Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_C11
(763 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P55277|VATL_HELVI Vacuolar ATP synthase 16 kDa proteolip... 197 2e-50
sp|P31403|VATL_MANSE Vacuolar ATP synthase 16 kDa proteolip... 196 6e-50
sp|Q03105|VATL_TORMA Vacuolar ATP synthase 16 kDa proteolip... 195 1e-49
sp|P27449|VATL_HUMAN Vacuolar ATP synthase 16 kDa proteolip... 195 1e-49
sp|P23380|VATL_DROME Vacuolar ATP synthase 16 kDa proteolip... 194 2e-49
sp|P63081|VATL_RAT Vacuolar ATP synthase 16 kDa proteolipid... 194 2e-49
sp|O16110|VATL_AEDAE Vacuolar ATP synthase 16 kDa proteolip... 194 2e-49
sp|Q26250|VATL_NEPNO Vacuolar ATP synthase 16 kDa proteolip... 194 2e-49
sp|P23956|VATL_BOVIN Vacuolar ATP synthase 16 kDa proteolip... 194 3e-49
sp|O18882|VATL_SHEEP Vacuolar ATP synthase 16 kDa proteolip... 194 3e-49
>sp|P55277|VATL_HELVI Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 156
Score = 197 bits (502), Expect = 2e-50
Identities = 108/154 (70%), Positives = 120/154 (77%), Gaps = 3/154 (1%)
Frame = +2
Query: 311 MSESPIYTPFFGVMGVTSAMVFCALGAAYGTAKSGTGISSMAVMRPELIMKSIIPVVMAG 490
M+E+PIY PFFGVMG SA++F ALGAAYGTAKSGTGI++M+VMRPELIMKSIIPVVMAG
Sbjct: 1 MAENPIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAG 60
Query: 491 IIAIYGLVVAVLIAQQINI---TYSMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRG 661
IIAIYGLVVAVLIA ++ Y++ K H IGIVGDAGVRG
Sbjct: 61 IIAIYGLVVAVLIAGSLDAPSNNYTLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRG 120
Query: 662 TAQQPRLFVGMILILIFAEVLGLYGLIVALILST 763
TAQQPRLFVGMILILIFAEVLGLYGLIVA+ L T
Sbjct: 121 TAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYT 154
>sp|P31403|VATL_MANSE Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 156
Score = 196 bits (498), Expect = 6e-50
Identities = 107/154 (69%), Positives = 120/154 (77%), Gaps = 3/154 (1%)
Frame = +2
Query: 311 MSESPIYTPFFGVMGVTSAMVFCALGAAYGTAKSGTGISSMAVMRPELIMKSIIPVVMAG 490
M+E+PIY PFFGVMG SA++F ALGAAYGTAKSGTGI++M+VMRPELIMKSIIPVVMAG
Sbjct: 1 MAENPIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAG 60
Query: 491 IIAIYGLVVAVLIAQQINI---TYSMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRG 661
IIAIYGLVVAVLIA ++ Y++ + H IGIVGDAGVRG
Sbjct: 61 IIAIYGLVVAVLIAGSLDSPSNNYTLYRGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRG 120
Query: 662 TAQQPRLFVGMILILIFAEVLGLYGLIVALILST 763
TAQQPRLFVGMILILIFAEVLGLYGLIVA+ L T
Sbjct: 121 TAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYT 154
>sp|Q03105|VATL_TORMA Vacuolar ATP synthase 16 kDa proteolipid subunit (15 kDa
mediatophore protein)
Length = 154
Score = 195 bits (496), Expect = 1e-49
Identities = 108/153 (70%), Positives = 119/153 (77%)
Frame = +2
Query: 305 LSMSESPIYTPFFGVMGVTSAMVFCALGAAYGTAKSGTGISSMAVMRPELIMKSIIPVVM 484
+S +P Y+ FFGV+G ++AMVF ALGAAYGTAKSGTGI++M+VMRPELIMKSIIPVVM
Sbjct: 1 MSTPGAPEYSAFFGVIGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVM 60
Query: 485 AGIIAIYGLVVAVLIAQQINITYSMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGT 664
AGIIAIYGLVVAVLIA + S+ KS IGIVGDAGVRGT
Sbjct: 61 AGIIAIYGLVVAVLIANSLTEDISLFKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGT 120
Query: 665 AQQPRLFVGMILILIFAEVLGLYGLIVALILST 763
AQQPRLFVGMILILIFAEVLGLYGLIVALILST
Sbjct: 121 AQQPRLFVGMILILIFAEVLGLYGLIVALILST 153
>sp|P27449|VATL_HUMAN Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 155
Score = 195 bits (495), Expect = 1e-49
Identities = 111/154 (72%), Positives = 118/154 (76%), Gaps = 3/154 (1%)
Frame = +2
Query: 311 MSES---PIYTPFFGVMGVTSAMVFCALGAAYGTAKSGTGISSMAVMRPELIMKSIIPVV 481
MSES P Y FF VMG ++AMVF ALGAAYGTAKSGTGI++M+VMRPE IMKSIIPVV
Sbjct: 1 MSESKSGPEYASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEQIMKSIIPVV 60
Query: 482 MAGIIAIYGLVVAVLIAQQINITYSMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRG 661
MAGIIAIYGLVVAVLIA +N S+ KS IGIVGDAGVRG
Sbjct: 61 MAGIIAIYGLVVAVLIANSLNDDISLYKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRG 120
Query: 662 TAQQPRLFVGMILILIFAEVLGLYGLIVALILST 763
TAQQPRLFVGMILILIFAEVLGLYGLIVALILST
Sbjct: 121 TAQQPRLFVGMILILIFAEVLGLYGLIVALILST 154
>sp|P23380|VATL_DROME Vacuolar ATP synthase 16 kDa proteolipid subunit (Ductin) (VHA16K)
Length = 159
Score = 194 bits (494), Expect = 2e-49
Identities = 107/152 (70%), Positives = 118/152 (77%), Gaps = 2/152 (1%)
Frame = +2
Query: 314 SESPIYTPFFGVMGVTSAMVFCALGAAYGTAKSGTGISSMAVMRPELIMKSIIPVVMAGI 493
S++PIY PFFGVMG SA++F ALGAAYGTAKSGTGI++M+VMRPELIMKSIIPVVMAGI
Sbjct: 7 SDNPIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGI 66
Query: 494 IAIYGLVVAVLIAQQIN--ITYSMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTA 667
IAIYGLVVAVLIA + YS+ + H IGIVGDAGVRGTA
Sbjct: 67 IAIYGLVVAVLIAGALEEPSKYSLYRGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTA 126
Query: 668 QQPRLFVGMILILIFAEVLGLYGLIVALILST 763
QQPRLFVGMILILIFAEVLGLYGLIVA+ L T
Sbjct: 127 QQPRLFVGMILILIFAEVLGLYGLIVAIYLYT 158
>sp|P63081|VATL_RAT Vacuolar ATP synthase 16 kDa proteolipid subunit
sp|P63082|VATL_MOUSE Vacuolar ATP synthase 16 kDa proteolipid subunit (PL16)
Length = 155
Score = 194 bits (494), Expect = 2e-49
Identities = 106/151 (70%), Positives = 118/151 (78%)
Frame = +2
Query: 311 MSESPIYTPFFGVMGVTSAMVFCALGAAYGTAKSGTGISSMAVMRPELIMKSIIPVVMAG 490
+ +P Y+ FFGVMG +SAMVF A+GAAYGTAKSGTGI++M+VMRPELIMKSIIPVVMAG
Sbjct: 4 IKNNPEYSSFFGVMGASSAMVFSAMGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAG 63
Query: 491 IIAIYGLVVAVLIAQQINITYSMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQ 670
IIAIYGLVVAVLIA + ++ +S IGIVGDAGVRGTAQ
Sbjct: 64 IIAIYGLVVAVLIANSLTDGITLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQ 123
Query: 671 QPRLFVGMILILIFAEVLGLYGLIVALILST 763
QPRLFVGMILILIFAEVLGLYGLIVALILST
Sbjct: 124 QPRLFVGMILILIFAEVLGLYGLIVALILST 154
>sp|O16110|VATL_AEDAE Vacuolar ATP synthase 16 kDa proteolipid subunit (V-ATPase
C-subunit)
Length = 157
Score = 194 bits (494), Expect = 2e-49
Identities = 106/151 (70%), Positives = 117/151 (77%), Gaps = 2/151 (1%)
Frame = +2
Query: 317 ESPIYTPFFGVMGVTSAMVFCALGAAYGTAKSGTGISSMAVMRPELIMKSIIPVVMAGII 496
E P+Y PFFGVMG +A++F ALGAAYGTAKSGTGI++M+VMRPELIMKSIIPVVMAGII
Sbjct: 6 EKPVYGPFFGVMGAAAAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGII 65
Query: 497 AIYGLVVAVLIAQQIN--ITYSMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQ 670
AIYGLVVAVLIA ++ YS+ K H IGIVGDAGVRGTAQ
Sbjct: 66 AIYGLVVAVLIAGSLDTPTKYSLYKGFIHLGAGLAVGISGLAAGFAIGIVGDAGVRGTAQ 125
Query: 671 QPRLFVGMILILIFAEVLGLYGLIVALILST 763
QPRLFVGMILILIFAEVLGLYGLIVA+ L T
Sbjct: 126 QPRLFVGMILILIFAEVLGLYGLIVAIYLYT 156
>sp|Q26250|VATL_NEPNO Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 159
Score = 194 bits (493), Expect = 2e-49
Identities = 107/155 (69%), Positives = 120/155 (77%), Gaps = 2/155 (1%)
Frame = +2
Query: 305 LSMSESPIYTPFFGVMGVTSAMVFCALGAAYGTAKSGTGISSMAVMRPELIMKSIIPVVM 484
+S SP+Y+PFFGVMG SAMVF ALGAAYGTAKSG GIS+M+VMRPELIMK IIPVVM
Sbjct: 1 MSEEGSPMYSPFFGVMGAASAMVFSALGAAYGTAKSGVGISAMSVMRPELIMKCIIPVVM 60
Query: 485 AGIIAIYGLVVAVLIAQQIN--ITYSMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVR 658
AGIIAIYGLVVAVLIA +++ TY++ + H IGIVGDAGVR
Sbjct: 61 AGIIAIYGLVVAVLIAGKLDEAPTYTLYQGFVHMGAGLSVGLSGLAAGFAIGIVGDAGVR 120
Query: 659 GTAQQPRLFVGMILILIFAEVLGLYGLIVALILST 763
GTAQQPRL+VGMILILIFAEVLGLYGLIVA+ L T
Sbjct: 121 GTAQQPRLYVGMILILIFAEVLGLYGLIVAIFLYT 155
>sp|P23956|VATL_BOVIN Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 155
Score = 194 bits (492), Expect = 3e-49
Identities = 109/154 (70%), Positives = 119/154 (77%), Gaps = 3/154 (1%)
Frame = +2
Query: 311 MSES---PIYTPFFGVMGVTSAMVFCALGAAYGTAKSGTGISSMAVMRPELIMKSIIPVV 481
MSE+ P Y FF VMG ++AMVF ALGAAYGTAKSGTGI++M+VMRPE+IMKSIIPVV
Sbjct: 1 MSEAKNGPEYASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEMIMKSIIPVV 60
Query: 482 MAGIIAIYGLVVAVLIAQQINITYSMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRG 661
MAGIIAIYGLVVAVLIA +N S+ +S IGIVGDAGVRG
Sbjct: 61 MAGIIAIYGLVVAVLIANSLNDGISLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRG 120
Query: 662 TAQQPRLFVGMILILIFAEVLGLYGLIVALILST 763
TAQQPRLFVGMILILIFAEVLGLYGLIVALILST
Sbjct: 121 TAQQPRLFVGMILILIFAEVLGLYGLIVALILST 154
>sp|O18882|VATL_SHEEP Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 155
Score = 194 bits (492), Expect = 3e-49
Identities = 109/154 (70%), Positives = 119/154 (77%), Gaps = 3/154 (1%)
Frame = +2
Query: 311 MSES---PIYTPFFGVMGVTSAMVFCALGAAYGTAKSGTGISSMAVMRPELIMKSIIPVV 481
MSE+ P Y FF VMG ++AMVF ALGAAYGTAKSGTGI++M+VMRPE+IMKSIIPVV
Sbjct: 1 MSEAKSGPEYASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEMIMKSIIPVV 60
Query: 482 MAGIIAIYGLVVAVLIAQQINITYSMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRG 661
MAGIIAIYGLVVAVLIA +N S+ +S IGIVGDAGVRG
Sbjct: 61 MAGIIAIYGLVVAVLIANSLNDGISLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRG 120
Query: 662 TAQQPRLFVGMILILIFAEVLGLYGLIVALILST 763
TAQQPRLFVGMILILIFAEVLGLYGLIVALILST
Sbjct: 121 TAQQPRLFVGMILILIFAEVLGLYGLIVALILST 154
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,814,836
Number of Sequences: 369166
Number of extensions: 1585501
Number of successful extensions: 3945
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3875
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7018522000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)