Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_D12
(239 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8WY91|THAP4_HUMAN THAP domain-containing protein 4 35 0.070
sp|Q09244|YP95_CAEEL Hypothetical protein C28H8.5 precursor 32 0.46
sp|Q9V0T9|GATD_PYRAB Glutamyl-tRNA(Gln) amidotransferase su... 28 6.6
sp|O59132|GATD_PYRHO Glutamyl-tRNA(Gln) amidotransferase su... 28 6.6
>sp|Q8WY91|THAP4_HUMAN THAP domain-containing protein 4
Length = 577
Score = 34.7 bits (78), Expect = 0.070
Identities = 18/34 (52%), Positives = 22/34 (64%)
Frame = +3
Query: 21 LGRISFAKEPFVTKIKRVFTLVDENKLTQQMWMS 122
+ RISFAKEP V +I R F L E KL Q + M+
Sbjct: 525 IARISFAKEPHVEQITRKFRLNSEGKLEQTVSMA 558
>sp|Q09244|YP95_CAEEL Hypothetical protein C28H8.5 precursor
Length = 302
Score = 32.0 bits (71), Expect = 0.46
Identities = 15/37 (40%), Positives = 26/37 (70%)
Frame = +3
Query: 12 IQDLGRISFAKEPFVTKIKRVFTLVDENKLTQQMWMS 122
+Q +GRISF+ + V + R +TL+DEN+L ++ M+
Sbjct: 246 LQRIGRISFSHDSAVRIMFREWTLLDENRLEARLLMT 282
>sp|Q9V0T9|GATD_PYRAB Glutamyl-tRNA(Gln) amidotransferase subunit D (Glu-ADT subunit D)
Length = 438
Score = 28.1 bits (61), Expect = 6.6
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -2
Query: 97 LFSSTNVKTRLIFVTKGSFANEIRPKSWIKM 5
+F NVK +L+F F+ +++PK W+K+
Sbjct: 130 IFEVANVKPKLLF---NIFSEDMKPKHWVKI 157
>sp|O59132|GATD_PYRHO Glutamyl-tRNA(Gln) amidotransferase subunit D (Glu-ADT subunit D)
Length = 438
Score = 28.1 bits (61), Expect = 6.6
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -2
Query: 97 LFSSTNVKTRLIFVTKGSFANEIRPKSWIKM 5
+F N+K +L+F F+ +++PK WIK+
Sbjct: 130 IFEIANIKPKLLF---NIFSEDMKPKHWIKI 157
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,448,402
Number of Sequences: 369166
Number of extensions: 282606
Number of successful extensions: 444
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 68,354,980
effective HSP length: 50
effective length of database: 59,118,230
effective search space used: 1714428670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)