Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_D10
(427 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O14530|TXND9_HUMAN Thioredoxin domain containing protein... 49 3e-06
sp|Q9CQ79|TXND9_MOUSE Thioredoxin domain containing protein... 49 3e-06
sp|Q8K581|TXND9_RAT Thioredoxin domain containing protein 9... 49 3e-06
sp|O18883|TXND9_BOVIN Thioredoxin domain containing protein... 45 6e-05
sp|O64628|14P_ARATH UPF0071 protein At2g18990 39 0.005
sp|Q11183|YPD3_CAEEL Hypothetical UPF0071 protein C05D11.3 ... 30 2.8
>sp|O14530|TXND9_HUMAN Thioredoxin domain containing protein 9 (Protein 1-4) (ATP binding
protein associated with cell differentiation)
Length = 226
Score = 49.3 bits (116), Expect = 3e-06
Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 4/55 (7%)
Frame = +2
Query: 2 LGGHDEFSTKMMEWRIAQADVINYSGDLLTPPDIKPKSGILGVN----KKKAIRG 154
LG D+F+T+ +EWR+ +D++NYSG+L+ PP K G N +KK IRG
Sbjct: 164 LGNTDDFTTETLEWRLGSSDILNYSGNLMEPPFQNQKK--FGTNFTKLEKKTIRG 216
>sp|Q9CQ79|TXND9_MOUSE Thioredoxin domain containing protein 9 (ATP binding protein
associated with cell differentiation)
Length = 226
Score = 49.3 bits (116), Expect = 3e-06
Identities = 26/55 (47%), Positives = 35/55 (63%), Gaps = 4/55 (7%)
Frame = +2
Query: 2 LGGHDEFSTKMMEWRIAQADVINYSGDLLTPPDIKPKSGILGVN----KKKAIRG 154
LG D+F+T+ +EWR+ +DVINYSG+L+ PP K G N +KK IRG
Sbjct: 164 LGNTDDFTTETLEWRLGCSDVINYSGNLMEPPFQSQKK--FGTNFTKLEKKTIRG 216
>sp|Q8K581|TXND9_RAT Thioredoxin domain containing protein 9 (ES cell-related protein)
Length = 226
Score = 49.3 bits (116), Expect = 3e-06
Identities = 26/55 (47%), Positives = 35/55 (63%), Gaps = 4/55 (7%)
Frame = +2
Query: 2 LGGHDEFSTKMMEWRIAQADVINYSGDLLTPPDIKPKSGILGVN----KKKAIRG 154
LG D+F+T+ +EWR+ +DVINYSG+L+ PP K G N +KK IRG
Sbjct: 164 LGNTDDFTTETLEWRLGCSDVINYSGNLMEPPFQSQKK--FGTNFTKLEKKTIRG 216
>sp|O18883|TXND9_BOVIN Thioredoxin domain containing protein 9 (Protein 1-4)
Length = 179
Score = 45.1 bits (105), Expect = 6e-05
Identities = 16/32 (50%), Positives = 26/32 (81%)
Frame = +2
Query: 2 LGGHDEFSTKMMEWRIAQADVINYSGDLLTPP 97
LG D+F+T+ +EWR+ +D++NYSG+L+ PP
Sbjct: 94 LGNTDDFTTETLEWRLGCSDILNYSGNLMEPP 125
>sp|O64628|14P_ARATH UPF0071 protein At2g18990
Length = 211
Score = 38.9 bits (89), Expect = 0.005
Identities = 20/38 (52%), Positives = 27/38 (71%)
Frame = +2
Query: 2 LGGHDEFSTKMMEWRIAQADVINYSGDLLTPPDIKPKS 115
LGG D+FST+ +E RIA+A VI+Y G+ +KPKS
Sbjct: 158 LGGKDDFSTEDLEERIARAQVIHYDGE---SSSLKPKS 192
>sp|Q11183|YPD3_CAEEL Hypothetical UPF0071 protein C05D11.3 in chromosome III
Length = 208
Score = 29.6 bits (65), Expect = 2.8
Identities = 12/22 (54%), Positives = 19/22 (86%)
Frame = +2
Query: 2 LGGHDEFSTKMMEWRIAQADVI 67
LGG DEF+T+ ME R+A+++V+
Sbjct: 159 LGGKDEFTTETMENRLARSEVL 180
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,552,759
Number of Sequences: 369166
Number of extensions: 609911
Number of successful extensions: 1169
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1169
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 2102781030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)