Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_D21
(145 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q90835|EF1A_CHICK Elongation factor 1-alpha 1 (EF-1-alph... 54 8e-08
sp|P10126|EF1A1_MOUSE Elongation factor 1-alpha 1 (EF-1-alp... 54 1e-07
sp|P68105|EF1A1_RABIT Elongation factor 1-alpha 1 (EF-1-alp... 54 1e-07
sp|Q5R4R8|EF1A1_PONPY Elongation factor 1-alpha 1 (EF-1-alp... 54 1e-07
sp|P13549|EF1A0_XENLA Elongation factor 1-alpha, somatic fo... 54 1e-07
sp|P28295|EF1A_ABSGL Elongation factor 1-alpha (EF-1-alpha) 53 2e-07
sp|O42820|EF1A_SCHCO Elongation factor 1-alpha (EF-1-alpha) 52 3e-07
sp|P17507|EF1A2_XENLA Elongation factor 1-alpha, oocyte for... 52 5e-07
sp|P16017|EF1A_CANAL Elongation factor 1-alpha (EF-1-alpha) 52 5e-07
sp|P17508|EF1A3_XENLA Elongation factor 1-alpha, oocyte for... 52 5e-07
>sp|Q90835|EF1A_CHICK Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor Tu)
(EF-Tu)
Length = 462
Score = 54.3 bits (129), Expect = 8e-08
Identities = 20/27 (74%), Positives = 24/27 (88%)
Frame = +3
Query: 63 SGWNGDNMIEESTNMPWYKGWDFTRKN 143
SGWNGDNM+E S+NMPW+KGW TRK+
Sbjct: 194 SGWNGDNMLEPSSNMPWFKGWKVTRKD 220
Score = 30.4 bits (67), Expect = 1.3
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +1
Query: 1 VGSYLKKVGYQPDAVAF 51
V +Y+KK+GY PD VAF
Sbjct: 174 VSTYIKKIGYNPDTVAF 190
>sp|P10126|EF1A1_MOUSE Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P62630|EF1A1_RAT Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P62629|EF1A1_CRIGR Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 53.9 bits (128), Expect = 1e-07
Identities = 20/27 (74%), Positives = 23/27 (85%)
Frame = +3
Query: 63 SGWNGDNMIEESTNMPWYKGWDFTRKN 143
SGWNGDNM+E S NMPW+KGW TRK+
Sbjct: 194 SGWNGDNMLEPSANMPWFKGWKVTRKD 220
Score = 30.4 bits (67), Expect = 1.3
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +1
Query: 1 VGSYLKKVGYQPDAVAF 51
V +Y+KK+GY PD VAF
Sbjct: 174 VSTYIKKIGYNPDTVAF 190
>sp|P68105|EF1A1_RABIT Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|Q5R1X2|EF1A1_PANTR Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P68103|EF1A1_BOVIN Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P68104|EF1A1_HUMAN Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|Q66RN5|EF1A1_FELCA Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 53.9 bits (128), Expect = 1e-07
Identities = 20/27 (74%), Positives = 23/27 (85%)
Frame = +3
Query: 63 SGWNGDNMIEESTNMPWYKGWDFTRKN 143
SGWNGDNM+E S NMPW+KGW TRK+
Sbjct: 194 SGWNGDNMLEPSANMPWFKGWKVTRKD 220
Score = 30.4 bits (67), Expect = 1.3
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +1
Query: 1 VGSYLKKVGYQPDAVAF 51
V +Y+KK+GY PD VAF
Sbjct: 174 VSTYIKKIGYNPDTVAF 190
>sp|Q5R4R8|EF1A1_PONPY Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 53.9 bits (128), Expect = 1e-07
Identities = 20/27 (74%), Positives = 23/27 (85%)
Frame = +3
Query: 63 SGWNGDNMIEESTNMPWYKGWDFTRKN 143
SGWNGDNM+E S NMPW+KGW TRK+
Sbjct: 194 SGWNGDNMLEPSANMPWFKGWKVTRKD 220
Score = 30.4 bits (67), Expect = 1.3
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +1
Query: 1 VGSYLKKVGYQPDAVAF 51
V +Y+KK+GY PD VAF
Sbjct: 174 VSTYIKKIGYNPDTVAF 190
>sp|P13549|EF1A0_XENLA Elongation factor 1-alpha, somatic form (EF-1-alpha-S)
Length = 462
Score = 53.5 bits (127), Expect = 1e-07
Identities = 20/26 (76%), Positives = 22/26 (84%)
Frame = +3
Query: 63 SGWNGDNMIEESTNMPWYKGWDFTRK 140
SGWNGDNM+E S NMPW+KGW TRK
Sbjct: 194 SGWNGDNMLEPSPNMPWFKGWKITRK 219
Score = 30.4 bits (67), Expect = 1.3
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +1
Query: 1 VGSYLKKVGYQPDAVAF 51
V +Y+KK+GY PD VAF
Sbjct: 174 VSTYIKKIGYNPDTVAF 190
>sp|P28295|EF1A_ABSGL Elongation factor 1-alpha (EF-1-alpha)
Length = 458
Score = 52.8 bits (125), Expect = 2e-07
Identities = 19/22 (86%), Positives = 22/22 (100%)
Frame = +3
Query: 63 SGWNGDNMIEESTNMPWYKGWD 128
SGW+GDNM+EESTNMPWYKGW+
Sbjct: 192 SGWHGDNMLEESTNMPWYKGWN 213
>sp|O42820|EF1A_SCHCO Elongation factor 1-alpha (EF-1-alpha)
Length = 460
Score = 52.4 bits (124), Expect = 3e-07
Identities = 19/21 (90%), Positives = 21/21 (100%)
Frame = +3
Query: 63 SGWNGDNMIEESTNMPWYKGW 125
SGW+GDNM+EESTNMPWYKGW
Sbjct: 192 SGWHGDNMLEESTNMPWYKGW 212
>sp|P17507|EF1A2_XENLA Elongation factor 1-alpha, oocyte form (EF-1-alpha-O) (EF-1AO) (42S
p48)
Length = 461
Score = 51.6 bits (122), Expect = 5e-07
Identities = 19/26 (73%), Positives = 22/26 (84%)
Frame = +3
Query: 63 SGWNGDNMIEESTNMPWYKGWDFTRK 140
SGW+GDNM+E STNMPW+KGW RK
Sbjct: 194 SGWHGDNMLEASTNMPWFKGWKIERK 219
>sp|P16017|EF1A_CANAL Elongation factor 1-alpha (EF-1-alpha)
Length = 458
Score = 51.6 bits (122), Expect = 5e-07
Identities = 20/27 (74%), Positives = 22/27 (81%)
Frame = +3
Query: 63 SGWNGDNMIEESTNMPWYKGWDFTRKN 143
SGWNGDNMIE STN PWYKGW+ K+
Sbjct: 192 SGWNGDNMIEPSTNCPWYKGWEKETKS 218
>sp|P17508|EF1A3_XENLA Elongation factor 1-alpha, oocyte form (EF-1-alpha-O1) (EF-1AO1)
Length = 461
Score = 51.6 bits (122), Expect = 5e-07
Identities = 19/26 (73%), Positives = 22/26 (84%)
Frame = +3
Query: 63 SGWNGDNMIEESTNMPWYKGWDFTRK 140
SGW+GDNM+E STNMPW+KGW RK
Sbjct: 194 SGWHGDNMLEASTNMPWFKGWKIERK 219
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,150,029
Number of Sequences: 369166
Number of extensions: 267199
Number of successful extensions: 1053
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 68,354,980
effective HSP length: 21
effective length of database: 64,475,545
effective search space used: 1676364170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)