Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_F23
(125 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P13444|METL_RAT S-adenosylmethionine synthetase alpha an... 54 1e-07
sp|Q00266|METL_HUMAN S-adenosylmethionine synthetase alpha ... 54 1e-07
sp|P18298|METK_RAT S-adenosylmethionine synthetase gamma fo... 52 4e-07
sp|P31153|METK_HUMAN S-adenosylmethionine synthetase gamma ... 52 4e-07
sp|P40320|METK_DROME S-adenosylmethionine synthetase (Methi... 52 4e-07
sp|P50306|METL_CAEEL Probable S-adenosylmethionine syntheta... 50 2e-06
sp|Q27522|METN_CAEEL Probable S-adenosylmethionine syntheta... 50 2e-06
sp|O60198|METK_SCHPO S-adenosylmethionine synthetase (Methi... 49 3e-06
sp|P50305|METK_CAEEL Probable S-adenosylmethionine syntheta... 49 5e-06
sp|P19358|METL_YEAST S-adenosylmethionine synthetase 2 (Met... 48 8e-06
>sp|P13444|METL_RAT S-adenosylmethionine synthetase alpha and beta forms (Methionine
adenosyltransferase) (AdoMet synthetase) (MAT-I/III)
Length = 397
Score = 53.5 bits (127), Expect = 1e-07
Identities = 27/41 (65%), Positives = 27/41 (65%)
Frame = +3
Query: 3 DTYXXXXXXXXXXXXXKDYTKVDRSGAYAARWVAKSLVKAG 125
DTY KDYTKVDRS AYAARWVAKSLVKAG
Sbjct: 270 DTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKAG 310
>sp|Q00266|METL_HUMAN S-adenosylmethionine synthetase alpha and beta forms (Methionine
adenosyltransferase) (AdoMet synthetase) (MAT-I/III)
Length = 395
Score = 53.5 bits (127), Expect = 1e-07
Identities = 27/41 (65%), Positives = 27/41 (65%)
Frame = +3
Query: 3 DTYXXXXXXXXXXXXXKDYTKVDRSGAYAARWVAKSLVKAG 125
DTY KDYTKVDRS AYAARWVAKSLVKAG
Sbjct: 269 DTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKAG 309
>sp|P18298|METK_RAT S-adenosylmethionine synthetase gamma form (Methionine
adenosyltransferase) (AdoMet synthetase) (MAT-II)
Length = 395
Score = 52.0 bits (123), Expect = 4e-07
Identities = 26/41 (63%), Positives = 26/41 (63%)
Frame = +3
Query: 3 DTYXXXXXXXXXXXXXKDYTKVDRSGAYAARWVAKSLVKAG 125
DTY KDYTKVDRS AYAARWVAKSLVK G
Sbjct: 269 DTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKGG 309
>sp|P31153|METK_HUMAN S-adenosylmethionine synthetase gamma form (Methionine
adenosyltransferase) (AdoMet synthetase) (MAT-II)
Length = 395
Score = 52.0 bits (123), Expect = 4e-07
Identities = 26/41 (63%), Positives = 26/41 (63%)
Frame = +3
Query: 3 DTYXXXXXXXXXXXXXKDYTKVDRSGAYAARWVAKSLVKAG 125
DTY KDYTKVDRS AYAARWVAKSLVK G
Sbjct: 269 DTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKGG 309
>sp|P40320|METK_DROME S-adenosylmethionine synthetase (Methionine adenosyltransferase)
(AdoMet synthetase)
Length = 408
Score = 52.0 bits (123), Expect = 4e-07
Identities = 26/41 (63%), Positives = 27/41 (65%)
Frame = +3
Query: 3 DTYXXXXXXXXXXXXXKDYTKVDRSGAYAARWVAKSLVKAG 125
DTY KD+TKVDRS AYAARWVAKSLVKAG
Sbjct: 280 DTYGGWGAHGGGAFSGKDFTKVDRSAAYAARWVAKSLVKAG 320
>sp|P50306|METL_CAEEL Probable S-adenosylmethionine synthetase C06E7.3 (Methionine
adenosyltransferase) (AdoMet synthetase)
Length = 404
Score = 49.7 bits (117), Expect = 2e-06
Identities = 26/41 (63%), Positives = 26/41 (63%)
Frame = +3
Query: 3 DTYXXXXXXXXXXXXXKDYTKVDRSGAYAARWVAKSLVKAG 125
DTY KD TKVDRS AYAARWVAKSLVKAG
Sbjct: 257 DTYGGWGAHGGGAFSGKDPTKVDRSAAYAARWVAKSLVKAG 297
>sp|Q27522|METN_CAEEL Probable S-adenosylmethionine synthetase T13A10.11 (Methionine
adenosyltransferase) (AdoMet synthetase)
Length = 404
Score = 49.7 bits (117), Expect = 2e-06
Identities = 26/41 (63%), Positives = 26/41 (63%)
Frame = +3
Query: 3 DTYXXXXXXXXXXXXXKDYTKVDRSGAYAARWVAKSLVKAG 125
DTY KD TKVDRS AYAARWVAKSLVKAG
Sbjct: 257 DTYGGWGAHGGGAFSGKDPTKVDRSAAYAARWVAKSLVKAG 297
>sp|O60198|METK_SCHPO S-adenosylmethionine synthetase (Methionine adenosyltransferase)
(AdoMet synthetase)
Length = 382
Score = 49.3 bits (116), Expect = 3e-06
Identities = 24/41 (58%), Positives = 26/41 (63%)
Frame = +3
Query: 3 DTYXXXXXXXXXXXXXKDYTKVDRSGAYAARWVAKSLVKAG 125
DTY KDY+KVDRS AYAARW+AKSLV AG
Sbjct: 256 DTYGGWGAHGGGAFSGKDYSKVDRSAAYAARWIAKSLVAAG 296
>sp|P50305|METK_CAEEL Probable S-adenosylmethionine synthetase C06E7.1 (Methionine
adenosyltransferase) (AdoMet synthetase)
Length = 404
Score = 48.5 bits (114), Expect = 5e-06
Identities = 25/41 (60%), Positives = 26/41 (63%)
Frame = +3
Query: 3 DTYXXXXXXXXXXXXXKDYTKVDRSGAYAARWVAKSLVKAG 125
DTY KD TKVDRS AYAARWVAKSLVK+G
Sbjct: 257 DTYGGWGAHGGGAFSGKDPTKVDRSAAYAARWVAKSLVKSG 297
>sp|P19358|METL_YEAST S-adenosylmethionine synthetase 2 (Methionine adenosyltransferase
2) (AdoMet synthetase 2)
Length = 384
Score = 47.8 bits (112), Expect = 8e-06
Identities = 22/25 (88%), Positives = 23/25 (92%)
Frame = +3
Query: 51 KDYTKVDRSGAYAARWVAKSLVKAG 125
KDY+KVDRS AYAARWVAKSLV AG
Sbjct: 274 KDYSKVDRSAAYAARWVAKSLVAAG 298
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,928,219
Number of Sequences: 369166
Number of extensions: 205477
Number of successful extensions: 737
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 68,354,980
effective HSP length: 15
effective length of database: 65,583,955
effective search space used: 1705182830
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)