Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_I08
(891 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9QZ08|NAGK_MOUSE N-acetylglucosamine kinase (GlcNAc kin... 148 2e-35
sp|Q9UJ70|NAGK_HUMAN N-acetylglucosamine kinase (GlcNAc kin... 143 7e-34
sp|P20261|LIP1_CANRU Lipase 1 precursor 30 6.9
sp|Q9A5F0|PURL_CAUCR Phosphoribosylformylglycinamidine synt... 30 6.9
sp|Q6AGR0|GLPK_LEIXX Glycerol kinase (ATP:glycerol 3-phosph... 30 9.0
sp|Q6MUM4|KSGA_MYCMS Dimethyladenosine transferase (S-adeno... 30 9.0
sp|Q9KBM8|COBB_BACHD Cobyrinic acid A,C-diamide synthase 30 9.0
>sp|Q9QZ08|NAGK_MOUSE N-acetylglucosamine kinase (GlcNAc kinase)
Length = 343
Score = 148 bits (373), Expect = 2e-35
Identities = 83/253 (32%), Positives = 133/253 (52%), Gaps = 1/253 (0%)
Frame = +2
Query: 5 GVEGGSTATKAIILDRSGHIVSHVSGPHTNINLLGANEMAERIRSLLEECLIKGQRPVNS 184
GVEGG T +K ++L G I++ G TN L+G ++ ERI +++ K
Sbjct: 7 GVEGGGTRSKVLLLSEDGQILAEADGLSTNHWLIGTDQCVERINEMVDRAKQKAGVDPLV 66
Query: 185 RINYLGLSLSGIDTEAHTKLCIDAMLNIWKPGIDHIHVCNDTVGALRTGA-DAGIVLISG 361
+ LGLSLSG + E +L I+ + + + ++ + D G++ T D GIVLISG
Sbjct: 67 PLRSLGLSLSGGEQEDAVRLLIEELRHRFPNLSENYLITTDAAGSIATATPDGGIVLISG 126
Query: 362 TGSNCRLVHKDLTFHRVGGWGNLLGDEGSAYGIVNGGIKKIIDAEEGRIPMETPYSVFKE 541
TGSNCRL++ D + GGWG+++GDEGSAY I + +K + D+ + K+
Sbjct: 127 TGSNCRLINPDGSESGCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGHVKQ 186
Query: 542 ILFKYLKISDIYELIPLYYHNFDKALIANMCPLLAQAAENGDKFCIDLFYEAGYILARLV 721
+F Y ++ D ++ Y +FDK A C +A+ A GD +F +AG +L R V
Sbjct: 187 AMFDYFQVPDRLGILTHLYRDFDKCKFAGFCQKIAEGAHQGDPLSRYIFRKAGEMLGRHV 246
Query: 722 ATMARHCEPAILE 760
+ +P + +
Sbjct: 247 VAVLPEIDPVLFQ 259
>sp|Q9UJ70|NAGK_HUMAN N-acetylglucosamine kinase (GlcNAc kinase)
Length = 344
Score = 143 bits (360), Expect = 7e-34
Identities = 79/253 (31%), Positives = 132/253 (52%), Gaps = 1/253 (0%)
Frame = +2
Query: 5 GVEGGSTATKAIILDRSGHIVSHVSGPHTNINLLGANEMAERIRSLLEECLIKGQRPVNS 184
GVEGG T ++ +++ G I++ G TN L+G ++ ERI ++ K
Sbjct: 7 GVEGGGTRSEVLLVSEDGKILAEADGLSTNHWLIGTDKCVERINEMVNRAKRKAGVDPLV 66
Query: 185 RINYLGLSLSGIDTEAHTKLCIDAMLNIWKPGIDHIHVCNDTVGALRTGA-DAGIVLISG 361
+ LGLSLSG D E ++ I+ + + + + + D G++ T D G+VLISG
Sbjct: 67 PLRSLGLSLSGGDQEDAGRILIEELRDRFPYLSESYLITTDAAGSIATATPDGGVVLISG 126
Query: 362 TGSNCRLVHKDLTFHRVGGWGNLLGDEGSAYGIVNGGIKKIIDAEEGRIPMETPYSVFKE 541
TGSNCRL++ D + GGWG+++GDEGSAY I + +K + D+ + K+
Sbjct: 127 TGSNCRLINPDGSESGCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYVKQ 186
Query: 542 ILFKYLKISDIYELIPLYYHNFDKALIANMCPLLAQAAENGDKFCIDLFYEAGYILARLV 721
+F Y ++ D ++ Y +FDK A C +A+ A+ GD +F +AG +L R +
Sbjct: 187 AMFHYFQVPDRLGILTHLYRDFDKCRFAGFCRKIAEGAQQGDPLSRYIFRKAGEMLGRHI 246
Query: 722 ATMARHCEPAILE 760
+ +P + +
Sbjct: 247 VAVLPEIDPVLFQ 259
>sp|P20261|LIP1_CANRU Lipase 1 precursor
Length = 549
Score = 30.4 bits (67), Expect = 6.9
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 380 LVHKDLTFHRVGGWGNLLGDEGSAYGIVNGGIK 478
++H + + RV WG L GDE A G N G+K
Sbjct: 164 IIHVSVNY-RVSSWGFLAGDEIKAEGSANAGLK 195
>sp|Q9A5F0|PURL_CAUCR Phosphoribosylformylglycinamidine synthase II (FGAM synthase II)
Length = 739
Score = 30.4 bits (67), Expect = 6.9
Identities = 15/25 (60%), Positives = 16/25 (64%)
Frame = +2
Query: 293 HVCNDTVGALRTGADAGIVLISGTG 367
HV DT+ TG DAGIV I GTG
Sbjct: 429 HVMADTLEDSATGCDAGIVRIHGTG 453
>sp|Q6AGR0|GLPK_LEIXX Glycerol kinase (ATP:glycerol 3-phosphotransferase) (Glycerokinase)
(GK)
Length = 506
Score = 30.0 bits (66), Expect = 9.0
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +2
Query: 2 MGVEGGSTATKAIILDRSGHIVSHVSGPHTNI 97
+ ++ G+T+T+AII D+SG IVS H I
Sbjct: 6 VAIDQGTTSTRAIIFDKSGSIVSTGQLEHEQI 37
>sp|Q6MUM4|KSGA_MYCMS Dimethyladenosine transferase (S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA
dimethylase) (High level kasugamycin resistance protein
ksgA) (Kasugamycin dimethyltransferase)
Length = 266
Score = 30.0 bits (66), Expect = 9.0
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +2
Query: 488 DAEEGRIPMETPYSVFKEILFKYLKISDI 574
D E+ I TPY + EILFK L+ISD+
Sbjct: 96 DYEKISIISNTPYYITSEILFKTLQISDL 124
>sp|Q9KBM8|COBB_BACHD Cobyrinic acid A,C-diamide synthase
Length = 465
Score = 30.0 bits (66), Expect = 9.0
Identities = 10/35 (28%), Positives = 23/35 (65%)
Frame = +2
Query: 155 LIKGQRPVNSRINYLGLSLSGIDTEAHTKLCIDAM 259
++KG + +N ++ G+ L+G +E H ++C +A+
Sbjct: 132 VVKGFQQLNEKVKIAGVILNGAGSERHAEMCSEAI 166
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,745,041
Number of Sequences: 369166
Number of extensions: 2319377
Number of successful extensions: 5990
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5984
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8934348180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)