92179|ACTC_BIOGL Actin, cytoplasmic 278 2e-75
sp|P41339|ACTA_LIMPO Actin, acrosomal process isoform (Acti... 278 2e-75
sp|Q964D9|ACTC_HELTI Actin, cytoplasmic 278 2e-75
sp|Q964E0|ACTC_BIOTE Actin, cytoplasmic 278 2e-75
sp|Q964E1|ACTC_BIOOB Actin, cytoplasmic 278 2e-75
sp|Q964E2|ACTC_BIOPF Actin, cytoplasmic 278 2e-75
>sp|P12717|ACTM_PISOC Actin, muscle
Length = 376
Score = 279 bits (713), Expect = 2e-75
Identities = 133/135 (98%), Positives = 134/135 (99%)
Frame = -3
Query: 407 MSDEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 228
M DEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 227 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 48
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 47 TQIMFETFNAPAMYV 3
TQIMFETFN+PAMYV
Sbjct: 121 TQIMFETFNSPAMYV 135
>sp|O17320|ACT_CRAGI Actin
Length = 376
Score = 279 bits (713), Expect = 2e-75
Identities = 132/135 (97%), Positives = 134/135 (99%)
Frame = -3
Query: 407 MSDEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 228
M DED+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MGDEDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 227 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 48
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 47 TQIMFETFNAPAMYV 3
TQIMFETFN+PAMYV
Sbjct: 121 TQIMFETFNSPAMYV 135
>sp|P41113|ACT3_PODCA Actin-3
Length = 376
Score = 278 bits (712), Expect = 2e-75
Identities = 132/135 (97%), Positives = 135/135 (100%)
Frame = -3
Query: 407 MSDEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 228
M+D+DVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MADDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 227 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 48
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 47 TQIMFETFNAPAMYV 3
TQIMFETFN+PAMYV
Sbjct: 121 TQIMFETFNSPAMYV 135
>sp|P41112|ACT1_PODCA Actin-1/2
Length = 376
Score = 278 bits (712), Expect = 2e-75
Identities = 132/135 (97%), Positives = 135/135 (100%)
Frame = -3
Query: 407 MSDEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 228
M+D+DVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MADDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 227 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 48
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 47 TQIMFETFNAPAMYV 3
TQIMFETFN+PAMYV
Sbjct: 121 TQIMFETFNSPAMYV 135
>sp|P92179|ACTC_BIOGL Actin, cytoplasmic
Length = 376
Score = 278 bits (712), Expect = 2e-75
Identities = 133/135 (98%), Positives = 133/135 (98%)
Frame = -3
Query: 407 MSDEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 228
M DEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 227 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 48
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 47 TQIMFETFNAPAMYV 3
TQIMFETFN PAMYV
Sbjct: 121 TQIMFETFNTPAMYV 135
>sp|P41339|ACTA_LIMPO Actin, acrosomal process isoform (Actin-5)
Length = 376
Score = 278 bits (712), Expect = 2e-75
Identities = 133/135 (98%), Positives = 133/135 (98%)
Frame = -3
Query: 407 MSDEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 228
M DEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 227 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 48
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 47 TQIMFETFNAPAMYV 3
TQIMFETFN PAMYV
Sbjct: 121 TQIMFETFNTPAMYV 135
>sp|Q964D9|ACTC_HELTI Actin, cytoplasmic
Length = 376
Score = 278 bits (712), Expect = 2e-75
Identities = 133/135 (98%), Positives = 133/135 (98%)
Frame = -3
Query: 407 MSDEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 228
M DEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 227 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 48
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 47 TQIMFETFNAPAMYV 3
TQIMFETFN PAMYV
Sbjct: 121 TQIMFETFNTPAMYV 135
>sp|Q964E0|ACTC_BIOTE Actin, cytoplasmic
Length = 376
Score = 278 bits (712), Expect = 2e-75
Identities = 133/135 (98%), Positives = 133/135 (98%)
Frame = -3
Query: 407 MSDEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 228
M DEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 227 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 48
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 47 TQIMFETFNAPAMYV 3
TQIMFETFN PAMYV
Sbjct: 121 TQIMFETFNTPAMYV 135
>sp|Q964E1|ACTC_BIOOB Actin, cytoplasmic
Length = 376
Score = 278 bits (712), Expect = 2e-75
Identities = 133/135 (98%), Positives = 133/135 (98%)
Frame = -3
Query: 407 MSDEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 228
M DEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 227 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 48
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 47 TQIMFETFNAPAMYV 3
TQIMFETFN PAMYV
Sbjct: 121 TQIMFETFNTPAMYV 135
>sp|Q964E2|ACTC_BIOPF Actin, cytoplasmic
Length = 376
Score = 278 bits (712), Expect = 2e-75
Identities = 133/135 (98%), Positives = 133/135 (98%)
Frame = -3
Query: 407 MSDEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 228
M DEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDEDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 227 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 48
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 47 TQIMFETFNAPAMYV 3
TQIMFETFN PAMYV
Sbjct: 121 TQIMFETFNTPAMYV 135
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,957,670
Number of Sequences: 369166
Number of extensions: 1098090
Number of successful extensions: 4258
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4189
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 1952582385
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)