Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_F12
(371 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P74148|Y1388_SYNY3 Hypothetical protein sll1388 51 7e-07
sp|P72745|Y1101_SYNY3 Hypothetical protein slr1101 44 9e-05
sp|Q57951|Y531_METJA Hypothetical protein MJ0531 35 0.041
sp|P42297|YXIE_BACSU Hypothetical protein yxiE precursor 34 0.12
sp|Q57997|Y577_METJA Protein MJ0577 34 0.12
sp|P10506|BYR1_SCHPO Protein kinase byr1 (MAPK kinase) (MAPKK) 33 0.27
sp|P72817|Y1654_SYNY3 Hypothetical protein sll1654 32 0.59
sp|O27222|YB54_METTH Hypothetical protein MTH1154 31 0.78
sp|Q50777|YB54_METTM Hypothetical 16.1 kDa protein in MTR r... 31 1.0
sp|P87132|YFK5_SCHPO Hypothetical protein C167.05 in chromo... 31 1.0
>sp|P74148|Y1388_SYNY3 Hypothetical protein sll1388
Length = 154
Score = 51.2 bits (121), Expect = 7e-07
Identities = 25/76 (32%), Positives = 41/76 (53%)
Frame = +3
Query: 24 LQKLQAEAQTLEAKFMEQCKKNDLKCSWKTSLGSPNLNLVHAVEENNADLVVMGSRGLNL 203
L++ Q EA+ ++Q +++ + C W +G P + + +ADLVV+G RGL
Sbjct: 69 LEEQQTEAREWLQSIVQQVQEDGVACEWDVKVGEPGRWIRDMAKNWDADLVVLGRRGLKG 128
Query: 204 FRRTLVGSVSTYVTQH 251
+GSVS+YV H
Sbjct: 129 LAEVFLGSVSSYVIHH 144
>sp|P72745|Y1101_SYNY3 Hypothetical protein slr1101
Length = 108
Score = 44.3 bits (103), Expect = 9e-05
Identities = 24/77 (31%), Positives = 38/77 (49%)
Frame = +3
Query: 21 QLQKLQAEAQTLEAKFMEQCKKNDLKCSWKTSLGSPNLNLVHAVEENNADLVVMGSRGLN 200
Q Q + E K +Q D++C + LGSP + +++N+D++V+G RG
Sbjct: 20 QWQTFEQEGLDTLEKRRQQALALDIECQAEQILGSPGKIICQRAKQDNSDIIVVGHRGRW 79
Query: 201 LFRRTLVGSVSTYVTQH 251
L+GSV YV H
Sbjct: 80 GLSEILLGSVGNYVFHH 96
>sp|Q57951|Y531_METJA Hypothetical protein MJ0531
Length = 170
Score = 35.4 bits (80), Expect = 0.041
Identities = 22/73 (30%), Positives = 36/73 (49%)
Frame = +3
Query: 33 LQAEAQTLEAKFMEQCKKNDLKCSWKTSLGSPNLNLVHAVEENNADLVVMGSRGLNLFRR 212
L+ E Q K + ++ +K + G P +V E+ ADL+VMG+ G R
Sbjct: 84 LKEEGQEALKKVKKMAEEWGVKIHTEMLEGVPANEIVEFAEKKKADLIVMGTTGKTGLER 143
Query: 213 TLVGSVSTYVTQH 251
L+GSV+ V ++
Sbjct: 144 ILLGSVAERVIKN 156
>sp|P42297|YXIE_BACSU Hypothetical protein yxiE precursor
Length = 148
Score = 33.9 bits (76), Expect = 0.12
Identities = 15/43 (34%), Positives = 27/43 (62%)
Frame = +3
Query: 120 GSPNLNLVHAVEENNADLVVMGSRGLNLFRRTLVGSVSTYVTQ 248
G P +++ +E L+V+GSRG++ + ++GSVS V+Q
Sbjct: 96 GEPAHEILNHAKEKGVSLIVVGSRGISGLKEMMLGSVSHKVSQ 138
>sp|Q57997|Y577_METJA Protein MJ0577
Length = 162
Score = 33.9 bits (76), Expect = 0.12
Identities = 19/71 (26%), Positives = 33/71 (46%)
Frame = +3
Query: 30 KLQAEAQTLEAKFMEQCKKNDLKCSWKTSLGSPNLNLVHAVEENNADLVVMGSRGLNLFR 209
KL EA+ ++ + K +G P+ +V E+ D+++MGS G +
Sbjct: 76 KLTEEAKNKMENIKKELEDVGFKVKDIIVVGIPHEEIVKIAEDEGVDIIIMGSHGKTNLK 135
Query: 210 RTLVGSVSTYV 242
L+GSV+ V
Sbjct: 136 EILLGSVTENV 146
>sp|P10506|BYR1_SCHPO Protein kinase byr1 (MAPK kinase) (MAPKK)
Length = 340
Score = 32.7 bits (73), Expect = 0.27
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Frame = +3
Query: 3 DKDYTVQLQKLQAEAQTLEAKFMEQCKKNDLKCSWKTSLGSPNLNLV-HAVEENNADLVV 179
D D+ +L Q ++ FMEQC + + +W + L + +L +V H E N + +
Sbjct: 23 DNDHKEELINNQKSFESNVEAFMEQCAHMNRRPAWISDLDNSSLEVVRHLGEGNGGAVSL 82
Query: 180 MGSRGLNLFRRTL-VGSVS 233
+ R + + R+T+ VGS S
Sbjct: 83 VKHRNIFMARKTVYVGSDS 101
>sp|P72817|Y1654_SYNY3 Hypothetical protein sll1654
Length = 157
Score = 31.6 bits (70), Expect = 0.59
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +3
Query: 120 GSPNLNLVHAVEENNADLVVMGSRGLNLFRRTLVGSVSTYV 242
G + + +E NADL+VMG RGL L + SV+ V
Sbjct: 105 GMASFTICDVADEVNADLIVMGCRGLGLTTEGVAESVTARV 145
>sp|O27222|YB54_METTH Hypothetical protein MTH1154
Length = 146
Score = 31.2 bits (69), Expect = 0.78
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = +3
Query: 120 GSPNLNLVHAVEENNADLVVMGSRGLNLFRRTLVGSVSTYVTQH 251
G P +V EE + D++VMG+ G +L + L+GSVS V +
Sbjct: 93 GDPADEIVKVAEEEDVDVIVMGT-GKSLVDKHLLGSVSEKVVHY 135
>sp|Q50777|YB54_METTM Hypothetical 16.1 kDa protein in MTR region (ORF143)
Length = 143
Score = 30.8 bits (68), Expect = 1.0
Identities = 16/44 (36%), Positives = 27/44 (61%)
Frame = +3
Query: 120 GSPNLNLVHAVEENNADLVVMGSRGLNLFRRTLVGSVSTYVTQH 251
G+P +V EE + D+++MG+ G +L + L+GSVS V +
Sbjct: 90 GNPADEIVKLAEEEDVDVIIMGT-GKSLVDKHLLGSVSEKVVHY 132
>sp|P87132|YFK5_SCHPO Hypothetical protein C167.05 in chromosome I
Length = 601
Score = 30.8 bits (68), Expect = 1.0
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 11/89 (12%)
Frame = +3
Query: 9 DYTVQLQKLQAEAQTLEAKFMEQCKKNDLKCSWKTSLG-SPNLNLVH----------AVE 155
D + + K + E++ LE +E+ K LK KT L N+ ++H ++
Sbjct: 471 DPSARAVKDRMESEQLET--LEKITKYILKLLSKTVLEVEVNIEVIHHEKAKHLIIEMID 528
Query: 156 ENNADLVVMGSRGLNLFRRTLVGSVSTYV 242
LVVMGSRG + + L+GS S Y+
Sbjct: 529 YIEPSLVVMGSRGRSHLKGVLLGSFSNYL 557
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,686,833
Number of Sequences: 369166
Number of extensions: 558298
Number of successful extensions: 1462
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1462
length of database: 68,354,980
effective HSP length: 90
effective length of database: 51,728,830
effective search space used: 1707051390
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)