Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_G18
(572 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P28006|GAC1_YEAST Protein phosphatase 1 regulatory subun... 32 1.5
sp|Q9YGK4|COLI1_CYPCA Corticotropin-lipotropin I precursor ... 31 1.9
sp|P17544|ATF7_HUMAN Cyclic AMP-dependent transcription fac... 30 3.3
sp|Q5R9C9|ATF7_PONPY Cyclic AMP-dependent transcription fac... 30 3.3
sp|Q9EQZ7|RIMS2_MOUSE Regulating synaptic membrane exocytos... 30 4.3
sp|Q9NZM4|GSCR1_HUMAN Glioma tumor suppressor candidate reg... 30 4.3
sp|Q8R0S1|ATF7_MOUSE Cyclic AMP-dependent transcription fac... 30 4.3
sp|O33558|CHEB3_RHOSH Chemotaxis response regulator protein... 30 4.3
sp|Q8PTT8|ECX1_METMA Probable exosome complex exonuclease 1 29 7.3
sp|Q9NIW4|TRA2_CAERE Sex-determining transformer protein 2 ... 29 7.3
>sp|P28006|GAC1_YEAST Protein phosphatase 1 regulatory subunit GAC1
Length = 793
Score = 31.6 bits (70), Expect = 1.5
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +1
Query: 319 ADARPDLPPGELLQV--DHLLPRPPHQPVPAVQSCRAVSH 432
A ARP P +L++ D L+ RP H P+ ++S +SH
Sbjct: 12 AKARPSFPHNDLIKSMSDSLISRPTHPPIRKLKSSLKISH 51
>sp|Q9YGK4|COLI1_CYPCA Corticotropin-lipotropin I precursor (Pro-opiomelanocortin I) (POMC
I) [Contains: Corticotropin (Adrenocorticotropic
hormone) (ACTH); Melanotropin alpha (Alpha-MSH);
Corticotropin-like intermediary peptide (CLIP);
Lipotropin beta (Beta-LPH); Lipotropin gamma
(Gamma-LPH); Melanotropin beta (Beta-MSH);
Beta-endorphin; Met-enkephalin]
Length = 222
Score = 31.2 bits (69), Expect = 1.9
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Frame = +1
Query: 178 ISELRASEIVLEENLIARVERARSDAEYDECVRVLATFVPLIDRSPVADARPDL-PPGEL 354
+ + R ++ +EN++ ++ RSD L D +PV L PP EL
Sbjct: 31 MEDARCRDLTTDENILDCIQLCRSD---------------LTDETPVYPGESHLQPPSEL 75
Query: 355 LQVDHLLPRPPHQPVPAVQ 411
Q + L+P P PA Q
Sbjct: 76 EQTEVLVPLSPAALAPAEQ 94
>sp|P17544|ATF7_HUMAN Cyclic AMP-dependent transcription factor ATF-7 (Activating
transcription factor 7) (Transcription factor ATF-A)
Length = 494
Score = 30.4 bits (67), Expect = 3.3
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Frame = +1
Query: 259 YDECVRVLATFVPLIDRSPVADARPDLPPGELLQVDHL--------LPRPPHQPVPAVQS 414
YD L + +I ++P ++ + P G L V HL LP PP Q +
Sbjct: 173 YDPLHPTLPSPTSVITQAPPSNRQMGSPTGSLPLVMHLANGQTMPVLPGPPVQMPSVISL 232
Query: 415 CRAVSHLPHLP 447
R VS +P++P
Sbjct: 233 ARPVSMVPNIP 243
>sp|Q5R9C9|ATF7_PONPY Cyclic AMP-dependent transcription factor ATF-7 (Activating
transcription factor 7) (Transcription factor ATF-A)
Length = 483
Score = 30.4 bits (67), Expect = 3.3
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Frame = +1
Query: 259 YDECVRVLATFVPLIDRSPVADARPDLPPGELLQVDHL--------LPRPPHQPVPAVQS 414
YD L + +I ++P ++ + P G L V HL LP PP Q +
Sbjct: 162 YDPLHPTLPSPTSVITQAPPSNRQMGSPTGSLPLVMHLANGQTMPVLPGPPVQMPSVISL 221
Query: 415 CRAVSHLPHLP 447
R VS +P++P
Sbjct: 222 ARPVSMVPNIP 232
>sp|Q9EQZ7|RIMS2_MOUSE Regulating synaptic membrane exocytosis protein 2 (Rab3-interacting
molecule 2) (RIM 2) (Rab3 interacting protein 2)
Length = 1530
Score = 30.0 bits (66), Expect = 4.3
Identities = 24/93 (25%), Positives = 39/93 (41%)
Frame = +1
Query: 97 DTELEQPAEESDQDRLTRLKQNEKKR*ISELRASEIVLEENLIARVERARSDAEYDECVR 276
D L E + L R+ + ++R +SE RA+ + R A+ + Y + R
Sbjct: 410 DVSLANAELEDSRISLLRMDRPSRQRSVSERRAAMENQRSYSMERTREAQGQSSYPQ--R 467
Query: 277 VLATFVPLIDRSPVADARPDLPPGELLQVDHLL 375
P RSP+ RPD+ + L+ H L
Sbjct: 468 TSNHSPPTPRRSPIPLDRPDMRRADSLRKQHHL 500
>sp|Q9NZM4|GSCR1_HUMAN Glioma tumor suppressor candidate region gene 1 protein
Length = 1509
Score = 30.0 bits (66), Expect = 4.3
Identities = 16/38 (42%), Positives = 17/38 (44%)
Frame = +1
Query: 340 PPGELLQVDHLLPRPPHQPVPAVQSCRAVSHLPHLPPE 453
PP L+V PRPP P P Q V H P PE
Sbjct: 1284 PPPATLKVAEPPPRPPPPPPPTGQMNGTVDHPPPAAPE 1321
>sp|Q8R0S1|ATF7_MOUSE Cyclic AMP-dependent transcription factor ATF-7 (Activating
transcription factor 7) (Transcription factor ATF-A)
Length = 413
Score = 30.0 bits (66), Expect = 4.3
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Frame = +1
Query: 259 YDECVRVLATFVPLIDRSPVADARPDLPPGELLQVDHL--------LPRPPHQPVPAVQS 414
YD L + +I ++P ++ + P G L V HL LP PP Q +
Sbjct: 162 YDPLHPTLPSPTSVITQAPPSNRQIGSPTGSLPLVMHLANGQTMPMLPGPPVQMPSVISL 221
Query: 415 CRAVSHLPHLP 447
R VS +P++P
Sbjct: 222 ARPVSMVPNIP 232
>sp|O33558|CHEB3_RHOSH Chemotaxis response regulator protein-glutamate methylesterase of
group 3 operon
Length = 369
Score = 30.0 bits (66), Expect = 4.3
Identities = 25/73 (34%), Positives = 34/73 (46%)
Frame = +1
Query: 184 ELRASEIVLEENLIARVERARSDAEYDECVRVLATFVPLIDRSPVADARPDLPPGELLQV 363
EL A E++ + AR + R +A C + A RS + RP L PG L
Sbjct: 104 ELGAREVISKP--AARNDLERQEASIRICDAIRAATETTRRRSQ-PEPRP-LAPGPKLTA 159
Query: 364 DHLLPRPPHQPVP 402
D +LP P +PVP
Sbjct: 160 DEILPARPPRPVP 172
>sp|Q8PTT8|ECX1_METMA Probable exosome complex exonuclease 1
Length = 493
Score = 29.3 bits (64), Expect = 7.3
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Frame = +1
Query: 88 DDVDTELEQPAEESDQDRLTRLKQNEKKR*ISELRASEIV---LEENLIARVERARSDAE 258
D+++ E+E+ EES++D T ++ E++ E E + LEE+L +E + E
Sbjct: 301 DELEEEIEEELEESEEDLETEEEEFEEEALEEEAEPEEDLEEDLEEDLGEELEEEEEELE 360
Query: 259 YDE 267
+E
Sbjct: 361 EEE 363
>sp|Q9NIW4|TRA2_CAERE Sex-determining transformer protein 2 precursor (Cr-tra-2)
Length = 1485
Score = 29.3 bits (64), Expect = 7.3
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +1
Query: 298 LIDRSPVADARP-DLPPGELLQVDHLLPRPPHQPVPAVQSCRAVSHLPHLPP 450
L+ R+P RP ++PP +D +PR P P +Q C + P LPP
Sbjct: 1339 LVQRAP----RPHEMPP----VIDRTIPRDPRTEPPNLQECIQQNDDPSLPP 1382
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,877,210
Number of Sequences: 369166
Number of extensions: 947661
Number of successful extensions: 4179
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4150
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4226258440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)