Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_C18
(352 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P05085|ARGR2_YEAST Arginine metabolism regulation protei... 31 0.77
sp|Q9K6Z0|HISZ_BACHD ATP phosphoribosyltransferase regulato... 31 0.77
sp|Q9V4Q0|GR43B_DROME Putative chemosensory receptor 43b 30 1.3
sp|P07770|BENB_ACIAD Benzoate 1,2-dioxygenase beta subunit 29 3.8
sp|P67023|SYE_STRP1 Glutamyl-tRNA synthetase (Glutamate--tR... 28 5.0
sp|Q8K8P9|SYE_STRP3 Glutamyl-tRNA synthetase (Glutamate--tR... 28 5.0
>sp|P05085|ARGR2_YEAST Arginine metabolism regulation protein II
Length = 880
Score = 31.2 bits (69), Expect = 0.77
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Frame = +2
Query: 74 QYAKPTQFQTYGQIFPKNNRPVFREINNVTRKPEATKGNIEPVSYG---IYH 220
+++KP QF YG P+N+ ++ +P+ + NI+ V Y +YH
Sbjct: 56 RWSKPMQFDPYGVPIPQNSPATTTNLSGSVDEPQYQRRNIDFVRYDEEYVYH 107
>sp|Q9K6Z0|HISZ_BACHD ATP phosphoribosyltransferase regulatory subunit
Length = 397
Score = 31.2 bits (69), Expect = 0.77
Identities = 20/92 (21%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Frame = +2
Query: 2 PDWYHRKREYIRGADQKVMNWHYDQYAKPT--QFQTYGQIFPKNNRPVFREI----NNVT 163
P+WY K+ +++ W YD PT ++T G + ++ +F+ + N +
Sbjct: 18 PEWYKTKKNICDQMTEEINLWGYDMIETPTLEYYETVGVVSAILDQQLFKLLDQQGNTLV 77
Query: 164 RKPEATKGNIEPVSYGIY-HSYPMRTSSNKSV 256
+P+ T V+ + +YP+R + +V
Sbjct: 78 LRPDMTAPIARLVASSLKDRAYPLRLAYQSNV 109
>sp|Q9V4Q0|GR43B_DROME Putative chemosensory receptor 43b
Length = 430
Score = 30.4 bits (67), Expect = 1.3
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Frame = +3
Query: 111 KYFPRTIGLYLEKSIM*LENRKQQRGILNLLVMGFIIAIL*GPV------RINRFLICTI 272
+YF +G+Y+ +++ ++ K Q +++L+V+G +I +L + R RFL T+
Sbjct: 88 QYFVLGLGIYIHITLV--QDSKAQNFLMSLIVLGIVIGVLRRLLIFLHLKRDRRFLKHTV 145
Query: 273 KHNKHFYLVLEQ 308
H LEQ
Sbjct: 146 NEILHITSALEQ 157
>sp|P07770|BENB_ACIAD Benzoate 1,2-dioxygenase beta subunit
Length = 169
Score = 28.9 bits (63), Expect = 3.8
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 9/42 (21%)
Frame = -1
Query: 208 ITNRFNIPLCCFRF---------SSYIIDFSKYRPIVLGKYL 110
IT RFN FR+ S Y+IDFS +P +L KY+
Sbjct: 112 ITVRFNWNTLSFRYKNSYSYFGMSRYVIDFSGEQPKILSKYV 153
>sp|P67023|SYE_STRP1 Glutamyl-tRNA synthetase (Glutamate--tRNA ligase) (GluRS)
sp|P67024|SYE_STRP8 Glutamyl-tRNA synthetase (Glutamate--tRNA ligase) (GluRS)
sp|Q5XDZ4|SYE_STRP6 Glutamyl-tRNA synthetase (Glutamate--tRNA ligase) (GluRS)
Length = 481
Score = 28.5 bits (62), Expect = 5.0
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 10/81 (12%)
Frame = +2
Query: 44 DQKVMNWHYDQYAKPTQFQTYGQIFPKNNRPVFREINNVTRKPE----------ATKGNI 193
DQK M+W ++Y K F+T + +P E +T K E + I
Sbjct: 320 DQKKMDWMSNEYLKHADFETVYALC----KPFLEEAGRLTEKAEKLVELYKPQLKSADEI 375
Query: 194 EPVSYGIYHSYPMRTSSNKSV 256
P++ + +P T + K V
Sbjct: 376 IPLTDLFFSDFPELTEAEKEV 396
>sp|Q8K8P9|SYE_STRP3 Glutamyl-tRNA synthetase (Glutamate--tRNA ligase) (GluRS)
Length = 481
Score = 28.5 bits (62), Expect = 5.0
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 10/81 (12%)
Frame = +2
Query: 44 DQKVMNWHYDQYAKPTQFQTYGQIFPKNNRPVFREINNVTRKPE----------ATKGNI 193
DQK M+W ++Y K F+T + +P E +T K E + I
Sbjct: 320 DQKKMDWMSNEYLKHADFETVYALC----KPFLEEAGRLTEKAEKLVELYKPQLKSADEI 375
Query: 194 EPVSYGIYHSYPMRTSSNKSV 256
P++ + +P T + K V
Sbjct: 376 IPLTDLFFSDFPELTEAEKEV 396
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,579,676
Number of Sequences: 369166
Number of extensions: 879117
Number of successful extensions: 1930
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1930
length of database: 68,354,980
effective HSP length: 84
effective length of database: 52,837,240
effective search space used: 1690791680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)