Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_G03
(941 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P48594|SCCA2_HUMAN Squamous cell carcinoma antigen 2 (SC... 175 1e-43
sp|P29508|SCCA1_HUMAN Squamous cell carcinoma antigen 1 (SC... 170 6e-42
sp|Q9UIV8|SPB13_HUMAN Serpin B13 (Hurpin) (HaCaT UV-repress... 160 4e-39
sp|O02739|SPB6_BOVIN Serine proteinase inhibitor B-43 (Serp... 160 6e-39
sp|Q8CDC0|SPB13_MOUSE Serpin B13 158 2e-38
sp|P35237|SPB6_HUMAN Placental thrombin inhibitor (Cytoplas... 156 9e-38
sp|P01014|OVALY_CHICK Gene Y protein (Ovalbumin-related) 154 3e-37
sp|P50453|SPB9_HUMAN Cytoplasmic antiproteinase 3 (CAP3) (C... 153 8e-37
sp|P80229|ILEU_PIG Leukocyte elastase inhibitor (LEI) (Serp... 153 8e-37
sp|P48595|SPB10_HUMAN Serpin B10 (Bomapin) (Protease inhibi... 152 1e-36
>sp|P48594|SCCA2_HUMAN Squamous cell carcinoma antigen 2 (SCCA-2) (Leupin)
Length = 390
Score = 175 bits (444), Expect = 1e-43
Identities = 114/311 (36%), Positives = 169/311 (54%), Gaps = 18/311 (5%)
Frame = +1
Query: 61 KFGLDLFRTICKDDFDKNIIYSPLSIYMALGMTLYGAKGDTATQMMTTLHWDQSNSDS-- 234
KF DLF+ K + NI YSP+SI ALGM L GAK +TA Q+ LH+DQ ++
Sbjct: 10 KFMFDLFQQFRKSK-ENNIFYSPISITSALGMVLLGAKDNTAQQISKVLHFDQVTENTTE 68
Query: 235 ----YHLQLS-----DCMKTINVDDENKGA--IKIANKLFLENHYQLLDSYVKAIDNFYN 381
YH+ S K + +++ A +KIANKLF E YQ L Y+ AI FY
Sbjct: 69 KAATYHVDRSGNVHHQFQKLLTEFNKSTDAYELKIANKLFGEKTYQFLQEYLDAIKKFYQ 128
Query: 382 GGIEKMNFVSNSDKSCKDINSWVEHQTNGKIKDLLQSKDINSLTRLILVNAIYFKNSWQN 561
+E +F + ++S K INSWVE QTN KIK+L I + T L+LVNAIYFK W+N
Sbjct: 129 TSVESTDFANAPEESRKKINSWVESQTNEKIKNLFPDGTIGNDTTLVLVNAIYFKGQWEN 188
Query: 562 EFKA--CGDQNFHLLNGKSKPTAMISKIHFYNYLKNSKLNFSAVQIPFSRIQNNDYSFMV 735
+FK ++ F K M+ + + +N+ + ++IP+ + D S +V
Sbjct: 189 KFKKENTKEEKFWPNKNTYKSVQMMRQYNSFNFALLEDVQAKVLEIPY---KGKDLSMIV 245
Query: 736 ILPNDRCKLPELEKSIFQH---EWKSLFGDDLFEHSSVHVTIPKFRIETSFSLKNELQNL 906
+LPN+ L +LE+ + EW SL + V + +P+F++E S+ LK+ L+ +
Sbjct: 246 LLPNEIDGLQKLEEKLTAEKLMEWTSL---QNMRETCVDLHLPRFKMEESYDLKDTLRTM 302
Query: 907 GMVKPFSLNAD 939
GMV F+ +AD
Sbjct: 303 GMVNIFNGDAD 313
>sp|P29508|SCCA1_HUMAN Squamous cell carcinoma antigen 1 (SCCA-1) (Protein T4-A)
Length = 390
Score = 170 bits (430), Expect = 6e-42
Identities = 111/311 (35%), Positives = 169/311 (54%), Gaps = 18/311 (5%)
Frame = +1
Query: 61 KFGLDLFRTICKDDFDKNIIYSPLSIYMALGMTLYGAKGDTATQMMTTLHWDQSNSDS-- 234
KF DLF+ K + NI YSP+SI ALGM L GAK +TA Q+ LH+DQ ++
Sbjct: 10 KFMFDLFQQFRKSK-ENNIFYSPISITSALGMVLLGAKDNTAQQIKKVLHFDQVTENTTG 68
Query: 235 ----YHLQLS-----DCMKTINVDDENKGA--IKIANKLFLENHYQLLDSYVKAIDNFYN 381
YH+ S K + +++ A +KIANKLF E Y L Y+ AI FY
Sbjct: 69 KAATYHVDRSGNVHHQFQKLLTEFNKSTDAYELKIANKLFGEKTYLFLQEYLDAIKKFYQ 128
Query: 382 GGIEKMNFVSNSDKSCKDINSWVEHQTNGKIKDLLQSKDINSLTRLILVNAIYFKNSWQN 561
+E ++F + ++S K INSWVE QTN KIK+L+ +I S T L+LVNAIYFK W+
Sbjct: 129 TSVESVDFANAPEESRKKINSWVESQTNEKIKNLIPEGNIGSNTTLVLVNAIYFKGQWEK 188
Query: 562 EF--KACGDQNFHLLNGKSKPTAMISKIHFYNYLKNSKLNFSAVQIPFSRIQNNDYSFMV 735
+F + ++ F K M+ + +++ + ++IP+ + D S +V
Sbjct: 189 KFNKEDTKEEKFWPNKNTYKSIQMMRQYTSFHFASLEDVQAKVLEIPY---KGKDLSMIV 245
Query: 736 ILPNDRCKLPELEKSIFQH---EWKSLFGDDLFEHSSVHVTIPKFRIETSFSLKNELQNL 906
+LPN+ L +LE+ + EW SL + V + +P+F++E S+ LK+ L+ +
Sbjct: 246 LLPNEIDGLQKLEEKLTAEKLMEWTSL---QNMRETRVDLHLPRFKVEESYDLKDTLRTM 302
Query: 907 GMVKPFSLNAD 939
GMV F+ +AD
Sbjct: 303 GMVDIFNGDAD 313
>sp|Q9UIV8|SPB13_HUMAN Serpin B13 (Hurpin) (HaCaT UV-repressible serpin) (Protease
inhibitor 13) (Headpin)
Length = 391
Score = 160 bits (406), Expect = 4e-39
Identities = 98/306 (32%), Positives = 157/306 (51%), Gaps = 17/306 (5%)
Frame = +1
Query: 61 KFGLDLFRTICKDDFDKNIIYSPLSIYMALGMTLYGAKGDTATQMMTTLHWDQS------ 222
+ G DLF+ + K + D NI +SP+ I A+GM L G +G TA+Q+ H ++
Sbjct: 10 RLGFDLFKELKKTN-DGNIFFSPVGILTAIGMVLLGTRGATASQLEEVFHSEKETKSSRI 68
Query: 223 ---------NSDSYHLQLSDCMKTINVDDENKGAIKIANKLFLENHYQLLDSYVKAIDNF 375
N+++ H Q + I+ N + I N+LF E Y L Y+ ++ +
Sbjct: 69 KAEEKEVIENTEAVHQQFQKFLTEIS-KLTNDYELNITNRLFGEKTYLFLQKYLDYVEKY 127
Query: 376 YNGGIEKMNFVSNSDKSCKDINSWVEHQTNGKIKDLLQSKDINSLTRLILVNAIYFKNSW 555
Y+ +E ++FV+ +D+S K INSWVE +TN KIKDL I+S T+L+LVN +YFK W
Sbjct: 128 YHASLEPVDFVNAADESRKKINSWVESKTNEKIKDLFPDGSISSSTKLVLVNMVYFKGQW 187
Query: 556 QNEFKA--CGDQNFHLLNGKSKPTAMISKIHFYNYLKNSKLNFSAVQIPFSRIQNNDYSF 729
EFK ++ F + SK M+++ H +++ L + IP+ +NND S
Sbjct: 188 DREFKKENTKEEKFWMNKSTSKSVQMMTQSHSFSFTFLEDLQAKILGIPY---KNNDLSM 244
Query: 730 MVILPNDRCKLPELEKSIFQHEWKSLFGDDLFEHSSVHVTIPKFRIETSFSLKNELQNLG 909
V+LPND L ++ I + E V++ +P+F +E + L+ L +G
Sbjct: 245 FVLLPNDIDGLEKIIDKISPEKLVEWTSPGHMEERKVNLHLPRFEVEDGYDLEAVLAAMG 304
Query: 910 MVKPFS 927
M FS
Sbjct: 305 MGDAFS 310
>sp|O02739|SPB6_BOVIN Serine proteinase inhibitor B-43 (Serpin B6)
Length = 378
Score = 160 bits (404), Expect = 6e-39
Identities = 93/291 (31%), Positives = 160/291 (54%), Gaps = 4/291 (1%)
Frame = +1
Query: 64 FGLDLFRTICKDDFDKNIIYSPLSIYMALGMTLYGAKGDTATQMMTTLHWDQSNS--DSY 237
F L L + + + + KN+ SPLSI AL M L GAKG+TA QM TL ++S+ +
Sbjct: 11 FALTLLKKLGEGN-SKNVFISPLSISSALAMVLLGAKGNTAAQMCQTLSLNKSSGGGEDV 69
Query: 238 HLQLSDCMKTINVDDENKGAIKIANKLFLENHYQLLDSYVKAIDNFYNGGIEKMNFVSNS 417
H + + +N D + ++ AN+LF E Y L S+ + FY +E+++FVS +
Sbjct: 70 HQGFQNLLSEVNRRD-TQYLLRTANRLFGEKTYDFLSSFKDSCHKFYQAEMEELDFVSAT 128
Query: 418 DKSCKDINSWVEHQTNGKIKDLLQSKDINSLTRLILVNAIYFKNSWQNEF--KACGDQNF 591
++S K IN+WV +T GKI+DLL + +N +TRL+LVNAIYFK +W +F + ++ F
Sbjct: 129 EQSRKHINTWVAEKTEGKIRDLLPANSVNPMTRLVLVNAIYFKGNWDTQFNKEHTEERPF 188
Query: 592 HLLNGKSKPTAMISKIHFYNYLKNSKLNFSAVQIPFSRIQNNDYSFMVILPNDRCKLPEL 771
+ KP M+ K +++ + +P+ + + +++LP++ L +
Sbjct: 189 RVSKNVEKPVQMMFKKSTCKITYIGEISTQILVLPY---VGQELNMVILLPSESTDLNTV 245
Query: 772 EKSIFQHEWKSLFGDDLFEHSSVHVTIPKFRIETSFSLKNELQNLGMVKPF 924
EK++ ++ + D+ + V V +P+F +E S+ ++ LQ LGM F
Sbjct: 246 EKALTYEKFIAWTKPDVMDEEEVEVFLPRFTLEESYDMEEFLQELGMTDAF 296
>sp|Q8CDC0|SPB13_MOUSE Serpin B13
Length = 389
Score = 158 bits (400), Expect = 2e-38
Identities = 97/309 (31%), Positives = 160/309 (51%), Gaps = 16/309 (5%)
Frame = +1
Query: 61 KFGLDLFRTICKDDFDKNIIYSPLSIYMALGMTLYGAKGDTATQMMTTLHWDQSNSDS-- 234
+F DLF+ + K + D N+ +SP+ I A+GM + G +G TA+++ L+ +Q S
Sbjct: 10 QFLFDLFKELNKTN-DGNVFFSPVGISTAIGMIILGTRGATASELQKVLYTEQGTESSRI 68
Query: 235 ------------YHLQLSDCMKTINVDDENKGAIKIANKLFLENHYQLLDSYVKAIDNFY 378
H QL + I+ + I I+N+LF E Y L Y+ ++ +Y
Sbjct: 69 KSEEEEIEKREEIHHQLQMLLTEISKFSNDYDLI-ISNRLFGEKTYLFLQKYIDYVEKYY 127
Query: 379 NGGIEKMNFVSNSDKSCKDINSWVEHQTNGKIKDLLQSKDINSLTRLILVNAIYFKNSWQ 558
+ +E ++FV+ +D+S K INSWVE QTN K+KDL +NS T+L+L+N +YFK W
Sbjct: 128 HASLEPVDFVNAADESRKKINSWVESQTNVKVKDLFPEGSLNSSTKLVLINTVYFKGLWD 187
Query: 559 NEFKA--CGDQNFHLLNGKSKPTAMISKIHFYNYLKNSKLNFSAVQIPFSRIQNNDYSFM 732
EFK +++F L SKP M++ +N+ L V IP+ +NND S
Sbjct: 188 REFKKEHTKEEDFWLNKNLSKPVQMMALCSSFNFTFLEDLQAKIVGIPY---KNNDISMF 244
Query: 733 VILPNDRCKLPELEKSIFQHEWKSLFGDDLFEHSSVHVTIPKFRIETSFSLKNELQNLGM 912
V+LPND L ++ + + E V + +P+ ++E ++ + L+ +G+
Sbjct: 245 VLLPNDIDGLEKIMDKMSPEKLVEWTSPGHLEQRRVDLRLPRLQVEETYDQEPVLEAVGI 304
Query: 913 VKPFSLNAD 939
FS +AD
Sbjct: 305 HSAFSEHAD 313
>sp|P35237|SPB6_HUMAN Placental thrombin inhibitor (Cytoplasmic antiproteinase) (CAP)
(Protease inhibitor 6) (PI-6) (Serpin B6)
Length = 376
Score = 156 bits (394), Expect = 9e-38
Identities = 90/292 (30%), Positives = 159/292 (54%), Gaps = 3/292 (1%)
Frame = +1
Query: 64 FGLDLFRTICKDDFDKNIIYSPLSIYMALGMTLYGAKGDTATQMMTTLHWDQSNSDS-YH 240
F L+L +T+ KD+ KN+ +SP+S+ AL M GAKG+TA QM L +++S H
Sbjct: 11 FALNLLKTLGKDN-SKNVFFSPMSMSCALAMVYMGAKGNTAAQMAQILSFNKSGGGGDIH 69
Query: 241 LQLSDCMKTINVDDENKGAIKIANKLFLENHYQLLDSYVKAIDNFYNGGIEKMNFVSNSD 420
+ +N + +++AN+LF E L S+ + FY +E+++F+S +
Sbjct: 70 QGFQSLLTEVNKTG-TQYLLRVANRLFGEKSCDFLSSFRDSCQKFYQAEMEELDFISAVE 128
Query: 421 KSCKDINSWVEHQTNGKIKDLLQSKDINSLTRLILVNAIYFKNSWQNEF--KACGDQNFH 594
KS K IN+WV +T GKI +LL ++ LTRL+LVNA+YF+ +W +F + ++ F
Sbjct: 129 KSRKHINTWVAEKTEGKIAELLSPGSVDPLTRLVLVNAVYFRGNWDEQFDKENTEERLFK 188
Query: 595 LLNGKSKPTAMISKIHFYNYLKNSKLNFSAVQIPFSRIQNNDYSFMVILPNDRCKLPELE 774
+ + KP M+ K + K + + QI + + +++LP++ L +E
Sbjct: 189 VSKNEEKPVQMMFK---QSTFKKTYIGEIFTQILVLPYVGKELNMIIMLPDETTDLRTVE 245
Query: 775 KSIFQHEWKSLFGDDLFEHSSVHVTIPKFRIETSFSLKNELQNLGMVKPFSL 930
K + ++ D+ + V V++P+F++E S+ +++ L+NLGM F L
Sbjct: 246 KELTYEKFVEWTRLDMMDEEEVEVSLPRFKLEESYDMESVLRNLGMTDAFEL 297
>sp|P01014|OVALY_CHICK Gene Y protein (Ovalbumin-related)
Length = 388
Score = 154 bits (389), Expect = 3e-37
Identities = 92/307 (29%), Positives = 162/307 (52%), Gaps = 14/307 (4%)
Frame = +1
Query: 61 KFGLDLFRTICKDDFDKNIIYSPLSIYMALGMTLYGAKGDTATQMMTTLHWDQ------- 219
KF D+F + ++NI+Y PLSI AL M GA+G+T +QM LH+D
Sbjct: 10 KFCFDVFNEMKVHHVNENILYCPLSILTALAMVYLGARGNTESQMKKVLHFDSITGAGST 69
Query: 220 -----SNSDSYHLQLSDCMKTINVDDENKGAIKIANKLFLENHYQLLDSYVKAIDNFYNG 384
+S+ H + + I + +++IA+KL+++ + +L Y+ FY G
Sbjct: 70 TDSQCGSSEYVHNLFKELLSEITRPNATY-SLEIADKLYVDKTFSVLPEYLSCARKFYTG 128
Query: 385 GIEKMNFVSNSDKSCKDINSWVEHQTNGKIKDLLQSKDINSLTRLILVNAIYFKNSWQNE 564
G+E++NF + ++++ + INSWVE +TNG+IKDLL S I+ T ++ +N IYFK W+
Sbjct: 129 GVEEVNFKTAAEEARQLINSWVEKETNGQIKDLLVSSSIDFGTTMVFINTIYFKGIWKIA 188
Query: 565 FKA--CGDQNFHLLNGKSKPTAMISKIHFYNYLKNSKLNFSAVQIPFSRIQNNDYSFMVI 738
F + F + +SKP M+ + +N +++P++ + D S +V+
Sbjct: 189 FNTEDTREMPFSMTKEESKPVQMMCMNNSFNVATLPAEKMKILELPYA---SGDLSMLVL 245
Query: 739 LPNDRCKLPELEKSIFQHEWKSLFGDDLFEHSSVHVTIPKFRIETSFSLKNELQNLGMVK 918
LP++ L +EK+I + + + S+ V +P+ +IE ++L + L LGM
Sbjct: 246 LPDEVSGLERIEKTINFDKLREWTSTNAMAKKSMKVYLPRMKIEEKYNLTSILMALGMTD 305
Query: 919 PFSLNAD 939
FS +A+
Sbjct: 306 LFSRSAN 312
>sp|P50453|SPB9_HUMAN Cytoplasmic antiproteinase 3 (CAP3) (CAP-3) (Protease inhibitor 9)
(Serpin B9)
Length = 376
Score = 153 bits (386), Expect = 8e-37
Identities = 86/289 (29%), Positives = 159/289 (55%), Gaps = 2/289 (0%)
Frame = +1
Query: 64 FGLDLFRTICKDDFDKNIIYSPLSIYMALGMTLYGAKGDTATQMMTTLHWDQSNSDSYHL 243
F + L + +C+D+ N+ SP+SI AL M L GAKG+TATQM L + + H
Sbjct: 11 FAIRLLKILCQDNPSHNVFCSPVSISSALAMVLLGAKGNTATQMAQAL--SLNTEEDIHR 68
Query: 244 QLSDCMKTINVDDENKGAIKIANKLFLENHYQLLDSYVKAIDNFYNGGIEKMNFVSNSDK 423
+ +N + ++ AN+LF E Q L ++ ++ FY+ +++++F+ +++
Sbjct: 69 AFQSLLTEVNKAG-TQYLLRTANRLFGEKTCQFLSTFKESCLQFYHAELKELSFIRAAEE 127
Query: 424 SCKDINSWVEHQTNGKIKDLLQSKDINSLTRLILVNAIYFKNSWQNEFKA--CGDQNFHL 597
S K IN+WV +T GKI++LL I++ TRL+LVNAIYFK W F + F +
Sbjct: 128 SRKHINTWVSKKTEGKIEELLPGSSIDAETRLVLVNAIYFKGKWNEPFDETYTREMPFKI 187
Query: 598 LNGKSKPTAMISKIHFYNYLKNSKLNFSAVQIPFSRIQNNDYSFMVILPNDRCKLPELEK 777
+ +P M+ + + ++ +++P++R + S +V+LP+D +L +EK
Sbjct: 188 NQEEQRPVQMMYQEATFKLAHVGEVRAQLLELPYAR---KELSLLVLLPDDGVELSTVEK 244
Query: 778 SIFQHEWKSLFGDDLFEHSSVHVTIPKFRIETSFSLKNELQNLGMVKPF 924
S+ + + D + + V V +PKF+++ + +++ L++LG+V F
Sbjct: 245 SLTFEKLTAWTKPDCMKSTEVEVLLPKFKLQEDYDMESVLRHLGIVDAF 293
>sp|P80229|ILEU_PIG Leukocyte elastase inhibitor (LEI) (Serpin B1) (Leucocyte neutral
proteinase inhibitor) (LNPI)
Length = 378
Score = 153 bits (386), Expect = 8e-37
Identities = 103/304 (33%), Positives = 157/304 (51%), Gaps = 11/304 (3%)
Frame = +1
Query: 61 KFGLDLFRTICKDDFDKNIIYSPLSIYMALGMTLYGAKGDTATQMMTTLHWDQSNSDSYH 240
+F LDLFR + + + NI SP SI AL M L G +G+T QM LH+D
Sbjct: 10 RFALDLFRALNESNPAGNIFISPFSISSALAMILLGTRGNTEAQMSKALHFDTVKDIHSR 69
Query: 241 LQLSDCMKTINVDDENKGA---IKIANKLFLENHYQLLDSYVKAIDNFYNGGIEKMNFVS 411
Q ++N D GA +K+AN+LF E Y L ++ + Y + ++F+
Sbjct: 70 FQ------SLNADINKCGASYILKLANRLFGEKTYHFLPEFLASTQKTYGAELASVDFLR 123
Query: 412 NSDKSCKDINSWVEHQTNGKIKDLLQSKDINSLTRLILVNAIYFKNSWQNEF--KACGDQ 585
S+++ K IN WV+ QT GKI +LL S ++S T+L+LVNAIYFK SWQ +F +A D
Sbjct: 124 ASEEARKAINEWVKEQTEGKIPELLASGVVDSATKLVLVNAIYFKGSWQEKFMTEATKDA 183
Query: 586 NFHLLNGKSKPTAMI--SKIHFYNYLKNSKLNFSAVQIPFSRIQNNDYSFMVILP----N 747
F L SK M+ K + Y+K +L +++P+ Q D S +++LP +
Sbjct: 184 PFRLNKKDSKTVKMMYQKKKFPFGYIK--ELKCRVLELPY---QGKDLSMVILLPDSIED 238
Query: 748 DRCKLPELEKSIFQHEWKSLFGDDLFEHSSVHVTIPKFRIETSFSLKNELQNLGMVKPFS 927
+ L ++E+ + + D E V+V +P+FR+E S+ L L LG+ F
Sbjct: 239 ESTGLRKIEQHLTLEKLNEWTKPDNLELLEVNVHLPRFRLEESYDLNAPLARLGVQDLFG 298
Query: 928 LNAD 939
AD
Sbjct: 299 SRAD 302
>sp|P48595|SPB10_HUMAN Serpin B10 (Bomapin) (Protease inhibitor 10)
Length = 397
Score = 152 bits (384), Expect = 1e-36
Identities = 97/317 (30%), Positives = 160/317 (50%), Gaps = 25/317 (7%)
Frame = +1
Query: 52 SCQKFGLDLFRTICKDDFDKNIIYSPLSIYMALGMTLYGAKGDTATQMMTTLHWDQ---- 219
S +F L+L + + + KNI +S SI +L + GAKG TA QM L +++
Sbjct: 7 SINQFALELSKKLAESAQGKNIFFSSWSISTSLTIVYLGAKGTTAAQMAQVLQFNRDQGV 66
Query: 220 ----------------SNSDSYHLQLSDCMKTINVDDENKGAIKIANKLFLENHYQLLDS 351
SNS+ H + I +++ +K AN ++ E Y +
Sbjct: 67 KCDPESEKKRKMEFNLSNSEEIHSDFQTLISEILKPNDDY-LLKTANAIYGEKTYAFHNK 125
Query: 352 YVKAIDNFYNGGIEKMNFVSNSDKSCKDINSWVEHQTNGKIKDLLQSKDINSLTRLILVN 531
Y++ + ++ + +NFV SD+ KDINSWVE QT GKI++LL ++S TR+ILVN
Sbjct: 126 YLEDMKTYFGAEPQPVNFVEASDQIRKDINSWVERQTEGKIQNLLPDDSVDSTTRMILVN 185
Query: 532 AIYFKNSWQNEF--KACGDQNFHLLNGKSKPTAMI---SKIHFYNYLKNSKLNFSAVQIP 696
A+YFK W+++F + ++ F + SKP M+ K+H ++ K +
Sbjct: 186 ALYFKGIWEHQFLVQNTTEKPFRINETTSKPVQMMFMKKKLHIFHIEKPKAVGLQLY--- 242
Query: 697 FSRIQNNDYSFMVILPNDRCKLPELEKSIFQHEWKSLFGDDLFEHSSVHVTIPKFRIETS 876
++ D S +++LP D L +LEK+I + D+ E V + +PKF++E S
Sbjct: 243 ---YKSRDLSLLILLPEDINGLEQLEKAITYEKLNEWTSADMMELYEVQLHLPKFKLEDS 299
Query: 877 FSLKNELQNLGMVKPFS 927
+ LK+ L ++GM FS
Sbjct: 300 YDLKSTLSSMGMSDAFS 316
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,676,494
Number of Sequences: 369166
Number of extensions: 1976765
Number of successful extensions: 5490
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5173
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9750928390
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)