Planarian EST Database


Dr_sW_014_F09

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_014_F09
         (493 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P18288|TBAT_ONCMY  Tubulin alpha chain, testis-specific        292   3e-79
sp|P05214|TBA3_MOUSE  Tubulin alpha-3/alpha-7 chain (Alpha-t...   292   3e-79
sp|P02553|TBA_LYTPI  Tubulin alpha chain                          292   3e-79
sp|P41383|TBA2_PATVU  Tubulin alpha-2/alpha-4 chain               291   6e-79
sp|Q8T6A5|TBA1_APLCA  Tubulin alpha-1 chain                       291   6e-79
sp|P68369|TBA1_MOUSE  Tubulin alpha-1 chain (Alpha-tubulin 1...   290   1e-78
sp|P02552|TBA1_CHICK  Tubulin alpha-1 chain                       290   1e-78
sp|P06603|TBA1_DROME  Tubulin alpha-1 chain                       290   1e-78
sp|P52273|TBA_BOMMO  Tubulin alpha chain                          290   1e-78
sp|P18258|TBA1_PARLI  Tubulin alpha-1 chain                       290   2e-78
>sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific
          Length = 450

 Score =  292 bits (748), Expect = 3e-79
 Identities = 138/139 (99%), Positives = 139/139 (100%)
 Frame = +2

Query: 2   MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 181
           MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT
Sbjct: 302 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 361

Query: 182 VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA 361
           VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA
Sbjct: 362 VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA 421

Query: 362 REDLAALEKDYEEVGIDSV 418
           REDLAALEKDYEEVG+DSV
Sbjct: 422 REDLAALEKDYEEVGVDSV 440
>sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-tubulin 3/7) (Alpha-tubulin
           isotype M-alpha-3/7)
 sp|Q68FR8|TBA3_RAT Tubulin alpha-3 chain (Alpha-tubulin 3)
 sp|Q13748|TBA2_HUMAN Tubulin alpha-2 chain (Alpha-tubulin 2)
          Length = 450

 Score =  292 bits (748), Expect = 3e-79
 Identities = 138/139 (99%), Positives = 139/139 (100%)
 Frame = +2

Query: 2   MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 181
           MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT
Sbjct: 302 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 361

Query: 182 VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA 361
           VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA
Sbjct: 362 VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA 421

Query: 362 REDLAALEKDYEEVGIDSV 418
           REDLAALEKDYEEVG+DSV
Sbjct: 422 REDLAALEKDYEEVGVDSV 440
>sp|P02553|TBA_LYTPI Tubulin alpha chain
          Length = 161

 Score =  292 bits (748), Expect = 3e-79
 Identities = 138/139 (99%), Positives = 139/139 (100%)
 Frame = +2

Query: 2   MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 181
           MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT
Sbjct: 12  MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 71

Query: 182 VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA 361
           VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA
Sbjct: 72  VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA 131

Query: 362 REDLAALEKDYEEVGIDSV 418
           REDLAALEKDYEEVG+DSV
Sbjct: 132 REDLAALEKDYEEVGVDSV 150
>sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain
          Length = 452

 Score =  291 bits (745), Expect = 6e-79
 Identities = 137/139 (98%), Positives = 139/139 (100%)
 Frame = +2

Query: 2   MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 181
           MVKCDPRHGKYM+CCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT
Sbjct: 302 MVKCDPRHGKYMSCCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 361

Query: 182 VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA 361
           VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA
Sbjct: 362 VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA 421

Query: 362 REDLAALEKDYEEVGIDSV 418
           REDLAALEKDYEEVG+DSV
Sbjct: 422 REDLAALEKDYEEVGVDSV 440
>sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain
          Length = 451

 Score =  291 bits (745), Expect = 6e-79
 Identities = 137/139 (98%), Positives = 139/139 (100%)
 Frame = +2

Query: 2   MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 181
           +VKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT
Sbjct: 302 LVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 361

Query: 182 VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA 361
           VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA
Sbjct: 362 VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA 421

Query: 362 REDLAALEKDYEEVGIDSV 418
           REDLAALEKDYEEVG+DSV
Sbjct: 422 REDLAALEKDYEEVGVDSV 440
>sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin isotype
           M-alpha-1)
 sp|P68362|TBA2_CRIGR Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin II)
 sp|Q71U36|TBA3_HUMAN Tubulin alpha-3 chain (Alpha-tubulin 3) (Tubulin B-alpha-1)
 sp|P68370|TBA1_RAT Tubulin alpha-1 chain (Alpha-tubulin 1)
          Length = 451

 Score =  290 bits (743), Expect = 1e-78
 Identities = 136/139 (97%), Positives = 139/139 (100%)
 Frame = +2

Query: 2   MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 181
           MVKCDPRHGKYMACC+LYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT
Sbjct: 302 MVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 361

Query: 182 VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA 361
           VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA
Sbjct: 362 VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA 421

Query: 362 REDLAALEKDYEEVGIDSV 418
           RED+AALEKDYEEVG+DSV
Sbjct: 422 REDMAALEKDYEEVGVDSV 440
>sp|P02552|TBA1_CHICK Tubulin alpha-1 chain
          Length = 412

 Score =  290 bits (743), Expect = 1e-78
 Identities = 136/139 (97%), Positives = 139/139 (100%)
 Frame = +2

Query: 2   MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 181
           MVKCDPRHGKYMACC+LYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT
Sbjct: 263 MVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 322

Query: 182 VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA 361
           VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA
Sbjct: 323 VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA 382

Query: 362 REDLAALEKDYEEVGIDSV 418
           RED+AALEKDYEEVG+DSV
Sbjct: 383 REDMAALEKDYEEVGVDSV 401
>sp|P06603|TBA1_DROME Tubulin alpha-1 chain
          Length = 450

 Score =  290 bits (742), Expect = 1e-78
 Identities = 137/138 (99%), Positives = 138/138 (100%)
 Frame = +2

Query: 2   MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 181
           MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT
Sbjct: 302 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 361

Query: 182 VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA 361
           VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA
Sbjct: 362 VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA 421

Query: 362 REDLAALEKDYEEVGIDS 415
           REDLAALEKDYEEVG+DS
Sbjct: 422 REDLAALEKDYEEVGMDS 439
>sp|P52273|TBA_BOMMO Tubulin alpha chain
          Length = 450

 Score =  290 bits (742), Expect = 1e-78
 Identities = 137/138 (99%), Positives = 138/138 (100%)
 Frame = +2

Query: 2   MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 181
           MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT
Sbjct: 302 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 361

Query: 182 VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA 361
           VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA
Sbjct: 362 VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA 421

Query: 362 REDLAALEKDYEEVGIDS 415
           REDLAALEKDYEEVG+DS
Sbjct: 422 REDLAALEKDYEEVGMDS 439
>sp|P18258|TBA1_PARLI Tubulin alpha-1 chain
          Length = 452

 Score =  290 bits (741), Expect = 2e-78
 Identities = 136/138 (98%), Positives = 138/138 (100%)
 Frame = +2

Query: 2   MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 181
           MVKCDPRHGKYMACC+LYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT
Sbjct: 302 MVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 361

Query: 182 VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA 361
           VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA
Sbjct: 362 VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA 421

Query: 362 REDLAALEKDYEEVGIDS 415
           REDLAALEKDYEEVG+DS
Sbjct: 422 REDLAALEKDYEEVGVDS 439
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,831,110
Number of Sequences: 369166
Number of extensions: 894423
Number of successful extensions: 2946
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2746
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3020232610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)