Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_F20
(739 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P07661|CIT1_ECOLI Citrate-proton symporter (Citrate tran... 33 0.79
sp|P13017|AMPE_ECOLI Protein ampE 32 1.4
sp|P29086|YSO2_ACIAM Hypothetical transport protein in sor ... 32 1.8
sp|P60363|HPPA1_RHOPA Pyrophosphate-energized proton pump (... 31 3.9
sp|P25613|YCQ0_YEAST Hypothetical 30.7 kDa protein in RVS16... 30 5.1
sp|Q89K83|HPPA_BRAJA Pyrophosphate-energized proton pump (P... 30 6.7
sp|Q5E1R3|PURK_VIBF1 Phosphoribosylaminoimidazole carboxyla... 30 8.8
>sp|P07661|CIT1_ECOLI Citrate-proton symporter (Citrate transporter) (Citrate carrier
protein) (Citrate utilization determinant) (Citrate
utilization protein A)
Length = 431
Score = 33.1 bits (74), Expect = 0.79
Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 10/125 (8%)
Frame = +1
Query: 346 PVMICLTLIALLL-FEMKTSGTKVQEGTLMGTAILTCFGYWLGVSAIMWVLAYVGNTKLR 522
PV++ +TL+AL+ + T + T M T +L F ++ G+ V A T++
Sbjct: 302 PVLMGITLLALVTTLPVMNWLTAAPDFTRM-TLVLLWFSFFFGMYNGAMVAAL---TEVM 357
Query: 523 PVQINTVMGYALTGHCIVVLLGSLIHF---------GNSHVPFYIVWVICGGLCSARVVT 675
PV + TV G++L + G L G+ P + W++C LC T
Sbjct: 358 PVYVRTV-GFSLAFSLATAIFGGLTPAISTALVQLTGDKSSPGW--WLMCAALCGLAATT 414
Query: 676 IFWAR 690
+ +AR
Sbjct: 415 MLFAR 419
>sp|P13017|AMPE_ECOLI Protein ampE
Length = 284
Score = 32.3 bits (72), Expect = 1.4
Identities = 33/117 (28%), Positives = 46/117 (39%), Gaps = 12/117 (10%)
Frame = +1
Query: 424 TLMGTAILTCFGYWL------------GVSAIMWVLAYVGNTKLRPVQINTVMGYALTGH 567
TLMG A L + YWL G+ A++ VL +V PV++ V+ YAL GH
Sbjct: 161 TLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWV------PVRLAGVV-YALIGH 213
Query: 568 CIVVLLGSLIHFGNSHVPFYIVWVICGGLCSARVVTIFWARTPGHSERIISAITIVV 738
L G+ H Y V AR + TP + + + VV
Sbjct: 214 GEKALPAWFASLGDFHTSQYQVLTRLAQFSLAREPHVDKVETPKAAVSMAKKTSFVV 270
>sp|P29086|YSO2_ACIAM Hypothetical transport protein in sor 3'region (ORF2)
Length = 253
Score = 32.0 bits (71), Expect = 1.8
Identities = 34/113 (30%), Positives = 51/113 (45%), Gaps = 12/113 (10%)
Frame = +1
Query: 340 YGPVMICLTLIALLLFEMKTSGTKVQEGTLMGTAILTCFGYWLGV------------SAI 483
Y +I + L L+L E KT+ T+V G L+G + + + LG+ +A
Sbjct: 59 YTMPLIAIPLSTLILRE-KTTKTEVI-GILIGFSGVVIYSLNLGIYFSLIGIVLTLINAF 116
Query: 484 MWVLAYVGNTKLRPVQINTVMGYALTGHCIVVLLGSLIHFGNSHVPFYIVWVI 642
W L V KLR +V + + +LLGSLI F S + FY + I
Sbjct: 117 FWALFTVYFRKLRGFDATSV-------NAVQLLLGSLIFFTLSPIQFYFKYSI 162
>sp|P60363|HPPA1_RHOPA Pyrophosphate-energized proton pump (Pyrophosphate-energized
inorganic pyrophosphatase) (H+-PPase) (Membrane-bound
proton-translocating pyrophosphatase)
Length = 706
Score = 30.8 bits (68), Expect = 3.9
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Frame = +1
Query: 433 GTAILTCFGYWLGVSA-IMWVLAYVGNTKLRPVQINTVMGYALTGHCIVVLLGSLIHFGN 609
G A+ C L V+ I+W+ Y T RPV+ ++ ++TGH V+ G I +
Sbjct: 330 GLALFECGIVGLAVTGLIIWITEYYTGTDFRPVK--SIAQASVTGHGTNVIQGLAISMES 387
Query: 610 SHVPFYIVWVICGGLCSARVVTIF 681
+ +P + +I G L + + +F
Sbjct: 388 TALPAIV--IIAGILITYSLAGLF 409
>sp|P25613|YCQ0_YEAST Hypothetical 30.7 kDa protein in RVS161-ADP1 intergenic region
Length = 283
Score = 30.4 bits (67), Expect = 5.1
Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 7/121 (5%)
Frame = +1
Query: 301 NIKDSDIPVPSELYGPVMICLTLIALL--LFEMKTSGTKVQEGTLMGTAILTCFGYWLGV 474
N + I VP+ + G M L+ L+ ++E+ E T GTA+ + G+WL
Sbjct: 109 NARAQGITVPNVVVGCAMFYGGLVQLIAGIWEIAL------ENTFGGTALCSYGGFWLSF 162
Query: 475 SAIM--W---VLAYVGNTKLRPVQINTVMGYALTGHCIVVLLGSLIHFGNSHVPFYIVWV 639
+AI W + AY N +N +G+ L G I G + S V F++++
Sbjct: 163 AAIYIPWFGILEAYEDNES----DLNNALGFYLLGWAIFT-FGLTVCTMKSTVMFFLLFF 217
Query: 640 I 642
+
Sbjct: 218 L 218
>sp|Q89K83|HPPA_BRAJA Pyrophosphate-energized proton pump (Pyrophosphate-energized
inorganic pyrophosphatase) (H+-PPase) (Membrane-bound
proton-translocating pyrophosphatase)
Length = 706
Score = 30.0 bits (66), Expect = 6.7
Identities = 28/111 (25%), Positives = 54/111 (48%), Gaps = 1/111 (0%)
Frame = +1
Query: 352 MICLTLIALLLFEMKTSGTKVQEGTLMGTAILTCFGYWLGVSA-IMWVLAYVGNTKLRPV 528
++ L IA++++ + G K+ G ++ C L V+A I+W+ Y T RPV
Sbjct: 302 VLSLIGIAVVIYTLIGFG-KLDGVDYTGMSLFECGVVGLIVTALIIWITEYYTGTDYRPV 360
Query: 529 QINTVMGYALTGHCIVVLLGSLIHFGNSHVPFYIVWVICGGLCSARVVTIF 681
+ ++ ++TGH V+ G I + +P + +I G L + + +F
Sbjct: 361 K--SIAAASVTGHGTNVIQGLAISMEATALPAIV--IIAGILVTYSLAGLF 407
>sp|Q5E1R3|PURK_VIBF1 Phosphoribosylaminoimidazole carboxylase ATPase subunit (AIR
carboxylase) (AIRC)
Length = 370
Score = 29.6 bits (65), Expect = 8.8
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = -3
Query: 221 LAYDLNTVSALSLLSAQTVDVSLERRISEADFL 123
+AYD+N+ + L+ Q +D+SLE+ I + D +
Sbjct: 27 IAYDVNSQQIVHPLTQQPIDLSLEQAIKQVDVI 59
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,117,425
Number of Sequences: 369166
Number of extensions: 1652706
Number of successful extensions: 3902
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3901
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6631293200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)