Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_I11-1
(285 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P41815|BAP3_YEAST Valine amino-acid permease (Branched-c... 28 6.5
sp|Q46266|PFL_CLOPA Formate acetyltransferase (Pyruvate for... 28 8.5
sp|Q94166|HM33_CAEEL Homeobox protein ceh-33 28 8.5
>sp|P41815|BAP3_YEAST Valine amino-acid permease (Branched-chain amino-acid permease 3)
Length = 604
Score = 28.1 bits (61), Expect = 6.5
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = -1
Query: 204 DFMSYSM**LFINGAQNITAFHYVFFALEWYMHFTGISSVGSN*NLIFNTC 52
+ ++ SM + N N F +F+ ++HF G+ + G IFN+C
Sbjct: 187 ELITSSMTVKYWNDTINADVFIVIFYVFLLFIHFFGVKAYGET-EFIFNSC 236
>sp|Q46266|PFL_CLOPA Formate acetyltransferase (Pyruvate formate-lyase)
Length = 740
Score = 27.7 bits (60), Expect = 8.5
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +1
Query: 55 CVENQILVGSYRRDTGEVHIPFKGKEYIVKCC 150
C E IL S + + ++ P G +Y + CC
Sbjct: 375 CAEMSILTDSIQYENDDIMRPIYGDDYAIACC 406
>sp|Q94166|HM33_CAEEL Homeobox protein ceh-33
Length = 261
Score = 27.7 bits (60), Expect = 8.5
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -3
Query: 274 DQFIKNEIIEK*QFFINSRFIKSRFHELFHVVIIHQRCTEHH 149
D+ N+ I K Q F+ F + F EL+ ++ H +EHH
Sbjct: 50 DEMRNNQYILKAQAFL--AFHSNNFKELYRIIESHHFASEHH 89
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,443,952
Number of Sequences: 369166
Number of extensions: 593091
Number of successful extensions: 1090
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 68,354,980
effective HSP length: 64
effective length of database: 56,531,940
effective search space used: 1695958200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)