Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_F16
(173 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O00560|SDCB1_HUMAN Syntenin-1 (Syndecan binding protein ... 81 8e-16
sp|Q9JI92|SDCB1_RAT Syntenin-1 (Syndecan binding protein 1) 80 2e-15
sp|O08992|SDCB1_MOUSE Syntenin-1 (Syndecan binding protein ... 79 2e-15
sp|Q99JZ0|SDCB2_MOUSE Syntenin-2 (Syndecan binding protein 2) 74 8e-14
sp|Q9H190|SDCB2_HUMAN Syntenin-2 (Syndecan binding protein 2) 69 3e-12
sp|Q89AP5|DEGP_BUCBP Probable serine protease do-like precu... 37 0.014
sp|Q9HIM0|PYRC_THEAC Dihydroorotase (DHOase) 34 0.12
sp|O34358|HTRA_BACSU Probable serine protease do-like htrA 32 0.45
sp|Q14160|LAP4_HUMAN LAP4 protein (Scribble homolog protein... 32 0.59
sp|Q80U72|LAP4_MOUSE LAP4 protein (Scribble homolog protein) 32 0.59
>sp|O00560|SDCB1_HUMAN Syntenin-1 (Syndecan binding protein 1) (Melanoma
differentiation-associated protein 9) (MDA-9) (Scaffold
protein Pbp1) (Pro-TGF-alpha cytoplasmic
domain-interacting protein 18) (TACIP18)
Length = 298
Score = 80.9 bits (198), Expect = 8e-16
Identities = 37/57 (64%), Positives = 45/57 (78%)
Frame = +2
Query: 2 DVGISRAEIKQGLRRAVLCKDSKGIIGLRVQAVNKGIFVSFVNENSPASMAGLRFGD 172
DVGI RAEIKQG+R +LCKD G IGLR+++++ GIFV V NSPAS+ GLRFGD
Sbjct: 100 DVGIRRAEIKQGIREVILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGD 156
>sp|Q9JI92|SDCB1_RAT Syntenin-1 (Syndecan binding protein 1)
Length = 300
Score = 79.7 bits (195), Expect = 2e-15
Identities = 37/57 (64%), Positives = 44/57 (77%)
Frame = +2
Query: 2 DVGISRAEIKQGLRRAVLCKDSKGIIGLRVQAVNKGIFVSFVNENSPASMAGLRFGD 172
D GI RAEIKQG+R +LCKD G IGLR+++V+ GIFV V NSPAS+ GLRFGD
Sbjct: 102 DAGIRRAEIKQGIREVILCKDQDGKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGD 158
>sp|O08992|SDCB1_MOUSE Syntenin-1 (Syndecan binding protein 1) (Scaffold protein Pbp1)
Length = 299
Score = 79.3 bits (194), Expect = 2e-15
Identities = 36/57 (63%), Positives = 44/57 (77%)
Frame = +2
Query: 2 DVGISRAEIKQGLRRAVLCKDSKGIIGLRVQAVNKGIFVSFVNENSPASMAGLRFGD 172
D GI RAEIKQG+R +LCKD G IGLR+++++ GIFV V NSPAS+ GLRFGD
Sbjct: 101 DAGIRRAEIKQGIREVILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGD 157
>sp|Q99JZ0|SDCB2_MOUSE Syntenin-2 (Syndecan binding protein 2)
Length = 292
Score = 74.3 bits (181), Expect = 8e-14
Identities = 35/57 (61%), Positives = 44/57 (77%)
Frame = +2
Query: 2 DVGISRAEIKQGLRRAVLCKDSKGIIGLRVQAVNKGIFVSFVNENSPASMAGLRFGD 172
++GI RAEIK G+R LCKD +G GLR+QAV+KG+FV V N+PAS+ GLRFGD
Sbjct: 94 NLGILRAEIKPGVREIHLCKDERGKTGLRLQAVDKGLFVQLVQANTPASLVGLRFGD 150
>sp|Q9H190|SDCB2_HUMAN Syntenin-2 (Syndecan binding protein 2)
Length = 292
Score = 68.9 bits (167), Expect = 3e-12
Identities = 31/56 (55%), Positives = 42/56 (75%)
Frame = +2
Query: 5 VGISRAEIKQGLRRAVLCKDSKGIIGLRVQAVNKGIFVSFVNENSPASMAGLRFGD 172
+G+ RAEIK G+R LCKD +G GLR++ V++G+FV V N+PAS+ GLRFGD
Sbjct: 95 LGVRRAEIKPGVREIHLCKDERGKTGLRLRKVDQGLFVQLVQANTPASLVGLRFGD 150
>sp|Q89AP5|DEGP_BUCBP Probable serine protease do-like precursor
Length = 465
Score = 37.0 bits (84), Expect = 0.014
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +2
Query: 17 RAEIKQGLRRAVLCKDSKG--IIGLRVQAVNKGIFVSFVNENSPASMAGLRFGD 172
+ +I+ + +VLCK G + R+ NKGI V++VN +PA GLR D
Sbjct: 369 KQKIQSKIDSSVLCKLISGASLSNFRIHGQNKGICVNYVNNGTPAYRTGLRKND 422
Score = 28.1 bits (61), Expect = 6.5
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 9/43 (20%)
Frame = +2
Query: 71 GIIGLRVQA---------VNKGIFVSFVNENSPASMAGLRFGD 172
GI+G+ + + V++G F+S V SPA ++G++ GD
Sbjct: 280 GIVGMELNSDLAKVLKINVHRGAFISQVLSKSPADVSGIKPGD 322
>sp|Q9HIM0|PYRC_THEAC Dihydroorotase (DHOase)
Length = 414
Score = 33.9 bits (76), Expect = 0.12
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -3
Query: 120 DTNIPLLTACTRKPIIPLESLHNTALRNP 34
+T +PL A +K I+PL+ L+ TA+ NP
Sbjct: 303 ETRVPLFLALAQKKIVPLDVLYRTAIENP 331
>sp|O34358|HTRA_BACSU Probable serine protease do-like htrA
Length = 449
Score = 32.0 bits (71), Expect = 0.45
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +2
Query: 5 VGISRAEIKQGLRRAVLCKDSKGIIGLRVQAVNKGIFVSFVNENSPASMAGLRFGD 172
+G+S +++Q V +G +GL +NKG+++ V SPA AGL+ D
Sbjct: 344 IGVSMLDLEQ-----VPQNYQEGTLGLFGSQLNKGVYIREVASGSPAEKAGLKAED 394
>sp|Q14160|LAP4_HUMAN LAP4 protein (Scribble homolog protein) (hScrib)
Length = 1630
Score = 31.6 bits (70), Expect = 0.59
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = +2
Query: 101 NKGIFVSFVNENSPASMAGLRFGD 172
++GIF+S V+E PA+ AG+R GD
Sbjct: 755 DEGIFISRVSEEGPAARAGVRVGD 778
>sp|Q80U72|LAP4_MOUSE LAP4 protein (Scribble homolog protein)
Length = 1612
Score = 31.6 bits (70), Expect = 0.59
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = +2
Query: 101 NKGIFVSFVNENSPASMAGLRFGD 172
++GIF+S V+E PA+ AG+R GD
Sbjct: 741 DEGIFISRVSEEGPAARAGVRVGD 764
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,548,549
Number of Sequences: 369166
Number of extensions: 314693
Number of successful extensions: 1031
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1031
length of database: 68,354,980
effective HSP length: 30
effective length of database: 62,812,930
effective search space used: 1695949110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)