Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_F09
(493 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific 292 3e-79
sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-t... 292 3e-79
sp|P02553|TBA_LYTPI Tubulin alpha chain 292 3e-79
sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain 291 6e-79
sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain 291 6e-79
sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1... 290 1e-78
sp|P02552|TBA1_CHICK Tubulin alpha-1 chain 290 1e-78
sp|P06603|TBA1_DROME Tubulin alpha-1 chain 290 1e-78
sp|P52273|TBA_BOMMO Tubulin alpha chain 290 1e-78
sp|P18258|TBA1_PARLI Tubulin alpha-1 chain 290 2e-78
>sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific
Length = 450
Score = 292 bits (748), Expect = 3e-79
Identities = 138/139 (99%), Positives = 139/139 (100%)
Frame = +2
Query: 2 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 181
MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT
Sbjct: 302 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 361
Query: 182 VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA 361
VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA
Sbjct: 362 VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA 421
Query: 362 REDLAALEKDYEEVGIDSV 418
REDLAALEKDYEEVG+DSV
Sbjct: 422 REDLAALEKDYEEVGVDSV 440
>sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-tubulin 3/7) (Alpha-tubulin
isotype M-alpha-3/7)
sp|Q68FR8|TBA3_RAT Tubulin alpha-3 chain (Alpha-tubulin 3)
sp|Q13748|TBA2_HUMAN Tubulin alpha-2 chain (Alpha-tubulin 2)
Length = 450
Score = 292 bits (748), Expect = 3e-79
Identities = 138/139 (99%), Positives = 139/139 (100%)
Frame = +2
Query: 2 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 181
MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT
Sbjct: 302 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 361
Query: 182 VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA 361
VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA
Sbjct: 362 VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA 421
Query: 362 REDLAALEKDYEEVGIDSV 418
REDLAALEKDYEEVG+DSV
Sbjct: 422 REDLAALEKDYEEVGVDSV 440
>sp|P02553|TBA_LYTPI Tubulin alpha chain
Length = 161
Score = 292 bits (748), Expect = 3e-79
Identities = 138/139 (99%), Positives = 139/139 (100%)
Frame = +2
Query: 2 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 181
MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT
Sbjct: 12 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 71
Query: 182 VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA 361
VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA
Sbjct: 72 VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA 131
Query: 362 REDLAALEKDYEEVGIDSV 418
REDLAALEKDYEEVG+DSV
Sbjct: 132 REDLAALEKDYEEVGVDSV 150
>sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain
Length = 452
Score = 291 bits (745), Expect = 6e-79
Identities = 137/139 (98%), Positives = 139/139 (100%)
Frame = +2
Query: 2 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 181
MVKCDPRHGKYM+CCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT
Sbjct: 302 MVKCDPRHGKYMSCCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 361
Query: 182 VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA 361
VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA
Sbjct: 362 VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA 421
Query: 362 REDLAALEKDYEEVGIDSV 418
REDLAALEKDYEEVG+DSV
Sbjct: 422 REDLAALEKDYEEVGVDSV 440
>sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain
Length = 451
Score = 291 bits (745), Expect = 6e-79
Identities = 137/139 (98%), Positives = 139/139 (100%)
Frame = +2
Query: 2 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 181
+VKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT
Sbjct: 302 LVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 361
Query: 182 VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA 361
VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA
Sbjct: 362 VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA 421
Query: 362 REDLAALEKDYEEVGIDSV 418
REDLAALEKDYEEVG+DSV
Sbjct: 422 REDLAALEKDYEEVGVDSV 440
>sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin isotype
M-alpha-1)
sp|P68362|TBA2_CRIGR Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin II)
sp|Q71U36|TBA3_HUMAN Tubulin alpha-3 chain (Alpha-tubulin 3) (Tubulin B-alpha-1)
sp|P68370|TBA1_RAT Tubulin alpha-1 chain (Alpha-tubulin 1)
Length = 451
Score = 290 bits (743), Expect = 1e-78
Identities = 136/139 (97%), Positives = 139/139 (100%)
Frame = +2
Query: 2 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 181
MVKCDPRHGKYMACC+LYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT
Sbjct: 302 MVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 361
Query: 182 VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA 361
VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA
Sbjct: 362 VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA 421
Query: 362 REDLAALEKDYEEVGIDSV 418
RED+AALEKDYEEVG+DSV
Sbjct: 422 REDMAALEKDYEEVGVDSV 440
>sp|P02552|TBA1_CHICK Tubulin alpha-1 chain
Length = 412
Score = 290 bits (743), Expect = 1e-78
Identities = 136/139 (97%), Positives = 139/139 (100%)
Frame = +2
Query: 2 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 181
MVKCDPRHGKYMACC+LYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT
Sbjct: 263 MVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 322
Query: 182 VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA 361
VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA
Sbjct: 323 VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA 382
Query: 362 REDLAALEKDYEEVGIDSV 418
RED+AALEKDYEEVG+DSV
Sbjct: 383 REDMAALEKDYEEVGVDSV 401
>sp|P06603|TBA1_DROME Tubulin alpha-1 chain
Length = 450
Score = 290 bits (742), Expect = 1e-78
Identities = 137/138 (99%), Positives = 138/138 (100%)
Frame = +2
Query: 2 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 181
MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT
Sbjct: 302 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 361
Query: 182 VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA 361
VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA
Sbjct: 362 VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA 421
Query: 362 REDLAALEKDYEEVGIDS 415
REDLAALEKDYEEVG+DS
Sbjct: 422 REDLAALEKDYEEVGMDS 439
>sp|P52273|TBA_BOMMO Tubulin alpha chain
Length = 450
Score = 290 bits (742), Expect = 1e-78
Identities = 137/138 (99%), Positives = 138/138 (100%)
Frame = +2
Query: 2 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 181
MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT
Sbjct: 302 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 361
Query: 182 VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA 361
VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA
Sbjct: 362 VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA 421
Query: 362 REDLAALEKDYEEVGIDS 415
REDLAALEKDYEEVG+DS
Sbjct: 422 REDLAALEKDYEEVGMDS 439
>sp|P18258|TBA1_PARLI Tubulin alpha-1 chain
Length = 452
Score = 290 bits (741), Expect = 2e-78
Identities = 136/138 (98%), Positives = 138/138 (100%)
Frame = +2
Query: 2 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 181
MVKCDPRHGKYMACC+LYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT
Sbjct: 302 MVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 361
Query: 182 VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA 361
VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA
Sbjct: 362 VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA 421
Query: 362 REDLAALEKDYEEVGIDS 415
REDLAALEKDYEEVG+DS
Sbjct: 422 REDLAALEKDYEEVGVDS 439
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,831,110
Number of Sequences: 369166
Number of extensions: 894423
Number of successful extensions: 2946
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2746
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3020232610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)