Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_E16
(364 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9UVX4|ACT_COPCI Actin 143 1e-34
sp|Q26065|ACT_PLAMG Actin, adductor muscle 143 1e-34
sp|O16808|ACT_MAYDE Actin 143 1e-34
sp|P53464|ACTM_HELTB Actin, cytoskeletal (M) 143 1e-34
sp|P53463|ACTM_HELER Actin, cytoskeletal (M) 143 1e-34
sp|P17299|ACT3_ORYSA Actin-3 142 2e-34
sp|P91754|ACT_LUMRU Actin 142 3e-34
sp|P92176|ACT2_LUMTE Actin-2 142 3e-34
sp|P92182|ACT1_LUMTE Actin-1 142 3e-34
sp|P53458|ACT5_DIPDE Actin-5 142 3e-34
>sp|Q9UVX4|ACT_COPCI Actin
Length = 375
Score = 143 bits (361), Expect = 1e-34
Identities = 83/122 (68%), Positives = 92/122 (75%), Gaps = 8/122 (6%)
Frame = +1
Query: 22 APEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSG 201
APEEHPVLLTEAPLNPKANREKMTQIMFETFNAPA YVAIQAVLSLYASGRTTGIVLDSG
Sbjct: 97 APEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSG 156
Query: 202 DGVTHTVPIYD-VMLYHMLF*D*ILLRRSTD-IVRCTDE-----LQSTH*EIVR-YQREL 357
DGVTHTVPIY+ L H + + R TD +++C E + EIVR + +L
Sbjct: 157 DGVTHTVPIYEGFALPHAILRLDLAGRDLTDYLIKCLGERGYPFTTTAEREIVRDIKEKL 216
Query: 358 CY 363
CY
Sbjct: 217 CY 218
>sp|Q26065|ACT_PLAMG Actin, adductor muscle
Length = 376
Score = 143 bits (360), Expect = 1e-34
Identities = 70/71 (98%), Positives = 71/71 (100%)
Frame = +1
Query: 22 APEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSG 201
APEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSG
Sbjct: 98 APEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSG 157
Query: 202 DGVTHTVPIYD 234
DGVTHTVPIY+
Sbjct: 158 DGVTHTVPIYE 168
Score = 29.6 bits (65), Expect = 2.3
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 237 YALPHAILRLDLA 275
YALPHAILRLDLA
Sbjct: 170 YALPHAILRLDLA 182
>sp|O16808|ACT_MAYDE Actin
Length = 376
Score = 143 bits (360), Expect = 1e-34
Identities = 70/71 (98%), Positives = 71/71 (100%)
Frame = +1
Query: 22 APEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSG 201
APEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSG
Sbjct: 98 APEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSG 157
Query: 202 DGVTHTVPIYD 234
DGVTHTVPIY+
Sbjct: 158 DGVTHTVPIYE 168
Score = 29.6 bits (65), Expect = 2.3
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 237 YALPHAILRLDLA 275
YALPHAILRLDLA
Sbjct: 170 YALPHAILRLDLA 182
>sp|P53464|ACTM_HELTB Actin, cytoskeletal (M)
Length = 376
Score = 143 bits (360), Expect = 1e-34
Identities = 70/71 (98%), Positives = 71/71 (100%)
Frame = +1
Query: 22 APEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSG 201
APEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSG
Sbjct: 98 APEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSG 157
Query: 202 DGVTHTVPIYD 234
DGVTHTVPIY+
Sbjct: 158 DGVTHTVPIYE 168
Score = 29.6 bits (65), Expect = 2.3
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 237 YALPHAILRLDLA 275
YALPHAILRLDLA
Sbjct: 170 YALPHAILRLDLA 182
>sp|P53463|ACTM_HELER Actin, cytoskeletal (M)
Length = 376
Score = 143 bits (360), Expect = 1e-34
Identities = 70/71 (98%), Positives = 71/71 (100%)
Frame = +1
Query: 22 APEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSG 201
APEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSG
Sbjct: 98 APEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSG 157
Query: 202 DGVTHTVPIYD 234
DGVTHTVPIY+
Sbjct: 158 DGVTHTVPIYE 168
Score = 29.6 bits (65), Expect = 2.3
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 237 YALPHAILRLDLA 275
YALPHAILRLDLA
Sbjct: 170 YALPHAILRLDLA 182
>sp|P17299|ACT3_ORYSA Actin-3
Length = 377
Score = 142 bits (359), Expect = 2e-34
Identities = 69/71 (97%), Positives = 71/71 (100%)
Frame = +1
Query: 22 APEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSG 201
APEEHP+LLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSG
Sbjct: 99 APEEHPILLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSG 158
Query: 202 DGVTHTVPIYD 234
DGVTHTVPIY+
Sbjct: 159 DGVTHTVPIYE 169
Score = 32.3 bits (72), Expect = 0.35
Identities = 20/40 (50%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Frame = +3
Query: 237 YALPHAILRLDLAEKIYRHCEM----YRRVTVHTLRDREI 344
YALPHAILRLDLA + C M R + T +REI
Sbjct: 171 YALPHAILRLDLAGRDLTDCLMKILTERGYSFTTTAEREI 210
>sp|P91754|ACT_LUMRU Actin
Length = 372
Score = 142 bits (357), Expect = 3e-34
Identities = 69/71 (97%), Positives = 71/71 (100%)
Frame = +1
Query: 22 APEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSG 201
APEEHPVLLTEAPLNPKANREKMTQIMFETFN+PAMYVAIQAVLSLYASGRTTGIVLDSG
Sbjct: 94 APEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSG 153
Query: 202 DGVTHTVPIYD 234
DGVTHTVPIY+
Sbjct: 154 DGVTHTVPIYE 164
Score = 29.6 bits (65), Expect = 2.3
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 237 YALPHAILRLDLA 275
YALPHAILRLDLA
Sbjct: 166 YALPHAILRLDLA 178
>sp|P92176|ACT2_LUMTE Actin-2
Length = 376
Score = 142 bits (357), Expect = 3e-34
Identities = 69/71 (97%), Positives = 71/71 (100%)
Frame = +1
Query: 22 APEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSG 201
APEEHPVLLTEAPLNPKANREKMTQIMFETFN+PAMYVAIQAVLSLYASGRTTGIVLDSG
Sbjct: 98 APEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSG 157
Query: 202 DGVTHTVPIYD 234
DGVTHTVPIY+
Sbjct: 158 DGVTHTVPIYE 168
Score = 29.6 bits (65), Expect = 2.3
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 237 YALPHAILRLDLA 275
YALPHAILRLDLA
Sbjct: 170 YALPHAILRLDLA 182
>sp|P92182|ACT1_LUMTE Actin-1
Length = 376
Score = 142 bits (357), Expect = 3e-34
Identities = 69/71 (97%), Positives = 71/71 (100%)
Frame = +1
Query: 22 APEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSG 201
APEEHPVLLTEAPLNPKANREKMTQIMFETFN+PAMYVAIQAVLSLYASGRTTGIVLDSG
Sbjct: 98 APEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSG 157
Query: 202 DGVTHTVPIYD 234
DGVTHTVPIY+
Sbjct: 158 DGVTHTVPIYE 168
Score = 29.6 bits (65), Expect = 2.3
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 237 YALPHAILRLDLA 275
YALPHAILRLDLA
Sbjct: 170 YALPHAILRLDLA 182
>sp|P53458|ACT5_DIPDE Actin-5
Length = 371
Score = 142 bits (357), Expect = 3e-34
Identities = 69/71 (97%), Positives = 71/71 (100%)
Frame = +1
Query: 22 APEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSG 201
APEEHPVLLTEAPLNPKANREKMTQIMFETFN+PAMYVAIQAVLSLYASGRTTGIVLDSG
Sbjct: 93 APEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSG 152
Query: 202 DGVTHTVPIYD 234
DGVTHTVPIY+
Sbjct: 153 DGVTHTVPIYE 163
Score = 29.6 bits (65), Expect = 2.3
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 237 YALPHAILRLDLA 275
YALPHAILRLDLA
Sbjct: 165 YALPHAILRLDLA 177
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,438,795
Number of Sequences: 369166
Number of extensions: 762863
Number of successful extensions: 2476
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2454
length of database: 68,354,980
effective HSP length: 87
effective length of database: 52,283,035
effective search space used: 1725340155
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)