Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_H15
(623 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q5RE33|DP1_PONPY Polyposis locus protein 1 homolog 146 5e-35
sp|Q60870|DP1_MOUSE Polyposis locus protein 1 homolog (TB2 ... 144 2e-34
sp|Q4P0H0|YOP1_USTMA Protein YOP1 102 8e-22
sp|Q4WTW3|YOP1_ASPFU Protein yopA 101 2e-21
sp|Q871R7|YOP1_NEUCR Protein yop-1 100 2e-21
sp|Q51VY4|YOP1_MAGGR Protein YOP1 98 2e-20
sp|Q9UU91|YOP1_SCHPO Protein yop1 96 7e-20
sp|Q6CE07|YOP1_YARLI Protein YOP1 95 2e-19
sp|Q6CP93|YOP1_KLULA Protein YOP1 93 5e-19
sp|Q6BWH8|YOP1_DEBHA Protein YOP1 92 8e-19
>sp|Q5RE33|DP1_PONPY Polyposis locus protein 1 homolog
Length = 189
Score = 146 bits (368), Expect = 5e-35
Identities = 69/137 (50%), Positives = 92/137 (67%), Gaps = 3/137 (2%)
Frame = +1
Query: 7 YMAIGLITFVIGYLIFGYAGQFLANFIGFLFPAYWSIKAIETPAKDDDTKWLTYWVVYAA 186
++A+G+I V YL+FGY L N IGF +PAY SIKAIE+P K+DDT+WLTYWVVY
Sbjct: 36 FIALGVIGLVALYLVFGYGASLLCNLIGFGYPAYISIKAIESPNKEDDTQWLTYWVVYGV 95
Query: 187 FSLLESVTDIFLSWIPLYALLKCVFLIYLMVPTKWNGSIYIYYSFIRPYILKNQTKIDQV 366
FS+ E +DIFLSW P Y +LKC FL++ M P+ NG+ +Y IRP+ LK+++++D V
Sbjct: 96 FSIAEFFSDIFLSWFPFYYMLKCGFLLWCMAPSPSNGAELLYKRIIRPFFLKHESQVDSV 155
Query: 367 ---LSKTTNATKDIFTK 408
L T D TK
Sbjct: 156 VKDLKDKAKETADAITK 172
>sp|Q60870|DP1_MOUSE Polyposis locus protein 1 homolog (TB2 protein homolog) (GP106)
Length = 185
Score = 144 bits (362), Expect = 2e-34
Identities = 63/130 (48%), Positives = 91/130 (70%)
Frame = +1
Query: 7 YMAIGLITFVIGYLIFGYAGQFLANFIGFLFPAYWSIKAIETPAKDDDTKWLTYWVVYAA 186
++A+G+I V YL+FGY L N IGF +PAY S+KAIE+P KDDDT+WLTYWVVY
Sbjct: 32 FIALGVIGLVALYLVFGYGASLLCNLIGFGYPAYISMKAIESPNKDDDTQWLTYWVVYGV 91
Query: 187 FSLLESVTDIFLSWIPLYALLKCVFLIYLMVPTKWNGSIYIYYSFIRPYILKNQTKIDQV 366
FS+ E +D+FLSW+P Y +LKC FL++ M P+ NG+ +Y IRP L++++++D V
Sbjct: 92 FSIAEFFSDLFLSWLPFYYMLKCGFLLWCMAPSPANGAEMLYRRIIRPIFLRHESQVDSV 151
Query: 367 LSKTTNATKD 396
+ + K+
Sbjct: 152 VKDVKDKAKE 161
>sp|Q4P0H0|YOP1_USTMA Protein YOP1
Length = 172
Score = 102 bits (254), Expect = 8e-22
Identities = 50/129 (38%), Positives = 75/129 (58%)
Frame = +1
Query: 1 KIYMAIGLITFVIGYLIFGYAGQFLANFIGFLFPAYWSIKAIETPAKDDDTKWLTYWVVY 180
K Y A+G ++ F A FL N +GF PAY+S+KA+E+P DD +WLTYWVV+
Sbjct: 40 KAYAALGAFGIFTLFVFFNIAAGFLTNLLGFFVPAYFSLKALESPQPQDDIQWLTYWVVF 99
Query: 181 AAFSLLESVTDIFLSWIPLYALLKCVFLIYLMVPTKWNGSIYIYYSFIRPYILKNQTKID 360
F+ LE+ +I L +IP Y +K + +++LM+P + G+ +Y IRP L Q +
Sbjct: 100 GLFTFLETFINIVLYYIPWYYTIKTLAIVWLMLP-QTQGAKMVYSRIIRPVFLTTQKTVH 158
Query: 361 QVLSKTTNA 387
Q + T A
Sbjct: 159 QANASTPAA 167
>sp|Q4WTW3|YOP1_ASPFU Protein yopA
Length = 169
Score = 101 bits (251), Expect = 2e-21
Identities = 45/112 (40%), Positives = 73/112 (65%)
Frame = +1
Query: 1 KIYMAIGLITFVIGYLIFGYAGQFLANFIGFLFPAYWSIKAIETPAKDDDTKWLTYWVVY 180
K+Y+ +GL+ + F AG+FL NF GFL P Y+S+ A+ T K DDT+WLTYWVVY
Sbjct: 36 KVYVILGLVGIYTFLVFFNIAGEFLVNFAGFLIPGYYSLNALFTSGKADDTQWLTYWVVY 95
Query: 181 AAFSLLESVTDIFLSWIPLYALLKCVFLIYLMVPTKWNGSIYIYYSFIRPYI 336
A +++ES + W P Y + K V ++++ +P + NG+ +++SF++P +
Sbjct: 96 ALLTVVESAINA-AYWFPFYYIFKFVLILWMSLP-QTNGAQVVFHSFLQPVL 145
>sp|Q871R7|YOP1_NEUCR Protein yop-1
Length = 168
Score = 100 bits (250), Expect = 2e-21
Identities = 47/110 (42%), Positives = 70/110 (63%)
Frame = +1
Query: 1 KIYMAIGLITFVIGYLIFGYAGQFLANFIGFLFPAYWSIKAIETPAKDDDTKWLTYWVVY 180
K Y IGL+ +IF GQ L N GF+ P Y+S+ A+ T +K DDT+WLTYWVV+
Sbjct: 36 KAYAVIGLVALYFFLIIFNLGGQLLTNLAGFVLPGYYSLNALFTASKQDDTQWLTYWVVF 95
Query: 181 AAFSLLESVTDIFLSWIPLYALLKCVFLIYLMVPTKWNGSIYIYYSFIRP 330
+ F+++ES+ + + W P Y K VFL++L +PT + G+ I+ SF+ P
Sbjct: 96 SLFTVIESLISV-VYWFPFYFTFKFVFLLWLSLPT-FKGAETIFRSFLAP 143
>sp|Q51VY4|YOP1_MAGGR Protein YOP1
Length = 170
Score = 97.8 bits (242), Expect = 2e-20
Identities = 48/135 (35%), Positives = 80/135 (59%), Gaps = 4/135 (2%)
Frame = +1
Query: 1 KIYMAIGLITFVIGYLIFGYAGQFLANFIGFLFPAYWSIKAIETPAKDDDTKWLTYWVVY 180
K Y +G++ ++F GQ L N GF PAY+S+ A+ + K+DDT+WLTYWVV+
Sbjct: 36 KAYAVVGVVVLYFFLIVFNLGGQLLTNIAGFGIPAYYSLDALFSANKEDDTQWLTYWVVF 95
Query: 181 AAFSLLESVTDIFLSWIPLYALLKCVFLIYLMVPTKWNGSIYIYYSFIRP----YILKNQ 348
A F+++ES+ + + W P Y + K VFL++L +P + G+ I+ SF+ P Y + ++
Sbjct: 96 AMFTVVESLVSV-VYWFPFYYMFKFVFLLWLSLPA-FKGADIIFRSFLAPTLSRYFVHSR 153
Query: 349 TKIDQVLSKTTNATK 393
+ +K +A K
Sbjct: 154 PASSNLRAKADSAGK 168
>sp|Q9UU91|YOP1_SCHPO Protein yop1
Length = 182
Score = 95.9 bits (237), Expect = 7e-20
Identities = 49/129 (37%), Positives = 79/129 (61%)
Frame = +1
Query: 1 KIYMAIGLITFVIGYLIFGYAGQFLANFIGFLFPAYWSIKAIETPAKDDDTKWLTYWVVY 180
K+Y+ + +L + G L N + F PA++SI AIET K DDT+WLTY++V
Sbjct: 35 KLYVFLTAAGIYALFLFLNWGGFLLTNLLAFAMPAFFSINAIETTNKADDTQWLTYYLVT 94
Query: 181 AAFSLLESVTDIFLSWIPLYALLKCVFLIYLMVPTKWNGSIYIYYSFIRPYILKNQTKID 360
+ +++E + + L ++P+Y LLK +FLI+L +P K+NG+ IY IRPYI + +I
Sbjct: 95 SFLNVIEYWSQLILYYVPVYWLLKAIFLIWLALP-KFNGATIIYRHLIRPYITPHVIRIC 153
Query: 361 QVLSKTTNA 387
+ +S+ A
Sbjct: 154 KSVSRQNAA 162
>sp|Q6CE07|YOP1_YARLI Protein YOP1
Length = 189
Score = 94.7 bits (234), Expect = 2e-19
Identities = 44/116 (37%), Positives = 72/116 (62%), Gaps = 2/116 (1%)
Frame = +1
Query: 1 KIYMAIGLITF--VIGYLIFGYAGQFLANFIGFLFPAYWSIKAIETPAKDDDTKWLTYWV 174
K Y+ +G + F ++ +L G GQ L+N G + P Y+S+ A+ETP K DDT++LTYWV
Sbjct: 36 KSYILLGFVGFYFILIFLNIGGIGQLLSNIAGLVIPGYYSLLALETPGKADDTQYLTYWV 95
Query: 175 VYAAFSLLESVTDIFLSWIPLYALLKCVFLIYLMVPTKWNGSIYIYYSFIRPYILK 342
V+A ++ E + L W+P Y L K FL+Y+ +P ++ G+ +Y + ++P K
Sbjct: 96 VFATLNVFEFWSKAILYWVPFYYLFKTAFLLYIGLP-QYGGAELVYKAIVKPLAQK 150
>sp|Q6CP93|YOP1_KLULA Protein YOP1
Length = 180
Score = 93.2 bits (230), Expect = 5e-19
Identities = 41/111 (36%), Positives = 71/111 (63%), Gaps = 2/111 (1%)
Frame = +1
Query: 7 YMAIGLIT--FVIGYLIFGYAGQFLANFIGFLFPAYWSIKAIETPAKDDDTKWLTYWVVY 180
Y+ +GL+ F++ ++ G G+ L+NF+GF P Y+S+KA++T DDT+ LTYW+V+
Sbjct: 38 YVIVGLVAVYFLLIFINVGGIGEILSNFVGFCIPTYYSLKALKTATSTDDTQLLTYWIVF 97
Query: 181 AAFSLLESVTDIFLSWIPLYALLKCVFLIYLMVPTKWNGSIYIYYSFIRPY 333
+ S++E + L W+P Y K VFL+Y+ +P+ + G+ +Y I P+
Sbjct: 98 SFLSVIEFWSKAILYWVPFYWFFKTVFLLYIAIPS-FGGAQLVYTRLISPF 147
>sp|Q6BWH8|YOP1_DEBHA Protein YOP1
Length = 177
Score = 92.4 bits (228), Expect = 8e-19
Identities = 45/110 (40%), Positives = 70/110 (63%), Gaps = 4/110 (3%)
Frame = +1
Query: 31 FVIGYLIFGYAGQFLANFIGFLFPAYWSIKAIETPAKDDDTKWLTYWVVYAAFSLLESVT 210
FV+ +L G GQ L+N G + P Y+S+ A+E+ DDT+ LTYWVV+A F+++E +
Sbjct: 47 FVLIFLNIGGVGQLLSNIAGLVIPGYFSLLALESTTTSDDTQLLTYWVVFATFNVVEFWS 106
Query: 211 DIFLSWIPLYALLKCVFLIYLMVPTKWNGSIYIYYSFIRP----YILKNQ 348
L WIP Y L K VFL+Y+ +P+ G++ +Y + I+P YI+ N+
Sbjct: 107 KAILYWIPFYYLFKTVFLVYIGIPST-GGAVTVYNAAIKPFSRRYIVNNK 155
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,971,853
Number of Sequences: 369166
Number of extensions: 1649070
Number of successful extensions: 4188
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4170
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 4926080070
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)