Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_D22
(428 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9R060|NUBP1_MOUSE Nucleotide-binding protein 1 (NBP 1) 105 5e-23
sp|P52920|NBP35_YEAST NBP35 protein 96 4e-20
sp|Q9Y5Y2|NUBP2_HUMAN Nucleotide binding protein 2 (NBP 2) 95 7e-20
sp|P53384|NUBP1_HUMAN Nucleotide-binding protein 1 (NBP 1) 95 7e-20
sp|P40558|YIA3_YEAST Hypothetical 31.9 kDa protein in BET1-... 93 3e-19
sp|Q9R061|NUBP2_MOUSE Nucleotide binding protein 2 (NBP 2) 88 9e-18
sp|Q57731|Y283_METJA Hypothetical ATP-binding protein MJ0283 86 2e-17
sp|Q93459|MRPL_CAEEL Mrp-family putative nucleotide-binding... 85 6e-17
sp|Q9V0D9|Y851_PYRAB Hypothetical ATP-binding protein PYRAB... 81 1e-15
sp|Q8U1R0|Y1145_PYRFU Hypothetical ATP-binding protein PF1145 80 1e-15
>sp|Q9R060|NUBP1_MOUSE Nucleotide-binding protein 1 (NBP 1)
Length = 320
Score = 105 bits (261), Expect = 5e-23
Identities = 52/130 (40%), Positives = 81/130 (62%), Gaps = 2/130 (1%)
Frame = +1
Query: 1 SDEKITLATVIKQQHLSRFSGAILVSTPQMVALSDVRKEISFYQKINLPILGLIENMSGL 180
SDE +++ + H+ GA++++TPQ VAL DVRKEISF K+ LPI+G++ENMSG
Sbjct: 177 SDEHLSVVQYLAAAHID---GAVILTTPQEVALQDVRKEISFCHKVKLPIIGVVENMSGF 233
Query: 181 CCPRCGNIDRVF--STGGGEALAAARQIPFLGCLPMLPDIAAFADTDHGFLVKSGCCPSN 354
CP+C ++F +TGG EA+ +IP LG +P+ P I D F V++ P+
Sbjct: 234 ICPKCKKESQIFPPTTGGAEAMCQDLRIPLLGKVPLDPHIGKSCDKGQSFFVEAPDSPAT 293
Query: 355 SAFSDLLAKI 384
+A+ ++ +I
Sbjct: 294 AAYRSIIQRI 303
>sp|P52920|NBP35_YEAST NBP35 protein
Length = 328
Score = 95.5 bits (236), Expect = 4e-20
Identities = 56/133 (42%), Positives = 78/133 (58%), Gaps = 2/133 (1%)
Frame = +1
Query: 1 SDEKITLATVIKQQHLSRFSGAILVSTPQMVALSDVRKEISFYQKINLPILGLIENMSGL 180
SDE I++ +++ S GA++V+TPQ VAL DVRKEI F +K + ILGL+ENMSG
Sbjct: 195 SDEHISINKYMRE---SGIDGALVVTTPQEVALLDVRKEIDFCKKAGINILGLVENMSGF 251
Query: 181 CCPRCGNIDRVF--STGGGEALAAARQIPFLGCLPMLPDIAAFADTDHGFLVKSGCCPSN 354
CP C ++F +TGGGEAL I FLG +P+ P I D FL P++
Sbjct: 252 VCPNCKGESQIFKATTGGGEALCKELGIKFLGSVPLDPRIGKSCDMGESFLDNYPDSPAS 311
Query: 355 SAFSDLLAKIEFA 393
SA +++ + A
Sbjct: 312 SAVLNVVEALRDA 324
>sp|Q9Y5Y2|NUBP2_HUMAN Nucleotide binding protein 2 (NBP 2)
Length = 271
Score = 94.7 bits (234), Expect = 7e-20
Identities = 44/108 (40%), Positives = 68/108 (62%)
Frame = +1
Query: 61 GAILVSTPQMVALSDVRKEISFYQKINLPILGLIENMSGLCCPRCGNIDRVFSTGGGEAL 240
GA++V+TPQ V++ DVR+E++F +K L ++G++ENMSG CP C VFS GGGE L
Sbjct: 155 GALVVTTPQAVSVGDVRRELTFCRKTGLRVMGIVENMSGFTCPHCTECTSVFSRGGGEEL 214
Query: 241 AAARQIPFLGCLPMLPDIAAFADTDHGFLVKSGCCPSNSAFSDLLAKI 384
A +PFLG +P+ P + + H F+ + P+ +A + + KI
Sbjct: 215 AQLAGVPFLGSVPLDPALMRTLEEGHDFIQEFPGSPAFAALTSIAQKI 262
>sp|P53384|NUBP1_HUMAN Nucleotide-binding protein 1 (NBP 1)
Length = 320
Score = 94.7 bits (234), Expect = 7e-20
Identities = 45/131 (34%), Positives = 79/131 (60%), Gaps = 2/131 (1%)
Frame = +1
Query: 1 SDEKITLATVIKQQHLSRFSGAILVSTPQMVALSDVRKEISFYQKINLPILGLIENMSGL 180
SDE +++ + H+ GA++++TPQ ++L DVRKEI+F +K+ LPI+G++ENMS
Sbjct: 177 SDEHLSVVRYLATAHID---GAVIITTPQELSLQDVRKEINFCRKVKLPIIGVVENMSPF 233
Query: 181 CCPRCGNIDRVF--STGGGEALAAARQIPFLGCLPMLPDIAAFADTDHGFLVKSGCCPSN 354
CP+C ++F +TGG E + ++P LG +P+ P I D F + + P+
Sbjct: 234 ICPKCKKESQIFPPTTGGAELMCQDLEVPLLGRVPLDPLIGKNCDKGQSFFIDAPDSPAT 293
Query: 355 SAFSDLLAKIE 387
A+ ++ +I+
Sbjct: 294 LAYRSIIQRIQ 304
>sp|P40558|YIA3_YEAST Hypothetical 31.9 kDa protein in BET1-PAN1 intergenic region
Length = 293
Score = 92.8 bits (229), Expect = 3e-19
Identities = 45/96 (46%), Positives = 67/96 (69%)
Frame = +1
Query: 1 SDEKITLATVIKQQHLSRFSGAILVSTPQMVALSDVRKEISFYQKINLPILGLIENMSGL 180
SDE I++A ++ S+ G I+V+TPQ VA +DV+KEI+F +K++L ILG+IENMSG
Sbjct: 143 SDEHISIAEELRY---SKPDGGIVVTTPQSVATADVKKEINFCKKVDLKILGIIENMSGF 199
Query: 181 CCPRCGNIDRVFSTGGGEALAAARQIPFLGCLPMLP 288
CP C +FS+GGG+ L+ +P+LG +P+ P
Sbjct: 200 VCPHCAECTNIFSSGGGKRLSEQFSVPYLGNVPIDP 235
>sp|Q9R061|NUBP2_MOUSE Nucleotide binding protein 2 (NBP 2)
Length = 275
Score = 87.8 bits (216), Expect = 9e-18
Identities = 42/104 (40%), Positives = 65/104 (62%)
Frame = +1
Query: 61 GAILVSTPQMVALSDVRKEISFYQKINLPILGLIENMSGLCCPRCGNIDRVFSTGGGEAL 240
GA++V+TPQ V++ DVR+E++F +K L ++G+IENMSG CP C VFS+G GE L
Sbjct: 159 GALVVTTPQAVSIGDVRRELTFCKKTGLQVIGVIENMSGFTCPHCAECTNVFSSGSGEEL 218
Query: 241 AAARQIPFLGCLPMLPDIAAFADTDHGFLVKSGCCPSNSAFSDL 372
A +PFLG +P+ + + F+ + P ++A+S L
Sbjct: 219 ARLAGVPFLGSVPLDSQLTRSLEEGRDFIQE---FPKSTAYSAL 259
>sp|Q57731|Y283_METJA Hypothetical ATP-binding protein MJ0283
Length = 290
Score = 86.3 bits (212), Expect = 2e-17
Identities = 46/127 (36%), Positives = 73/127 (57%)
Frame = +1
Query: 4 DEKITLATVIKQQHLSRFSGAILVSTPQMVALSDVRKEISFYQKINLPILGLIENMSGLC 183
DE++T+ Q + GAI+V+TP+ V++ DV+K I + +N+PI+G+IENMSG
Sbjct: 162 DEQLTI-----MQSIPDIDGAIIVTTPEEVSVLDVKKSIMMAKMLNIPIIGIIENMSGFV 216
Query: 184 CPRCGNIDRVFSTGGGEALAAARQIPFLGCLPMLPDIAAFADTDHGFLVKSGCCPSNSAF 363
CP C + +F GGGE A + FLG +P+ DI A +D G + C ++ F
Sbjct: 217 CPYCNKVVDIFGRGGGEKAAKELGVEFLGRIPL--DIKAREASDKGIPMVLLDCKASEEF 274
Query: 364 SDLLAKI 384
++ +I
Sbjct: 275 KKIVKRI 281
>sp|Q93459|MRPL_CAEEL Mrp-family putative nucleotide-binding protein F10G8.6
Length = 313
Score = 85.1 bits (209), Expect = 6e-17
Identities = 50/131 (38%), Positives = 70/131 (53%), Gaps = 2/131 (1%)
Frame = +1
Query: 1 SDEKITLATVIKQQHLSRFSGAILVSTPQMVALSDVRKEISFYQKINLPILGLIENMSGL 180
SDE I+L + Q GA++VSTPQ V+L DVRKE+SF K +PILG++ENM+
Sbjct: 181 SDEHISLVQFLLQA--GPLDGALIVSTPQEVSLLDVRKEVSFCVKTKVPILGVVENMARF 238
Query: 181 CCPRCGNIDRVF--STGGGEALAAARQIPFLGCLPMLPDIAAFADTDHGFLVKSGCCPSN 354
CP C + +F STGG E + + L LP+ P +A D F +
Sbjct: 239 VCPNCAHTTLLFPTSTGGAEQMCKDSNLELLAQLPLEPALAKALDNGEDFFETNPDSTLA 298
Query: 355 SAFSDLLAKIE 387
+F DL K++
Sbjct: 299 KSFLDLAEKVK 309
>sp|Q9V0D9|Y851_PYRAB Hypothetical ATP-binding protein PYRAB08510
Length = 295
Score = 80.9 bits (198), Expect = 1e-15
Identities = 44/112 (39%), Positives = 66/112 (58%), Gaps = 1/112 (0%)
Frame = +1
Query: 52 RFSGAILVSTPQMVALSDVRKEISFYQKINLPILGLIENMSGLCCPRCGNIDRVFSTGGG 231
+ AI+V+TPQ VAL D K ++ +K+ +P + ++ENMS L CP CGN +F GGG
Sbjct: 172 QLDAAIIVTTPQEVALLDTGKAVNMMKKMEVPYIAVVENMSYLICPHCGNKIDIFGEGGG 231
Query: 232 EALAAARQIPFLGCLPMLPDIAAFADTDHGF-LVKSGCCPSNSAFSDLLAKI 384
E LA + FLG +P+ D+ A +D G +V G P+ AF ++ K+
Sbjct: 232 EKLAEKEGVDFLGKIPI--DLKAREASDLGIPIVLYGDTPAAKAFMEIAEKL 281
>sp|Q8U1R0|Y1145_PYRFU Hypothetical ATP-binding protein PF1145
Length = 295
Score = 80.5 bits (197), Expect = 1e-15
Identities = 45/112 (40%), Positives = 66/112 (58%), Gaps = 1/112 (0%)
Frame = +1
Query: 52 RFSGAILVSTPQMVALSDVRKEISFYQKINLPILGLIENMSGLCCPRCGNIDRVFSTGGG 231
+ AI+V+TPQ VAL D K ++ +K+ +P + +IENMS L CP CGN +F GGG
Sbjct: 172 QLDAAIVVTTPQEVALLDTGKAVNMMKKMEVPYIAVIENMSYLICPHCGNKIDIFGEGGG 231
Query: 232 EALAAARQIPFLGCLPMLPDIAAFADTDHGF-LVKSGCCPSNSAFSDLLAKI 384
E LA + FLG +P+ D+ A +D G +V G P+ AF ++ K+
Sbjct: 232 EKLAEKEGVDFLGKVPI--DLKAREASDLGIPIVLYGDTPAAKAFMEIAEKL 281
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,105,885
Number of Sequences: 369166
Number of extensions: 1147546
Number of successful extensions: 3530
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3524
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2095022160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)