Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_D18
(224 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P74227|EFTU_SYNY3 Elongation factor Tu (EF-Tu) 122 3e-28
sp|Q8YP63|EFTU_ANASP Elongation factor Tu (EF-Tu) 121 6e-28
sp|P13927|EFTU_MYCGE Elongation factor Tu (EF-Tu) 120 1e-27
sp|P22679|EFTU_MYCHO Elongation factor Tu (EF-Tu) 120 1e-27
sp|P42480|EFTU_TAXOC Elongation factor Tu (EF-Tu) 120 1e-27
sp|Q8EX18|EFTU_MYCPE Elongation factor Tu (EF-Tu) 120 1e-27
sp|P51287|EFTU_PORPU Elongation factor Tu (EF-Tu) 119 2e-27
sp|Q8BFR5|EFTU_MOUSE Elongation factor Tu, mitochondrial pr... 119 2e-27
sp|P13552|EFTU_SPIPL Elongation factor Tu (EF-Tu) 119 2e-27
sp|P23568|EFTU_MYCPN Elongation factor Tu (EF-Tu) 119 2e-27
>sp|P74227|EFTU_SYNY3 Elongation factor Tu (EF-Tu)
Length = 399
Score = 122 bits (306), Expect = 3e-28
Identities = 55/74 (74%), Positives = 64/74 (86%)
Frame = +1
Query: 1 KRRGITINAAVVDYSTDARHYAHTDCPGHADYIKNMITGANQMEAAILVVAATDGSMPQT 180
K RGITIN A V+Y TD+RHYAH DCPGHADY+KNMITGA QM+ AILVV+A DG MPQT
Sbjct: 57 KARGITINTAHVEYETDSRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQT 116
Query: 181 REHLVLAKQIGIDK 222
REH++LAKQ+G+ K
Sbjct: 117 REHILLAKQVGVPK 130
>sp|Q8YP63|EFTU_ANASP Elongation factor Tu (EF-Tu)
Length = 409
Score = 121 bits (303), Expect = 6e-28
Identities = 56/74 (75%), Positives = 63/74 (85%)
Frame = +1
Query: 1 KRRGITINAAVVDYSTDARHYAHTDCPGHADYIKNMITGANQMEAAILVVAATDGSMPQT 180
K RGITIN A V+Y T RHYAH DCPGHADY+KNMITGA QM+ AILVVAATDG MPQT
Sbjct: 57 KARGITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQT 116
Query: 181 REHLVLAKQIGIDK 222
REH++LAKQ+G+ K
Sbjct: 117 REHILLAKQVGVPK 130
>sp|P13927|EFTU_MYCGE Elongation factor Tu (EF-Tu)
Length = 394
Score = 120 bits (301), Expect = 1e-27
Identities = 55/74 (74%), Positives = 65/74 (87%)
Frame = +1
Query: 1 KRRGITINAAVVDYSTDARHYAHTDCPGHADYIKNMITGANQMEAAILVVAATDGSMPQT 180
K RGITIN+A V+YS+D RHYAH DCPGHADYIKNMITGA QM+ AILVV+ATD MPQT
Sbjct: 57 KARGITINSAHVEYSSDKRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDSVMPQT 116
Query: 181 REHLVLAKQIGIDK 222
REH++LA+Q+G+ K
Sbjct: 117 REHILLARQVGVPK 130
>sp|P22679|EFTU_MYCHO Elongation factor Tu (EF-Tu)
Length = 397
Score = 120 bits (301), Expect = 1e-27
Identities = 53/74 (71%), Positives = 64/74 (86%)
Frame = +1
Query: 1 KRRGITINAAVVDYSTDARHYAHTDCPGHADYIKNMITGANQMEAAILVVAATDGSMPQT 180
K RGITIN + ++Y T+ RHYAH DCPGHADY+KNMITGA QM+ AILVVAATDG MPQT
Sbjct: 57 KARGITINTSHIEYQTEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQT 116
Query: 181 REHLVLAKQIGIDK 222
REH++LA+Q+G+ K
Sbjct: 117 REHILLARQVGVPK 130
>sp|P42480|EFTU_TAXOC Elongation factor Tu (EF-Tu)
Length = 395
Score = 120 bits (300), Expect = 1e-27
Identities = 54/72 (75%), Positives = 63/72 (87%)
Frame = +1
Query: 1 KRRGITINAAVVDYSTDARHYAHTDCPGHADYIKNMITGANQMEAAILVVAATDGSMPQT 180
K RGITIN A V+YST RHYAH DCPGHADY+KNM+TGA QM+ AILVVAATDG MPQT
Sbjct: 57 KERGITINTAHVEYSTANRHYAHVDCPGHADYVKNMVTGAAQMDGAILVVAATDGPMPQT 116
Query: 181 REHLVLAKQIGI 216
REH++LA+Q+G+
Sbjct: 117 REHILLARQVGV 128
>sp|Q8EX18|EFTU_MYCPE Elongation factor Tu (EF-Tu)
Length = 394
Score = 120 bits (300), Expect = 1e-27
Identities = 54/74 (72%), Positives = 64/74 (86%)
Frame = +1
Query: 1 KRRGITINAAVVDYSTDARHYAHTDCPGHADYIKNMITGANQMEAAILVVAATDGSMPQT 180
K RGITIN A V+Y T+ RHYAH DCPGHADY+KNMITGA QM+ AILVVAA+DG MPQT
Sbjct: 57 KARGITINTAHVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAASDGPMPQT 116
Query: 181 REHLVLAKQIGIDK 222
REH++LA+Q+G+ K
Sbjct: 117 REHILLARQVGVPK 130
>sp|P51287|EFTU_PORPU Elongation factor Tu (EF-Tu)
Length = 409
Score = 119 bits (299), Expect = 2e-27
Identities = 54/72 (75%), Positives = 62/72 (86%)
Frame = +1
Query: 1 KRRGITINAAVVDYSTDARHYAHTDCPGHADYIKNMITGANQMEAAILVVAATDGSMPQT 180
K RGITIN A V+Y TD RHYAH DCPGHADY+KNMITGA QM+ AILVV+A DG MPQT
Sbjct: 57 KARGITINTAHVEYETDNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQT 116
Query: 181 REHLVLAKQIGI 216
REH++LAKQ+G+
Sbjct: 117 REHILLAKQVGV 128
>sp|Q8BFR5|EFTU_MOUSE Elongation factor Tu, mitochondrial precursor
Length = 452
Score = 119 bits (298), Expect = 2e-27
Identities = 55/73 (75%), Positives = 63/73 (86%)
Frame = +1
Query: 1 KRRGITINAAVVDYSTDARHYAHTDCPGHADYIKNMITGANQMEAAILVVAATDGSMPQT 180
+ RGITINAA V+YST ARHYAHTDCPGHADY+KNMITG ++ ILVVAA DG MPQT
Sbjct: 102 RARGITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQT 161
Query: 181 REHLVLAKQIGID 219
REHL+LAKQIG++
Sbjct: 162 REHLLLAKQIGVE 174
>sp|P13552|EFTU_SPIPL Elongation factor Tu (EF-Tu)
Length = 410
Score = 119 bits (298), Expect = 2e-27
Identities = 53/72 (73%), Positives = 63/72 (87%)
Frame = +1
Query: 1 KRRGITINAAVVDYSTDARHYAHTDCPGHADYIKNMITGANQMEAAILVVAATDGSMPQT 180
K+RGITIN A V+Y T+ RHYAH DCPGHADY+KNMITGA QM+ AILVV+A DG MPQT
Sbjct: 57 KQRGITINTAHVEYETEQRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQT 116
Query: 181 REHLVLAKQIGI 216
REH++LAKQ+G+
Sbjct: 117 REHILLAKQVGV 128
>sp|P23568|EFTU_MYCPN Elongation factor Tu (EF-Tu)
Length = 394
Score = 119 bits (298), Expect = 2e-27
Identities = 54/74 (72%), Positives = 65/74 (87%)
Frame = +1
Query: 1 KRRGITINAAVVDYSTDARHYAHTDCPGHADYIKNMITGANQMEAAILVVAATDGSMPQT 180
K RGITIN+A V+YS+D RHYAH DCPGHADYIKNMITGA QM+ AILVV+ATD MPQT
Sbjct: 57 KARGITINSAHVEYSSDKRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDSVMPQT 116
Query: 181 REHLVLAKQIGIDK 222
REH++LA+Q+G+ +
Sbjct: 117 REHILLARQVGVPR 130
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,980,789
Number of Sequences: 369166
Number of extensions: 343966
Number of successful extensions: 2059
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1952
length of database: 68,354,980
effective HSP length: 46
effective length of database: 59,857,170
effective search space used: 1676000760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)