Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_F18
(739 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O14346|YNQF_SCHPO Hypothetical protein C19C2.15c in chro... 98 2e-20
sp|P40857|YJJ7_YEAST Hypothetical 24.5 kDa protein in SAP18... 82 1e-15
sp|Q9CKJ9|RBN_PASMU tRNA-processing ribonuclease BN (RNase BN) 36 0.094
sp|P44608|RBN_HAEIN tRNA-processing ribonuclease BN (RNase BN) 33 0.61
sp|Q4QNR3|RBN_HAEI8 tRNA-processing ribonuclease BN (RNase BN) 33 0.61
>sp|O14346|YNQF_SCHPO Hypothetical protein C19C2.15c in chromosome II
Length = 208
Score = 98.2 bits (243), Expect = 2e-20
Identities = 47/107 (43%), Positives = 62/107 (57%)
Frame = +3
Query: 135 QTVAILEIIHSSLGFVKXXXXXXXXXXXXRLFLVWGICNLFPQIINKTIGIPMMVIAWSV 314
QT+AI E+ HS G V RL+LVWG+C F +I + M+IAWS+
Sbjct: 53 QTLAIAEVFHSIFGLVSSSPLTTIIQVASRLYLVWGVCYPFSYVIEGSPIYLSMIIAWSI 112
Query: 315 AEIIRYGYYACHLIDHVPYFLVWLRYTLFYVLYPVGVTGEILSILES 455
EIIRY +YA +L +P FL WLRY F +LYP+G E L +L+S
Sbjct: 113 TEIIRYAFYAFNLNGDIPAFLTWLRYNTFLILYPIGAGSEFLLVLKS 159
>sp|P40857|YJJ7_YEAST Hypothetical 24.5 kDa protein in SAP185-BCK1 intergenic region
Length = 217
Score = 82.4 bits (202), Expect = 1e-15
Identities = 55/145 (37%), Positives = 76/145 (52%), Gaps = 3/145 (2%)
Frame = +3
Query: 12 YNLALACGWAYILYKEIESLYTSNFNLVETYVIIEKPLKLFQTVAILEIIHSSLGFVKXX 191
YNL A GW+Y+LY I SLY Y + L Q AI+EII+S LG V+
Sbjct: 15 YNLLSAVGWSYLLYLVI-SLYPKVGQPAFFYQT-KNVATLVQCGAIIEIINSFLGVVRSP 72
Query: 192 XXXXXXXXXXRLFLVWGICNLFPQIIN-KTIGIPMMVIAWSVAEIIRYGYYACHLI--DH 362
RL +V GI L P +++ +++AWS+ EI+RY YY L+ +
Sbjct: 73 LLTTVAQVSSRLLVVLGIFQLLPNTSGVQSVVYISLLLAWSITEIVRYLYYFFMLVFKNG 132
Query: 363 VPYFLVWLRYTLFYVLYPVGVTGEI 437
P L+ LRY LF++LYP GV E+
Sbjct: 133 APKILILLRYNLFWILYPTGVASEL 157
>sp|Q9CKJ9|RBN_PASMU tRNA-processing ribonuclease BN (RNase BN)
Length = 316
Score = 36.2 bits (82), Expect = 0.094
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +3
Query: 231 LVWGICNLFPQIINKTIGIPMMVIAWSVAEIIRYGYYACHLIDHVPYFLVWLRYTLFYVL 410
+ W I L P +I +IG+ + A I + ++ VP+FL WL +TL Y +
Sbjct: 134 IYWLILTLGPLLIGASIGVSSYIAAMLNENISLP--FGLKILSFVPFFLTWLIFTLIYTV 191
Query: 411 YP 416
P
Sbjct: 192 VP 193
>sp|P44608|RBN_HAEIN tRNA-processing ribonuclease BN (RNase BN)
Length = 269
Score = 33.5 bits (75), Expect = 0.61
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +3
Query: 231 LVWGICNLFPQIINKTIGIPMMV-IAWSVAEIIRYGYYACHLIDHVPYFLVWLRYTLFYV 407
+ W I L P II +IGI + I + +E + G L+ VP+ W +TL Y
Sbjct: 130 IYWMILTLGPLIIGVSIGISSYIKIMFEQSEHLSLGL---KLLSFVPFLFTWFIFTLIYT 186
Query: 408 LYP 416
+ P
Sbjct: 187 VVP 189
>sp|Q4QNR3|RBN_HAEI8 tRNA-processing ribonuclease BN (RNase BN)
Length = 269
Score = 33.5 bits (75), Expect = 0.61
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +3
Query: 231 LVWGICNLFPQIINKTIGIPMMV-IAWSVAEIIRYGYYACHLIDHVPYFLVWLRYTLFYV 407
+ W I L P II +IGI + I + +E + G L+ VP+ W +TL Y
Sbjct: 130 IYWMILTLGPLIIGVSIGISSYIKIMFEQSEHLSLGL---KLLSFVPFLFTWFIFTLIYT 186
Query: 408 LYP 416
+ P
Sbjct: 187 VVP 189
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,351,575
Number of Sequences: 369166
Number of extensions: 1534794
Number of successful extensions: 2981
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2979
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6631293200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)