Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_D24
(151 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P28797|GRN_CAVPO Granulins precursor (Proepithelin) (PEP... 33 0.27
sp|P28798|GRN_MOUSE Granulins precursor (Acrogranin) (Proep... 31 1.0
sp|P28799|GRN_HUMAN Granulins precursor (Proepithelin) (PEP... 31 1.0
sp|P23785|GRN_RAT Granulins precursor [Contains: Acrogranin... 30 1.3
sp|P81015|GRN3_CYPCA Granulin-3 30 1.8
>sp|P28797|GRN_CAVPO Granulins precursor (Proepithelin) (PEPI) [Contains: Acrogranin;
Granulin-1; Granulin-2; Granulin-3; Granulin-4;
Granulin-5; Granulin-6; Granulin-7]
Length = 591
Score = 32.7 bits (73), Expect = 0.27
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 3 VCCPDLRTCCAPGYHCVTGG 62
VCC D R CC G+HC + G
Sbjct: 547 VCCKDQRHCCPAGFHCESQG 566
>sp|P28798|GRN_MOUSE Granulins precursor (Acrogranin) (Proepithelin) (PEPI) (PC
cell-derived growth factor) (PCDGF) [Contains: Granulin
1; Granulin 2; Granulin 3; Granulin 4; Granulin 5;
Granulin 6; Granulin 7]
Length = 589
Score = 30.8 bits (68), Expect = 1.0
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +3
Query: 3 VCCPDLRTCCAPGYHCVTGG 62
VCC D R CC G+HC G
Sbjct: 546 VCCRDGRHCCPGGFHCSARG 565
Score = 27.7 bits (60), Expect = 8.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +3
Query: 3 VCCPDLRTCCAPGYHCVTGG 62
VCC D + CC G+ C+ G
Sbjct: 393 VCCSDNQHCCPQGFTCLAQG 412
Score = 27.7 bits (60), Expect = 8.7
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 3 VCCPDLRTCCAPGYHC 50
VCC D + CC GY C
Sbjct: 471 VCCEDRQHCCPAGYTC 486
>sp|P28799|GRN_HUMAN Granulins precursor (Proepithelin) (PEPI) [Contains: Acrogranin;
Paragranulin; Granulin-1 (Granulin G); Granulin-2
(Granulin F); Granulin-3 (Granulin B); Granulin-4
(Granulin A); Granulin-5 (Granulin C); Granulin-6
(Granulin D); Granulin-7 (Granulin E)]
Length = 593
Score = 30.8 bits (68), Expect = 1.0
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +3
Query: 3 VCCPDLRTCCAPGYHCVTGGCA*LGS 80
VCC D + CC GY CV G GS
Sbjct: 395 VCCSDHQHCCPQGYTCVAEGQCQRGS 420
Score = 30.0 bits (66), Expect = 1.8
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +3
Query: 3 VCCPDLRTCCAPGYHCVTGG 62
VCC D R CC G+ C G
Sbjct: 550 VCCADRRHCCPAGFRCAARG 569
Score = 27.7 bits (60), Expect = 8.7
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 3 VCCPDLRTCCAPGYHC 50
VCC D + CC GY C
Sbjct: 473 VCCEDRQHCCPAGYTC 488
>sp|P23785|GRN_RAT Granulins precursor [Contains: Acrogranin; Granulin-1 (Granulin G);
Granulin-2 (Granulin F); Granulin-3 (Granulin B)
(Epithelin-2); Granulin-4 (Granulin A) (Epithelin-1);
Granulin-5 (Granulin C); Granulin-6 (Granulin D);
Granulin-7 (Granulin E)]
Length = 588
Score = 30.4 bits (67), Expect = 1.3
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +3
Query: 3 VCCPDLRTCCAPGYHCVTGG 62
VCC D R CC G+HC G
Sbjct: 545 VCCRDGRHCCPIGFHCSAKG 564
Score = 27.7 bits (60), Expect = 8.7
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 3 VCCPDLRTCCAPGYHC 50
VCC D + CC GY C
Sbjct: 470 VCCEDRQHCCPAGYTC 485
>sp|P81015|GRN3_CYPCA Granulin-3
Length = 57
Score = 30.0 bits (66), Expect = 1.8
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +3
Query: 6 CCPDLRTCCAPGYHC 50
CC D R CC GYHC
Sbjct: 34 CCRDGRHCCRHGYHC 48
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,812,189
Number of Sequences: 369166
Number of extensions: 219960
Number of successful extensions: 652
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 68,354,980
effective HSP length: 22
effective length of database: 64,290,810
effective search space used: 1735851870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)