Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_C16-2
(232 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q96682|TERM_ADECR DNA terminal protein (Bellett protein)... 28 5.1
sp|P29074|PTN4_HUMAN Tyrosine-protein phosphatase, non-rece... 28 6.7
sp|Q65947|TERM_ADECC DNA terminal protein (Bellett protein)... 28 6.7
sp|P21968|UNG_FOWPV Uracil-DNA glycosylase (UDG) 28 8.7
>sp|Q96682|TERM_ADECR DNA terminal protein (Bellett protein) (pTP protein)
Length = 723
Score = 28.5 bits (62), Expect = 5.1
Identities = 21/61 (34%), Positives = 31/61 (50%)
Frame = +1
Query: 46 TKNILAKFRDLQTGGNSNVTQTISMEPSDELPAPNTTKNLMGTFFSSRpreI*RKMQTEN 225
T L++F+ +Q+ + +VT++I S LP P L G F Rpre R + E
Sbjct: 382 TDPTLSQFQTIQSLPSQSVTKSIISALS--LPGPAPCTPLSGGAFELRpreNGRAVTEEM 439
Query: 226 R 228
R
Sbjct: 440 R 440
>sp|P29074|PTN4_HUMAN Tyrosine-protein phosphatase, non-receptor type 4 (Protein-tyrosine
phosphatase MEG1) (PTPase-MEG1) (MEG)
Length = 926
Score = 28.1 bits (61), Expect = 6.7
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +1
Query: 10 DVLTDELPAPDTTKNILAKFRDLQTGGNSNVTQTISMEPSDELPAPN 150
D+LT LP P T +LA F G+ + ++ +S SD PN
Sbjct: 133 DILTGRLPCPSNTAALLASFAVQSELGDYDQSENLSGYLSDYSFIPN 179
>sp|Q65947|TERM_ADECC DNA terminal protein (Bellett protein) (pTP protein)
Length = 608
Score = 28.1 bits (61), Expect = 6.7
Identities = 20/57 (35%), Positives = 30/57 (52%)
Frame = +1
Query: 58 LAKFRDLQTGGNSNVTQTISMEPSDELPAPNTTKNLMGTFFSSRpreI*RKMQTENR 228
L++F+ +Q+ + +VT++I S LP P L G F Rpre R + E R
Sbjct: 271 LSQFQTIQSLPSQSVTKSIISALS--LPGPAPCTPLSGGAFELRpreNGRAVTEEMR 325
>sp|P21968|UNG_FOWPV Uracil-DNA glycosylase (UDG)
Length = 218
Score = 27.7 bits (60), Expect = 8.7
Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +2
Query: 65 NLEIYKPVVIVMLHKLLAWNHQMNCQ--LRTQQKI*WERFS 181
N+ ++K + + +LAWN+ ++C+ KI WER +
Sbjct: 101 NVRLFKNYNFLFVEGVLAWNYYLSCREGETKSHKIFWERLA 141
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,153,203
Number of Sequences: 369166
Number of extensions: 474181
Number of successful extensions: 1356
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1355
length of database: 68,354,980
effective HSP length: 47
effective length of database: 59,672,435
effective search space used: 1730500615
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)