Planarian EST Database


Dr_sW_014_I10

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_014_I10
         (359 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P23785|GRN_RAT  Granulins precursor [Contains: Acrogranin...    39   0.004
sp|P28799|GRN_HUMAN  Granulins precursor (Proepithelin) (PEP...    37   0.011
sp|P28798|GRN_MOUSE  Granulins precursor (Acrogranin) (Proep...    37   0.018
sp|P28797|GRN_CAVPO  Granulins precursor (Proepithelin) (PEP...    36   0.031
sp|P80930|ENA1_HORSE  Antimicrobial peptide eNAP-1                 35   0.040
sp|P34504|YMV2_CAEEL  Hypothetical protein K04H4.2 precursor       33   0.20 
sp|P15265|MCSP_MOUSE  Sperm mitochondrial associated cystein...    30   1.3  
sp|P07987|GUX2_TRIRE  Exoglucanase II precursor (Exocellobio...    30   1.3  
sp|Q13615|MTMR3_HUMAN  Myotubularin-related protein 3 (FYVE ...    30   1.7  
sp|Q8FDN6|MASZ_ECOL6  Malate synthase G                            29   2.9  
>sp|P23785|GRN_RAT Granulins precursor [Contains: Acrogranin; Granulin-1 (Granulin G);
           Granulin-2 (Granulin F); Granulin-3 (Granulin B)
           (Epithelin-2); Granulin-4 (Granulin A) (Epithelin-1);
           Granulin-5 (Granulin C); Granulin-6 (Granulin D);
           Granulin-7 (Granulin E)]
          Length = 588

 Score = 38.9 bits (89), Expect = 0.004
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
 Frame = +2

Query: 119 SFKSSLWNRWCPGNYYCHSSQTCCAPGR----CCPYPYVNCCPGG 241
           +F S + N  C   ++CH +Q+CC   +    CCPY    CC  G
Sbjct: 506 TFGSKVGNVECGAGHFCHDNQSCCKDSQGGWACCPYVKGVCCRDG 550

 Score = 33.5 bits (75), Expect = 0.15
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 5/33 (15%)
 Frame = +2

Query: 149 CPGNYY-CHSSQTCC----APGRCCPYPYVNCC 232
           CPG+ + C  S TCC        CCP P  +CC
Sbjct: 125 CPGSQFECPDSATCCIMIDGSWGCCPMPQASCC 157

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
 Frame = +2

Query: 71  PQVVKVKASKSIVTKSSFKSSLWNRWCPGNYYCHSSQTCCAPGR----CCPYPYVNCC 232
           P + KV AS S+      K+ +    C     C S+ TCC        CCP P   CC
Sbjct: 340 PWMKKVTASLSLPDPQILKNDVP---CDDFSSCPSNNTCCRLSSGDWGCCPMPEAVCC 394
>sp|P28799|GRN_HUMAN Granulins precursor (Proepithelin) (PEPI) [Contains: Acrogranin;
           Paragranulin; Granulin-1 (Granulin G); Granulin-2
           (Granulin F); Granulin-3 (Granulin B); Granulin-4
           (Granulin A); Granulin-5 (Granulin C); Granulin-6
           (Granulin D); Granulin-7 (Granulin E)]
          Length = 593

 Score = 37.4 bits (85), Expect = 0.011
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
 Frame = +2

Query: 149 CPGNYYCHSSQTCCAPGR----CCPYPYVNCC 232
           C   ++CH +QTCC   R    CCPY    CC
Sbjct: 521 CGEGHFCHDNQTCCRDNRQGWACCPYRQGVCC 552

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 12/45 (26%)
 Frame = +2

Query: 149 CPGNYY-CHSSQTCCA----PGRCCPYPY-------VNCCPGGLF 247
           CP + + C    TCC        CCP P        V+CCP G F
Sbjct: 126 CPDSQFECPDFSTCCVMVDGSWGCCPMPQASCCEDRVHCCPHGAF 170

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 13/32 (40%), Positives = 13/32 (40%), Gaps = 4/32 (12%)
 Frame = +2

Query: 149 CPGNYYCHSSQTCC----APGRCCPYPYVNCC 232
           C     C SS TCC        CCP P   CC
Sbjct: 366 CDNVSSCPSSDTCCQLTSGEWGCCPIPEAVCC 397
>sp|P28798|GRN_MOUSE Granulins precursor (Acrogranin) (Proepithelin) (PEPI) (PC
           cell-derived growth factor) (PCDGF) [Contains: Granulin
           1; Granulin 2; Granulin 3; Granulin 4; Granulin 5;
           Granulin 6; Granulin 7]
          Length = 589

 Score = 36.6 bits (83), Expect = 0.018
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 11/42 (26%)
 Frame = +2

Query: 149 CPGNYYCHSSQTCCAPG----RCCPY-------PYVNCCPGG 241
           C   ++CH +QTCC        CCPY          +CCPGG
Sbjct: 517 CGEGHFCHDNQTCCKDSAGVWACCPYLKGVCCRDGRHCCPGG 558

 Score = 33.5 bits (75), Expect = 0.15
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 5/33 (15%)
 Frame = +2

Query: 149 CPGNYY-CHSSQTCC----APGRCCPYPYVNCC 232
           CPG+ + C  S TCC        CCP P  +CC
Sbjct: 125 CPGSQFECPDSATCCIMVDGSWGCCPMPQASCC 157
>sp|P28797|GRN_CAVPO Granulins precursor (Proepithelin) (PEPI) [Contains: Acrogranin;
           Granulin-1; Granulin-2; Granulin-3; Granulin-4;
           Granulin-5; Granulin-6; Granulin-7]
          Length = 591

 Score = 35.8 bits (81), Expect = 0.031
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
 Frame = +2

Query: 149 CPGNYYCHSSQTCCAPGR----CCPYPYVNCC 232
           C   ++CH  QTCC   R    CCP+    CC
Sbjct: 518 CGDRHFCHDEQTCCRDSRGGWACCPFHQGVCC 549

 Score = 34.3 bits (77), Expect = 0.090
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 11/58 (18%)
 Frame = +2

Query: 95  SKSIVTKSSFKSSLWNRWCPGNYYCHSSQTCCA--PGR--CCPYP-------YVNCCP 235
           +K+++TK     ++W+  C     C   QTCC    G+  CCP+P       +V+CCP
Sbjct: 266 AKTLLTKLP-SWTVWDVECDQEVSCPEGQTCCRLQSGKWGCCPFPKAVCCEDHVHCCP 322

 Score = 33.1 bits (74), Expect = 0.20
 Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 5/33 (15%)
 Frame = +2

Query: 149 CPGNYY-CHSSQTCC----APGRCCPYPYVNCC 232
           CPG  + C  S TCC        CCP P  +CC
Sbjct: 112 CPGGEFECPDSSTCCHMLDGSWGCCPMPQASCC 144
>sp|P80930|ENA1_HORSE Antimicrobial peptide eNAP-1
          Length = 46

 Score = 35.4 bits (80), Expect = 0.040
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
 Frame = +2

Query: 149 CPGNYYCHSSQTCCAPGR----CCPYPYVNCC 232
           C   ++CH  QTCC   +    CCPY    CC
Sbjct: 4   CGEGHFCHDXQTCCRASQGGXACCPYSQGVCC 35
>sp|P34504|YMV2_CAEEL Hypothetical protein K04H4.2 precursor
          Length = 967

 Score = 33.1 bits (74), Expect = 0.20
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +2

Query: 158 NYYCHSSQTCCAPGRCCPYPYVNCCPGG 241
           +YYC S  TC     CCP   +N CP G
Sbjct: 550 SYYCGSGYTCTTGNICCP---INSCPNG 574
>sp|P15265|MCSP_MOUSE Sperm mitochondrial associated cysteine-rich protein
          Length = 143

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = +2

Query: 149 CPGNYYCHSSQTCCAPGRCCPYPYVNCCP 235
           CP    C     CC    CCP P   CCP
Sbjct: 21  CPPKPCCPQKPPCCPKSPCCP-PKSPCCP 48
>sp|P07987|GUX2_TRIRE Exoglucanase II precursor (Exocellobiohydrolase II) (CBHII)
           (1,4-beta-cellobiohydrolase)
          Length = 471

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = +2

Query: 128 SSLWNRWCPGNYYCHSSQTCCAPGRCCPYP---YVNCCPG 238
           SS+W + C G  +  S  TCCA G  C Y    Y  C PG
Sbjct: 28  SSVWGQ-CGGQNW--SGPTCCASGSTCVYSNDYYSQCLPG 64
>sp|Q13615|MTMR3_HUMAN Myotubularin-related protein 3 (FYVE domain-containing dual
            specificity protein phosphatase 1) (FYVE-DSP1) (Zinc
            finger FYVE domain containing protein 10)
          Length = 1198

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = -1

Query: 320  IKRSLSIIICNSVHIHNNNIHFDSKIIHQDSNLRKGMDNICQVHNKFVKSDN-SNFLDTI 144
            + R LS + C+S H+H+ N+H   K +H  S       +  Q     +  D  S + DTI
Sbjct: 970  LSRQLSAMSCSSAHLHSRNLH--HKWLHSHSGRPSATSSPDQPSRSHLDDDGMSVYTDTI 1027
>sp|Q8FDN6|MASZ_ECOL6 Malate synthase G
          Length = 723

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = -1

Query: 278 IHNNNIHFDSKIIHQDSNLRKGMDNICQVHNKFVKSDNSNFLDTIDSITMI 126
           + NN +H + +I   D+N R G D+   +++  V++  S  LD  DS+  +
Sbjct: 231 LKNNGLHIELQI---DANGRIGKDDSAHINDVIVEAAISTILDCEDSVAAV 278
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,933,557
Number of Sequences: 369166
Number of extensions: 531981
Number of successful extensions: 2080
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2058
length of database: 68,354,980
effective HSP length: 87
effective length of database: 52,283,035
effective search space used: 1673057120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)