Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_C24
(784 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8HXX1|MUTA_MACFA Methylmalonyl-CoA mutase, mitochondria... 354 2e-97
sp|P22033|MUTA_HUMAN Methylmalonyl-CoA mutase, mitochondria... 354 2e-97
sp|Q23381|MUTA_CAEEL Probable methylmalonyl-CoA mutase, mit... 347 2e-95
sp|Q8MI68|MUTA_PIG Methylmalonyl-CoA mutase, mitochondrial ... 338 1e-92
sp|P16332|MUTA_MOUSE Methylmalonyl-CoA mutase, mitochondria... 324 1e-88
sp|Q59677|MUTB_PORGI Methylmalonyl-CoA mutase large subunit... 296 6e-80
sp|Q05065|MUTB_STRCM Methylmalonyl-CoA mutase large subunit... 290 3e-78
sp|P65487|MUTB_MYCTU Probable methylmalonyl-CoA mutase larg... 274 2e-73
sp|P11653|MUTB_PROFR Methylmalonyl-CoA mutase large subunit... 271 2e-72
sp|O86028|MUTB_RHIME Methylmalonyl-CoA mutase (MCM) 269 7e-72
>sp|Q8HXX1|MUTA_MACFA Methylmalonyl-CoA mutase, mitochondrial precursor (MCM)
(Methylmalonyl-CoA isomerase)
Length = 750
Score = 354 bits (908), Expect = 2e-97
Identities = 172/261 (65%), Positives = 208/261 (79%)
Frame = +2
Query: 2 IYSEAIKVIEEIEAMGGMAKAVSEGIPKLKIEECAAKRQAHIDSGQEVIVGVNKYRLENP 181
+Y A+K+I EIE MGGMAKAV+EGIPKL+IEECAA+RQA IDSG EVIVGVNKY+LE
Sbjct: 438 VYDAALKLINEIEEMGGMAKAVAEGIPKLRIEECAARRQARIDSGSEVIVGVNKYQLEKE 497
Query: 182 EKVDVLHIDNTKVRESQIAKINALKQSRDNNKAQNILKKLEECCRSGHGNLLEIAVDASR 361
+ V+VL IDNT VR QI K+ +K SRD A+ L L EC SG GN+L +AVDASR
Sbjct: 498 DAVEVLAIDNTSVRNRQIEKLQKIKSSRDQALAERCLAALTECAASGDGNILALAVDASR 557
Query: 362 ARCTVGEITDAMVAAYGRHVAVGRLVSGAYKSEFGDNKEIAAVLKKVEDFLKNEGRRPRI 541
ARCTVGEITDA+ +G H A R+VSGAY+ EFG++KEI + +K+V F++ EGRRPR+
Sbjct: 558 ARCTVGEITDALKKVFGEHKANDRMVSGAYRQEFGESKEITSAIKRVHKFMEREGRRPRL 617
Query: 542 LIAKLGQDGHDRGGKVIATGFSDLGFDVDVGPLFSTPKEAVEQAVDADVHVIGVSSLAAG 721
L+AK+GQDGHDRG KVIATGF+DLGFDVD+GPLF TP+E +QAVDADVH +GVS+LAAG
Sbjct: 618 LVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQTpreVAQQAVDADVHAVGVSTLAAG 677
Query: 722 HMTLVPQLIDELKKAGRSDIV 784
H TLVP+LI EL GR DI+
Sbjct: 678 HKTLVPELIKELNSLGRPDIL 698
>sp|P22033|MUTA_HUMAN Methylmalonyl-CoA mutase, mitochondrial precursor (MCM)
(Methylmalonyl-CoA isomerase)
Length = 750
Score = 354 bits (908), Expect = 2e-97
Identities = 172/261 (65%), Positives = 208/261 (79%)
Frame = +2
Query: 2 IYSEAIKVIEEIEAMGGMAKAVSEGIPKLKIEECAAKRQAHIDSGQEVIVGVNKYRLENP 181
+Y A+K+I EIE MGGMAKAV+EGIPKL+IEECAA+RQA IDSG EVIVGVNKY+LE
Sbjct: 438 VYDAALKLINEIEEMGGMAKAVAEGIPKLRIEECAARRQARIDSGSEVIVGVNKYQLEKE 497
Query: 182 EKVDVLHIDNTKVRESQIAKINALKQSRDNNKAQNILKKLEECCRSGHGNLLEIAVDASR 361
+ V+VL IDNT VR QI K+ +K SRD A+ L L EC SG GN+L +AVDASR
Sbjct: 498 DAVEVLAIDNTSVRNRQIEKLKKIKSSRDQALAERCLAALTECAASGDGNILALAVDASR 557
Query: 362 ARCTVGEITDAMVAAYGRHVAVGRLVSGAYKSEFGDNKEIAAVLKKVEDFLKNEGRRPRI 541
ARCTVGEITDA+ +G H A R+VSGAY+ EFG++KEI + +K+V F++ EGRRPR+
Sbjct: 558 ARCTVGEITDALKKVFGEHKANDRMVSGAYRQEFGESKEITSAIKRVHKFMEREGRRPRL 617
Query: 542 LIAKLGQDGHDRGGKVIATGFSDLGFDVDVGPLFSTPKEAVEQAVDADVHVIGVSSLAAG 721
L+AK+GQDGHDRG KVIATGF+DLGFDVD+GPLF TP+E +QAVDADVH +GVS+LAAG
Sbjct: 618 LVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQTpreVAQQAVDADVHAVGVSTLAAG 677
Query: 722 HMTLVPQLIDELKKAGRSDIV 784
H TLVP+LI EL GR DI+
Sbjct: 678 HKTLVPELIKELNSLGRPDIL 698
>sp|Q23381|MUTA_CAEEL Probable methylmalonyl-CoA mutase, mitochondrial precursor (MCM)
Length = 744
Score = 347 bits (890), Expect = 2e-95
Identities = 171/261 (65%), Positives = 216/261 (82%)
Frame = +2
Query: 2 IYSEAIKVIEEIEAMGGMAKAVSEGIPKLKIEECAAKRQAHIDSGQEVIVGVNKYRLENP 181
IY +A+ VI+EI+ +GGMAKAV+ G+ KLKIEE AAK+QA ID+G++VIVGVNKYRL++
Sbjct: 430 IYEKALAVIKEIDELGGMAKAVASGMTKLKIEEAAAKKQARIDAGKDVIVGVNKYRLDHE 489
Query: 182 EKVDVLHIDNTKVRESQIAKINALKQSRDNNKAQNILKKLEECCRSGHGNLLEIAVDASR 361
++V+VL IDN KVRE Q AK+N ++ +RD KAQ L + E R G+GNL+E+A++A+R
Sbjct: 490 QQVEVLKIDNAKVREEQCAKLNHIRATRDAEKAQKALDAITEGAR-GNGNLMELAIEAAR 548
Query: 362 ARCTVGEITDAMVAAYGRHVAVGRLVSGAYKSEFGDNKEIAAVLKKVEDFLKNEGRRPRI 541
ARCTVGEI+DAM + RH AV RLVSGAYKSEFG+ E++ VL++V+ F +GR+PRI
Sbjct: 549 ARCTVGEISDAMEKVFNRHAAVNRLVSGAYKSEFGETSEMSQVLERVKSFADRDGRQPRI 608
Query: 542 LIAKLGQDGHDRGGKVIATGFSDLGFDVDVGPLFSTPKEAVEQAVDADVHVIGVSSLAAG 721
++AK+GQDGHDRG KVIATGF+DLGFDVDVGPLF TP EA +QAVDADVHVIG SSLAAG
Sbjct: 609 MVAKMGQDGHDRGAKVIATGFADLGFDVDVGPLFQTPLEAAQQAVDADVHVIGASSLAAG 668
Query: 722 HMTLVPQLIDELKKAGRSDIV 784
H+TL+PQLI ELKK GR DI+
Sbjct: 669 HLTLIPQLIGELKKLGRPDIL 689
>sp|Q8MI68|MUTA_PIG Methylmalonyl-CoA mutase, mitochondrial precursor (MCM)
(Methylmalonyl-CoA isomerase)
Length = 750
Score = 338 bits (867), Expect = 1e-92
Identities = 166/261 (63%), Positives = 203/261 (77%)
Frame = +2
Query: 2 IYSEAIKVIEEIEAMGGMAKAVSEGIPKLKIEECAAKRQAHIDSGQEVIVGVNKYRLENP 181
+Y A+K+I EIE MGGMAKAV+EGIPKL+IEECAA+RQA IDSG EVIVGVNKY+LE
Sbjct: 438 VYDAALKLINEIEEMGGMAKAVAEGIPKLRIEECAARRQARIDSGSEVIVGVNKYQLEKE 497
Query: 182 EKVDVLHIDNTKVRESQIAKINALKQSRDNNKAQNILKKLEECCRSGHGNLLEIAVDASR 361
E V+VL IDNT VR QI K+ + + + L L C SG GN+L +AV+A+R
Sbjct: 498 ESVEVLAIDNTSVRNKQIEKLKKVNPAGIKLWLERCLTALTACAASGDGNILALAVEATR 557
Query: 362 ARCTVGEITDAMVAAYGRHVAVGRLVSGAYKSEFGDNKEIAAVLKKVEDFLKNEGRRPRI 541
ARCTVGEITDAM +G H A R+VSGAY+ EFG++KEI+ +K+V F++ EGRRPR+
Sbjct: 558 ARCTVGEITDAMKKVFGEHKANDRMVSGAYRQEFGESKEISFAIKRVHKFMEREGRRPRL 617
Query: 542 LIAKLGQDGHDRGGKVIATGFSDLGFDVDVGPLFSTPKEAVEQAVDADVHVIGVSSLAAG 721
L+AK+GQDGHDRG KVIATGF+DLGFDVD+GPLF TP+E +QAVDADVH +GVS+LAAG
Sbjct: 618 LVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQTpreVAQQAVDADVHAVGVSTLAAG 677
Query: 722 HMTLVPQLIDELKKAGRSDIV 784
H TLVP+LI EL GR DI+
Sbjct: 678 HKTLVPELIKELSTLGRPDIL 698
>sp|P16332|MUTA_MOUSE Methylmalonyl-CoA mutase, mitochondrial precursor (MCM)
(Methylmalonyl-CoA isomerase)
Length = 748
Score = 324 bits (831), Expect = 1e-88
Identities = 159/261 (60%), Positives = 198/261 (75%)
Frame = +2
Query: 2 IYSEAIKVIEEIEAMGGMAKAVSEGIPKLKIEECAAKRQAHIDSGQEVIVGVNKYRLENP 181
+Y A+K+I E+E MGGMAKAV+EGIPKL+IEECAA+RQA IDSG EVIVGVNKY LE
Sbjct: 436 VYEAALKLIYEVEEMGGMAKAVAEGIPKLRIEECAARRQARIDSGSEVIVGVNKYHLEKE 495
Query: 182 EKVDVLHIDNTKVRESQIAKINALKQSRDNNKAQNILKKLEECCRSGHGNLLEIAVDASR 361
+ V +L ID +R+ QI K+ +K SRD A+ L L +C SG GN+L +AVDA+R
Sbjct: 496 DSVHLLAIDIISLRKKQIEKLKKIKSSRDQALAEQCLSALTQCAASGDGNILALAVDAAR 555
Query: 362 ARCTVGEITDAMVAAYGRHVAVGRLVSGAYKSEFGDNKEIAAVLKKVEDFLKNEGRRPRI 541
ARCTV EITDA +G H A R+VSGAY+ EFG++KEI + +K+V F++ EGRR +
Sbjct: 556 ARCTVPEITDAFKKVFGEHKANDRMVSGAYRQEFGESKEITSAIKRVNKFMEREGRRLGL 615
Query: 542 LIAKLGQDGHDRGGKVIATGFSDLGFDVDVGPLFSTPKEAVEQAVDADVHVIGVSSLAAG 721
L+AK+G+DGHDRG KVIATGF+DLGFDVD+GPLF TP+E AVDADVH +GVS+ AAG
Sbjct: 616 LVAKMGKDGHDRGAKVIATGFADLGFDVDIGPLFQTpreVAHDAVDADVHAVGVSTHAAG 675
Query: 722 HMTLVPQLIDELKKAGRSDIV 784
H TLVP+LI EL GR DI+
Sbjct: 676 HKTLVPELIKELTALGRPDIL 696
>sp|Q59677|MUTB_PORGI Methylmalonyl-CoA mutase large subunit (MCM-alpha)
Length = 715
Score = 296 bits (757), Expect = 6e-80
Identities = 145/258 (56%), Positives = 192/258 (74%)
Frame = +2
Query: 11 EAIKVIEEIEAMGGMAKAVSEGIPKLKIEECAAKRQAHIDSGQEVIVGVNKYRLENPEKV 190
+A +I+E++ MGGMAKA+ G+PKL+IEE AA+ QA IDS Q+VIVGVNKYRL + +
Sbjct: 414 KAWTLIKEVQEMGGMAKAIETGLPKLRIEEAAARTQARIDSHQQVIVGVNKYRLPKEDPI 473
Query: 191 DVLHIDNTKVRESQIAKINALKQSRDNNKAQNILKKLEECCRSGHGNLLEIAVDASRARC 370
D+L IDNT VR+ QI ++N L+ RD Q L+ + +C + GNLL++AV A+ R
Sbjct: 474 DILEIDNTAVRKQQIERLNDLRSHRDEKAVQEALEAITKCVETKEGNLLDLAVKAAGLRA 533
Query: 371 TVGEITDAMVAAYGRHVAVGRLVSGAYKSEFGDNKEIAAVLKKVEDFLKNEGRRPRILIA 550
++GEI+DA GR+ AV R +SG Y SE G++K+ A + E F K EGR+PRI+IA
Sbjct: 534 SLGEISDACEKVVGRYKAVIRTISGVYSSESGEDKDFAHAKELAEKFAKKEGRQPRIMIA 593
Query: 551 KLGQDGHDRGGKVIATGFSDLGFDVDVGPLFSTPKEAVEQAVDADVHVIGVSSLAAGHMT 730
K+GQDGHDRG KV+ATG++D GFDVD+GPLF TP+EA QAV+ DVHV+GVSSLAAGH T
Sbjct: 594 KMGQDGHDRGAKVVATGYADCGFDVDMGPLFQTPEEAARQAVENDVHVMGVSSLAAGHKT 653
Query: 731 LVPQLIDELKKAGRSDIV 784
L+PQ+I EL+K GR DI+
Sbjct: 654 LIPQVIAELEKLGRPDIL 671
>sp|Q05065|MUTB_STRCM Methylmalonyl-CoA mutase large subunit (MCM-alpha)
Length = 733
Score = 290 bits (742), Expect = 3e-78
Identities = 143/258 (55%), Positives = 188/258 (72%), Gaps = 5/258 (1%)
Frame = +2
Query: 26 IEEIEAMGGMAKAVSEGIPKLKIEECAAKRQAHIDSGQEVIVGVNKYRLENPEKVDVLHI 205
IEE+EA GGMA+A+ GIPKL++EE AA+ QA IDSG++ ++GVNKYR++ E++DVL +
Sbjct: 427 IEEVEAAGGMAQAIDAGIPKLRVEEAAARTQARIDSGRQPVIGVNKYRVDTDEQIDVLKV 486
Query: 206 DNTKVRESQIAKINALKQSRDNNKAQNILKKLEECCRSG-----HGNLLEIAVDASRARC 370
DN+ VR QI K+ L++ RD+ Q+ L+ L G GNLL +AVDA+RA+
Sbjct: 487 DNSSVRAQQIEKLRRLREERDDAACQDALRALTAAAERGPGQGLEGNLLALAVDAARAKA 546
Query: 371 TVGEITDAMVAAYGRHVAVGRLVSGAYKSEFGDNKEIAAVLKKVEDFLKNEGRRPRILIA 550
TVGEI+DA+ + YGRH R +SG Y++E G + + V+ F + EGRRPRIL+A
Sbjct: 547 TVGEISDALESVYGRHAGQIRTISGVYRTEAGQSPSVERTRALVDAFDEAEGRRPRILVA 606
Query: 551 KLGQDGHDRGGKVIATGFSDLGFDVDVGPLFSTPKEAVEQAVDADVHVIGVSSLAAGHMT 730
K+GQDGHDRG KVIA+ F+DLGFDVDVGPLF TP E QAV+ADVH++GVSSLAAGH+T
Sbjct: 607 KMGQDGHDRGQKVIASAFADLGFDVDVGPLFQTPAEVARQAVEADVHIVGVSSLAAGHLT 666
Query: 731 LVPQLIDELKKAGRSDIV 784
LVP L +EL GR DI+
Sbjct: 667 LVPALREELAAEGRDDIM 684
>sp|P65487|MUTB_MYCTU Probable methylmalonyl-CoA mutase large subunit (MCM)
sp|P65488|MUTB_MYCBO Probable methylmalonyl-CoA mutase large subunit (MCM)
Length = 750
Score = 274 bits (700), Expect = 2e-73
Identities = 143/261 (54%), Positives = 185/261 (70%), Gaps = 8/261 (3%)
Frame = +2
Query: 26 IEEIEAMGGMAKAVSEGIPKLKIEECAAKRQAHIDSGQEVIVGVNKYRLENPEKVDVLHI 205
I E+ GGMA+A+S+GIPKL+IEE AA+ QA IDSGQ+ +VGVNKY++ +++VL +
Sbjct: 440 IAEVAEHGGMAQAISDGIPKLRIEEAAARTQARIDSGQQPVVGVNKYQVPEDHEIEVLKV 499
Query: 206 DNTKVRESQIAKINALKQSRDNNKAQNILKKLEECC----RSGH----GNLLEIAVDASR 361
+N++VR Q+AK+ L+ RD + L +L R+G NLL +A+DA+R
Sbjct: 500 ENSRVRAEQLAKLQRLRAGRDEPAVRAALAELTRAAAEQGRAGADGLGNNLLALAIDAAR 559
Query: 362 ARCTVGEITDAMVAAYGRHVAVGRLVSGAYKSEFGDNKEIAAVLKKVEDFLKNEGRRPRI 541
A+ TVGEI++A+ YGRH A R +SG Y+ E G IAA + VE F + +GRRPRI
Sbjct: 560 AQATVGEISEALEKVYGRHRAEIRTISGVYRDEVGKAPNIAAATELVEKFAEADGRRPRI 619
Query: 542 LIAKLGQDGHDRGGKVIATGFSDLGFDVDVGPLFSTPKEAVEQAVDADVHVIGVSSLAAG 721
LIAK+GQDGHDRG KVIAT F+D+GFDVDVG LFSTP+E QA D DVHVIGVSSLAAG
Sbjct: 620 LIAKMGQDGHDRGQKVIATAFADIGFDVDVGSLFSTPEEVARQAADNDVHVIGVSSLAAG 679
Query: 722 HMTLVPQLIDELKKAGRSDIV 784
H+TLVP L D L + GR DI+
Sbjct: 680 HLTLVPALRDALAQVGRPDIM 700
>sp|P11653|MUTB_PROFR Methylmalonyl-CoA mutase large subunit (MCM-alpha)
Length = 728
Score = 271 bits (692), Expect = 2e-72
Identities = 138/258 (53%), Positives = 182/258 (70%), Gaps = 5/258 (1%)
Frame = +2
Query: 26 IEEIEAMGGMAKAVSEGIPKLKIEECAAKRQAHIDSGQEVIVGVNKYRLENPEKVDVLHI 205
I+E+E +GGMAKA+ +GIPK++IEE AA+ QA IDSG++ ++GVNKYRLE+ +DVL +
Sbjct: 424 IQEVEKVGGMAKAIEKGIPKMRIEEAAARTQARIDSGRQPLIGVNKYRLEHEPPLDVLKV 483
Query: 206 DNTKVRESQIAKINALKQSRDNNKAQNILKKLEECC-----RSGHGNLLEIAVDASRARC 370
DN+ V Q AK+ L+ RD K + L K+ + NLL++ +DA RA
Sbjct: 484 DNSTVLAEQKAKLVKLRAERDPEKVKAALDKITWAAGNPDDKDPDRNLLKLCIDAGRAMA 543
Query: 371 TVGEITDAMVAAYGRHVAVGRLVSGAYKSEFGDNKEIAAVLKKVEDFLKNEGRRPRILIA 550
TVGE++DA+ +GR+ A R +SG Y E + E+ + VE+F + EGRRPRIL+A
Sbjct: 544 TVGEMSDALEKVFGRYTAQIRTISGVYSKEVKNTPEVEEARELVEEFEQAEGRRPRILLA 603
Query: 551 KLGQDGHDRGGKVIATGFSDLGFDVDVGPLFSTPKEAVEQAVDADVHVIGVSSLAAGHMT 730
K+GQDGHDRG KVIAT ++DLGFDVDVGPLF TP+E QAV+ADVHV+GVSSLA GH+T
Sbjct: 604 KMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQAVEADVHVVGVSSLAGGHLT 663
Query: 731 LVPQLIDELKKAGRSDIV 784
LVP L EL K GR DI+
Sbjct: 664 LVPALRKELDKLGRPDIL 681
>sp|O86028|MUTB_RHIME Methylmalonyl-CoA mutase (MCM)
Length = 712
Score = 269 bits (687), Expect = 7e-72
Identities = 134/254 (52%), Positives = 180/254 (70%)
Frame = +2
Query: 23 VIEEIEAMGGMAKAVSEGIPKLKIEECAAKRQAHIDSGQEVIVGVNKYRLENPEKVDVLH 202
+IEE+EA+GGM KAV+ G+PK IEE A +RQA +D +EVIVGVNKYRLEN + +D+L
Sbjct: 411 LIEEVEALGGMTKAVNAGLPKRLIEEAATRRQAAVDRAEEVIVGVNKYRLENEQPIDILQ 470
Query: 203 IDNTKVRESQIAKINALKQSRDNNKAQNILKKLEECCRSGHGNLLEIAVDASRARCTVGE 382
IDN VR +Q+ +I ++ RD+ K + L L + RSG GNLL AV+A+RAR TVGE
Sbjct: 471 IDNAAVRTAQVKRIEETRRRRDSQKMKQALDALADVARSGKGNLLAAAVEAARARATVGE 530
Query: 383 ITDAMVAAYGRHVAVGRLVSGAYKSEFGDNKEIAAVLKKVEDFLKNEGRRPRILIAKLGQ 562
ITDAM A+G + A+ +V+ Y + + E+ + ++ + K G +P+I++AKLGQ
Sbjct: 531 ITDAMREAFGDYTAIPEVVTDIYGKAYEGDPELGVLAGRLGEATKRLGHKPKIMVAKLGQ 590
Query: 563 DGHDRGGKVIATGFSDLGFDVDVGPLFSTPKEAVEQAVDADVHVIGVSSLAAGHMTLVPQ 742
DGHDRG KVIA+ F D+GFDV GPLF TP+EA + A+ +V VIGVSSLAAGH TL+PQ
Sbjct: 591 DGHDRGAKVIASAFGDIGFDVVAGPLFQTPEEAADLALAEEVTVIGVSSLAAGHRTLMPQ 650
Query: 743 LIDELKKAGRSDIV 784
L + LKK G DI+
Sbjct: 651 LAEALKKRGGEDII 664
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,499,461
Number of Sequences: 369166
Number of extensions: 1412849
Number of successful extensions: 4941
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4932
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7357347200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)