Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_E05
(677 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P31009|RS2_DROME 40S ribosomal protein S2 (Strings of pe... 320 2e-87
sp|P49154|RS2_URECA 40S ribosomal protein S2 313 2e-85
sp|Q90YS3|RS2_ICTPU 40S ribosomal protein S2 308 1e-83
sp|P15880|RS2_HUMAN 40S ribosomal protein S2 (S4) (LLRep3 p... 306 3e-83
sp|P27952|RS2_RAT 40S ribosomal protein S2 >gi|46397787|sp|... 306 3e-83
sp|P46791|RS2_CRIGR 40S ribosomal protein S2 306 3e-83
sp|O18789|RS2_BOVIN 40S ribosomal protein S2 304 1e-82
sp|P51403|RS2_CAEEL 40S ribosomal protein S2 299 5e-81
sp|O74892|RS2_SCHPO 40S ribosomal protein S2 290 2e-78
sp|P27685|RS2_DICDI 40S ribosomal protein S2 (S4) (LLRep3 p... 281 8e-76
>sp|P31009|RS2_DROME 40S ribosomal protein S2 (Strings of pearls protein)
Length = 267
Score = 320 bits (821), Expect = 2e-87
Identities = 158/204 (77%), Positives = 175/204 (85%), Gaps = 1/204 (0%)
Frame = +2
Query: 2 PCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFL-PELKDEVLSIKPVQKQTRAGQR 178
P TKLGRLV+ GK+K+LEEIY+YS+PIKE EIID+FL LKDEVL I PVQKQTRAGQR
Sbjct: 45 PVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQR 104
Query: 179 TRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLSVIPVRKGYWGNKLGDTHTVP 358
TRFKA VA+GDNNGH+GLGVKC+KEVATAIRGAI AKLSV+PVR+GYWGNK+G HTVP
Sbjct: 105 TRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVP 164
Query: 359 CKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQDVYTSANGQTATLENFAKATY 538
CKVTGKCGSVSVRLIPAPRGTGIV APV KKLL+MAGI+D YTSA G T TL NFAKATY
Sbjct: 165 CKVTGKCGSVSVRLIPAPRGTGIVSAPVPKKLLTMAGIEDCYTSARGSTGTLGNFAKATY 224
Query: 539 MAIRRTYEYLSPDLWNATPKHTKP 610
AI +TY YL+PDLW P + P
Sbjct: 225 AAIAKTYAYLTPDLWKEMPLGSTP 248
>sp|P49154|RS2_URECA 40S ribosomal protein S2
Length = 278
Score = 313 bits (803), Expect = 2e-85
Identities = 158/198 (79%), Positives = 171/198 (86%), Gaps = 1/198 (0%)
Frame = +2
Query: 2 PCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFLPE-LKDEVLSIKPVQKQTRAGQR 178
P TKLGRLVK K+KTLEEIY++S+PIKE EIID+FL + LKDEVL I PVQKQTRAGQR
Sbjct: 48 PVTKLGRLVKDMKIKTLEEIYLFSLPIKEFEIIDFFLGDALKDEVLKIMPVQKQTRAGQR 107
Query: 179 TRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLSVIPVRKGYWGNKLGDTHTVP 358
TRFKA VA+GD NGHVGLGVKC+KEVATAIRGAI AKLSV+PVR+GYWGNK+G HTVP
Sbjct: 108 TRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVP 167
Query: 359 CKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQDVYTSANGQTATLENFAKATY 538
CKVTGKCGSV VRLIPAPRGTGIV APV KKLL+MAGI D YTSA GQTATL NFAKATY
Sbjct: 168 CKVTGKCGSVLVRLIPAPRGTGIVSAPVPKKLLAMAGIDDCYTSARGQTATLGNFAKATY 227
Query: 539 MAIRRTYEYLSPDLWNAT 592
AI TY YL+PDLW T
Sbjct: 228 AAIAATYSYLTPDLWRET 245
>sp|Q90YS3|RS2_ICTPU 40S ribosomal protein S2
Length = 277
Score = 308 bits (788), Expect = 1e-83
Identities = 155/198 (78%), Positives = 170/198 (85%), Gaps = 1/198 (0%)
Frame = +2
Query: 2 PCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFLPE-LKDEVLSIKPVQKQTRAGQR 178
P TKLGRLVK K+K+LEEIY+YS+PIKE+EIID+FL LKDEVL I PVQKQTRAGQR
Sbjct: 47 PVTKLGRLVKDMKIKSLEEIYLYSLPIKESEIIDFFLGSALKDEVLKIMPVQKQTRAGQR 106
Query: 179 TRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLSVIPVRKGYWGNKLGDTHTVP 358
TRFKA VA+GD NGHVGLGVKC+KEVATAIRGAI AKLS+IPVR+GYWGNK+G HTVP
Sbjct: 107 TRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIIPVRRGYWGNKIGKPHTVP 166
Query: 359 CKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQDVYTSANGQTATLENFAKATY 538
CKVTG+CGSV VRLIPAPRGTGIV APV KKLL MAGI D YTSA G TATL NFAKAT+
Sbjct: 167 CKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATF 226
Query: 539 MAIRRTYEYLSPDLWNAT 592
AI +TY YL+PDLW T
Sbjct: 227 DAISKTYSYLTPDLWKET 244
>sp|P15880|RS2_HUMAN 40S ribosomal protein S2 (S4) (LLRep3 protein)
Length = 293
Score = 306 bits (784), Expect = 3e-83
Identities = 153/198 (77%), Positives = 170/198 (85%), Gaps = 1/198 (0%)
Frame = +2
Query: 2 PCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFL-PELKDEVLSIKPVQKQTRAGQR 178
P TKLGRLVK K+K+LEEIY++S+PIKE+EIID+FL LKDEVL I PVQKQTRAGQR
Sbjct: 62 PVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQR 121
Query: 179 TRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLSVIPVRKGYWGNKLGDTHTVP 358
TRFKA VA+GD NGHVGLGVKC+KEVATAIRGAI AKLS++PVR+GYWGNK+G HTVP
Sbjct: 122 TRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVP 181
Query: 359 CKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQDVYTSANGQTATLENFAKATY 538
CKVTG+CGSV VRLIPAPRGTGIV APV KKLL MAGI D YTSA G TATL NFAKAT+
Sbjct: 182 CKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATF 241
Query: 539 MAIRRTYEYLSPDLWNAT 592
AI +TY YL+PDLW T
Sbjct: 242 DAISKTYSYLTPDLWKET 259
>sp|P27952|RS2_RAT 40S ribosomal protein S2
sp|P25444|RS2_MOUSE 40S ribosomal protein S2 (S4) (LLRep3 protein)
Length = 293
Score = 306 bits (784), Expect = 3e-83
Identities = 153/198 (77%), Positives = 170/198 (85%), Gaps = 1/198 (0%)
Frame = +2
Query: 2 PCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFL-PELKDEVLSIKPVQKQTRAGQR 178
P TKLGRLVK K+K+LEEIY++S+PIKE+EIID+FL LKDEVL I PVQKQTRAGQR
Sbjct: 62 PVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQR 121
Query: 179 TRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLSVIPVRKGYWGNKLGDTHTVP 358
TRFKA VA+GD NGHVGLGVKC+KEVATAIRGAI AKLS++PVR+GYWGNK+G HTVP
Sbjct: 122 TRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVP 181
Query: 359 CKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQDVYTSANGQTATLENFAKATY 538
CKVTG+CGSV VRLIPAPRGTGIV APV KKLL MAGI D YTSA G TATL NFAKAT+
Sbjct: 182 CKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATF 241
Query: 539 MAIRRTYEYLSPDLWNAT 592
AI +TY YL+PDLW T
Sbjct: 242 DAISKTYSYLTPDLWKET 259
>sp|P46791|RS2_CRIGR 40S ribosomal protein S2
Length = 202
Score = 306 bits (784), Expect = 3e-83
Identities = 153/198 (77%), Positives = 170/198 (85%), Gaps = 1/198 (0%)
Frame = +2
Query: 2 PCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFL-PELKDEVLSIKPVQKQTRAGQR 178
P TKLGRLVK K+K+LEEIY++S+PIKE+EIID+FL LKDEVL I PVQKQTRAGQR
Sbjct: 2 PVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQR 61
Query: 179 TRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLSVIPVRKGYWGNKLGDTHTVP 358
TRFKA VA+GD NGHVGLGVKC+KEVATAIRGAI AKLS++PVR+GYWGNK+G HTVP
Sbjct: 62 TRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVP 121
Query: 359 CKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQDVYTSANGQTATLENFAKATY 538
CKVTG+CGSV VRLIPAPRGTGIV APV KKLL MAGI D YTSA G TATL NFAKAT+
Sbjct: 122 CKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATF 181
Query: 539 MAIRRTYEYLSPDLWNAT 592
AI +TY YL+PDLW T
Sbjct: 182 DAISKTYSYLTPDLWKET 199
>sp|O18789|RS2_BOVIN 40S ribosomal protein S2
Length = 286
Score = 304 bits (779), Expect = 1e-82
Identities = 152/198 (76%), Positives = 169/198 (85%), Gaps = 1/198 (0%)
Frame = +2
Query: 2 PCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFL-PELKDEVLSIKPVQKQTRAGQR 178
P TKLGRLVK K+K+LEEIY++S+PIKE+EIID+FL LKDEVL I PVQKQTRAGQR
Sbjct: 55 PVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQR 114
Query: 179 TRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLSVIPVRKGYWGNKLGDTHTVP 358
TRFKA VA+GD NGHVGLGVKC+KEVATAIRGAI AKLS++PVR+GYWGNK+G HTVP
Sbjct: 115 TRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVP 174
Query: 359 CKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQDVYTSANGQTATLENFAKATY 538
CKVTG+CGSV VRLIP PRGTGIV APV KKLL MAGI D YTSA G TATL NFAKAT+
Sbjct: 175 CKVTGRCGSVLVRLIPPPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATF 234
Query: 539 MAIRRTYEYLSPDLWNAT 592
AI +TY YL+PDLW T
Sbjct: 235 DAISKTYSYLTPDLWKET 252
>sp|P51403|RS2_CAEEL 40S ribosomal protein S2
Length = 272
Score = 299 bits (765), Expect = 5e-81
Identities = 149/203 (73%), Positives = 164/203 (80%)
Frame = +2
Query: 2 PCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFLPELKDEVLSIKPVQKQTRAGQRT 181
P TKLGRLVK K+ TLEEIY+ S+PIKE EIID LKDEVL I PVQKQT AGQRT
Sbjct: 59 PVTKLGRLVKEKKITTLEEIYLNSLPIKEFEIIDALCSNLKDEVLKISPVQKQTTAGQRT 118
Query: 182 RFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLSVIPVRKGYWGNKLGDTHTVPC 361
RFKA VA+GD+ GHVGLGVKC+KEVATAIRGAI AKL+V+PVR+GYWGNK+G HTVPC
Sbjct: 119 RFKAFVAIGDHAGHVGLGVKCSKEVATAIRGAIVAAKLAVVPVRRGYWGNKIGLPHTVPC 178
Query: 362 KVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQDVYTSANGQTATLENFAKATYM 541
KVTGKC SV VRLIPAPRGTGIV APV KKLL MAGI+D YT+A G TATL NFAKATY
Sbjct: 179 KVTGKCASVMVRLIPAPRGTGIVSAPVPKKLLHMAGIEDCYTAAKGSTATLGNFAKATYA 238
Query: 542 AIRRTYEYLSPDLWNATPKHTKP 610
A++RTY YL+PDLW P
Sbjct: 239 ALQRTYSYLTPDLWKEEALEKSP 261
>sp|O74892|RS2_SCHPO 40S ribosomal protein S2
Length = 253
Score = 290 bits (743), Expect = 2e-78
Identities = 136/204 (66%), Positives = 164/204 (80%)
Frame = +2
Query: 2 PCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFLPELKDEVLSIKPVQKQTRAGQRT 181
P TKLGRLVKAGK+K++EEIY+YS+PIKE +I+DYFLP L DEV+ + PVQKQTRAGQRT
Sbjct: 36 PVTKLGRLVKAGKIKSIEEIYLYSLPIKEYQIVDYFLPRLNDEVMKVVPVQKQTRAGQRT 95
Query: 182 RFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLSVIPVRKGYWGNKLGDTHTVPC 361
RFKA V +GD++GHVGLG+KCAKEVATAIRGAI KLS++P+R+GYWG LGD HTVP
Sbjct: 96 RFKAFVVIGDSDGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGYWGTALGDPHTVPV 155
Query: 362 KVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQDVYTSANGQTATLENFAKATYM 541
KV+GKCGSV+VRL+PAPRG G+V APVTK+ L +AGI+D YT + G T TL NF KA +
Sbjct: 156 KVSGKCGSVTVRLVPAPRGAGLVAAPVTKRFLQLAGIEDCYTQSRGSTKTLGNFVKAAFA 215
Query: 542 AIRRTYEYLSPDLWNATPKHTKPI 613
A TY L+P+LW P PI
Sbjct: 216 AASLTYGILTPNLWAERPFGQTPI 239
>sp|P27685|RS2_DICDI 40S ribosomal protein S2 (S4) (LLRep3 protein)
Length = 265
Score = 281 bits (720), Expect = 8e-76
Identities = 140/194 (72%), Positives = 160/194 (82%)
Frame = +2
Query: 2 PCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFLPELKDEVLSIKPVQKQTRAGQRT 181
P TKLGRLV G V+ + EIY++S+PIKE +IID FL LKDEV+ I PVQKQTRAGQRT
Sbjct: 51 PVTKLGRLVALGLVENIHEIYLFSLPIKEYQIIDKFL-NLKDEVMKIVPVQKQTRAGQRT 109
Query: 182 RFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLSVIPVRKGYWGNKLGDTHTVPC 361
RFKA V +GD+NGHVGLGVKCAKEVATAI GAI AKLSVIPVR+GYWGNKLG HTVP
Sbjct: 110 RFKAFVVVGDHNGHVGLGVKCAKEVATAISGAIVAAKLSVIPVRRGYWGNKLGAPHTVPT 169
Query: 362 KVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQDVYTSANGQTATLENFAKATYM 541
KVTGKCGSV+VRL+PAPRGTGIV A V KKLL AG+ DVYTS+ G+T T+ NF AT+
Sbjct: 170 KVTGKCGSVAVRLVPAPRGTGIVAARVPKKLLQYAGVDDVYTSSRGKTRTMGNFVMATFF 229
Query: 542 AIRRTYEYLSPDLW 583
AI +T+ YL+PDLW
Sbjct: 230 AITKTFAYLTPDLW 243
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,969,897
Number of Sequences: 369166
Number of extensions: 1536719
Number of successful extensions: 4306
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4149
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5733423530
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)