Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_G11
(673 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q662V4|Y059_BORGA Hypothetical UPF0054 protein BG0059 34 0.40
sp|P18015|COP_CLOPE Copy number protein (ORF4) 32 1.5
sp|P24499|ATP6_TRYBB ATP synthase a chain (ATPase protein 6) 32 2.0
sp|P60290|RPOC2_PHYPA DNA-directed RNA polymerase beta'' ch... 31 3.3
sp|Q48456|YC10_KLEPN Hypothetical 49.5 kDa protein in cps r... 30 5.7
sp|P48236|YG3L_YEAST Hypothetical 51.6 kDa protein in RPL24... 30 7.5
sp|Q5DUY0|NU5H_NYCOV NADH-ubiquinone oxidoreductase chain 5... 30 7.5
>sp|Q662V4|Y059_BORGA Hypothetical UPF0054 protein BG0059
Length = 152
Score = 33.9 bits (76), Expect = 0.40
Identities = 17/64 (26%), Positives = 36/64 (56%)
Frame = -2
Query: 666 IGRIKFEFTKLFNIFNIYINGTVKMRNILVALIE*SNIFGTPLNNKYRHNNKLINIY*QS 487
+ IKFE +F+ F + + T+ + + +++I N++ LNNK+R+ N+ ++ +
Sbjct: 10 VENIKFEHLSVFHDFILSVLNTLSISDFELSVILCDNVYIQKLNNKFRNKNEPTDVLSFN 69
Query: 486 INNL 475
N L
Sbjct: 70 YNEL 73
>sp|P18015|COP_CLOPE Copy number protein (ORF4)
Length = 198
Score = 32.0 bits (71), Expect = 1.5
Identities = 31/123 (25%), Positives = 58/123 (47%), Gaps = 14/123 (11%)
Frame = +3
Query: 264 KILYTNIMLIMLMCVCVNICVRAVVLYSYSPFVSPHIIIPTLSLILNYSGYVHS------ 425
K L +I+ I+ + +C+N+ +V +SY+ V + I + L+LN S + S
Sbjct: 8 KDLIFSILTILFVILCLNL----IVFFSYNKAVEVNQSIFLMMLLLNLSFIIISLLYLLF 63
Query: 426 -----RNNILINHF---LFFYSIFIDY*LIVNKYLLICYYVDIYCLMVFRIYLIIQSMLL 581
+ L+N F LF +S D + +N + I + + +F I++II + L
Sbjct: 64 LKKLVKFPALLNLFLGILFSFSSLQDLIISLNMFYQILSFSKF--IYIFIIFIIIYILFL 121
Query: 582 KYF 590
+F
Sbjct: 122 SFF 124
>sp|P24499|ATP6_TRYBB ATP synthase a chain (ATPase protein 6)
Length = 229
Score = 31.6 bits (70), Expect = 2.0
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
Frame = +3
Query: 432 NILINHFL------FFYSIFIDY*LIVNKYLLICYYVDIYCLM--VFRIYLIIQSMLLKY 587
N+L +HFL FFY IF+ + V Y ++ +V +CL+ VF L + + +L+
Sbjct: 149 NLLSSHFLLLMFFDFFYFIFVFFFYGVFCYFILFIFVFCFCLLFYVFLYLLDLFAAILQL 208
Query: 588 FAF 596
F F
Sbjct: 209 FIF 211
Score = 29.3 bits (64), Expect = 9.7
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +3
Query: 486 LIVNKYLLICYYVDIYCLMVFRIYLIIQSMLLKYFAFLLFHLCKC 620
++ N Y LI YY C+ +YL+ + L Y AFL C
Sbjct: 63 MLFNLYSLILYY----CITYLNLYLLFCIVFLLYIAFLFLFCFLC 103
>sp|P60290|RPOC2_PHYPA DNA-directed RNA polymerase beta'' chain (PEP) (Plastid-encoded RNA
polymerase beta'' subunit) (RNA polymerase beta''
subunit)
Length = 1330
Score = 30.8 bits (68), Expect = 3.3
Identities = 13/18 (72%), Positives = 14/18 (77%)
Frame = -2
Query: 558 NIFGTPLNNKYRHNNKLI 505
NIF TPL N Y+ NNKLI
Sbjct: 219 NIFVTPLQNNYKKNNKLI 236
>sp|Q48456|YC10_KLEPN Hypothetical 49.5 kDa protein in cps region (ORF10)
Length = 429
Score = 30.0 bits (66), Expect = 5.7
Identities = 28/126 (22%), Positives = 57/126 (45%), Gaps = 16/126 (12%)
Frame = +3
Query: 282 IMLIMLMCVCVNICVRAVV----LYSYSPFVSPHIIIPTLSLILNYSGYVHSRNNILINH 449
I+++++ V +N A++ + Y+ F+SP + SL + GY + +L+
Sbjct: 144 IIIVVIFSVLLNYLDPAIINNKSIIQYNDFISPERL-RGFSLEASVFGYQIVCSILLLAV 202
Query: 450 FLFFYSIFIDY*LIVNKYLL------------ICYYVDIYCLMVFRIYLIIQSMLLKYFA 593
L + + F+ IV L IC+Y + ++FR+ L + S+++ Y
Sbjct: 203 LLNWSTFFLVTVTIVIAILTTSKGAALSFLICICFYFSLKGKLMFRVLLSLCSIVISYII 262
Query: 594 FLLFHL 611
F + L
Sbjct: 263 FKYYFL 268
>sp|P48236|YG3L_YEAST Hypothetical 51.6 kDa protein in RPL24B-RSR1 intergenic region
Length = 432
Score = 29.6 bits (65), Expect = 7.5
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +3
Query: 471 FIDY*LIVNKYLL--ICYYVDIYCLMVFRIYLIIQSMLLKYFAFLLFHLC 614
F Y N Y L CY+V++ CL+ I+ S+ FAF LC
Sbjct: 153 FYTYYKTKNHYFLADFCYFVNMLCLLFIWIFPYSYSLFQSCFAFTFGTLC 202
>sp|Q5DUY0|NU5H_NYCOV NADH-ubiquinone oxidoreductase chain 5 (NADH dehydrogenase subunit
5)
Length = 1849
Score = 29.6 bits (65), Expect = 7.5
Identities = 34/161 (21%), Positives = 72/161 (44%), Gaps = 13/161 (8%)
Frame = +3
Query: 123 NILMIRQHFTRSNPVIILMSMMMPHLVFLSLQL****YISVMIYTI*KILYTN------- 281
++L+ H+ ++ L ++ P + SL I ++ Y + ++LY+
Sbjct: 301 SLLLDIYHYQIGLTILALQYLVAPLYISCSL------LIYILCYIMTELLYSRSFYIDLL 354
Query: 282 --IMLIMLMCVCVNICVRAVVLY---SYSPFVSPHIIIPTLSLILNY-SGYVHSRNNILI 443
++ I+ + + VN + ++L + + +II LS +N SGYV ILI
Sbjct: 355 LRLLEIIYLDILVNSLISIIILILSVDVAYLIQLQVII--LSQYINIISGYVAMPTTILI 412
Query: 444 NHFLFFYSIFIDY*LIVNKYLLICYYVDIYCLMVFRIYLII 566
+L+ +++I Y L+ Y I L+++ + I+
Sbjct: 413 TWYLYNIAVYI--------YYLVDYIATISTLIIWLLERIL 445
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,177,606
Number of Sequences: 369166
Number of extensions: 996989
Number of successful extensions: 2592
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2586
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5636246860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)