Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_C08
(515 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q5E9A1|NACA_BOVIN Nascent polypeptide-associated complex... 140 1e-33
sp|Q13765|NACA_HUMAN Nascent polypeptide-associated complex... 140 1e-33
sp|Q60817|NACA_MOUSE Nascent polypeptide-associated complex... 140 1e-33
sp|Q68F90|NACA_XENTR Nascent polypeptide-associated complex... 140 1e-33
sp|P70670|NACAM_MOUSE Nascent polypeptide-associated comple... 140 1e-33
sp|Q8AWF2|NACA_ORENI Nascent polypeptide-associated complex... 140 2e-33
sp|Q8JIU7|NACA_BRARE Nascent polypeptide-associated complex... 139 5e-33
sp|Q6IP73|NACA_XENLA Nascent polypeptide-associated complex... 139 5e-33
sp|Q6QN10|NACA_CHILA Nascent polypeptide-associated complex... 138 7e-33
sp|Q5R9I9|NACA_PONPY Nascent polypeptide-associated complex... 138 9e-33
>sp|Q5E9A1|NACA_BOVIN Nascent polypeptide-associated complex alpha subunit (NAC-alpha)
(Alpha-NAC)
Length = 215
Score = 140 bits (354), Expect = 1e-33
Identities = 80/144 (55%), Positives = 94/144 (65%)
Frame = +2
Query: 2 LSKSKQSRSEKKARKAMSKLGLKHVTGVNRVAIRKSKNILFVVGQPEVFKSPASDTYVVF 181
+SK+KQSRSEKKARKAMSKLGL+ VTGV RV IRKSKNILFV+ +P+V+KSPASDTY+VF
Sbjct: 64 VSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVF 123
Query: 182 GEAKIEDXXXXXXXXXXXXXXXXXXXXXTDNXXXXXXXXXXXXETIQEESDGEEEDATGL 361
GEAKIED T+QEES+ EE D TG+
Sbjct: 124 GEAKIED-------LSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGV 176
Query: 362 CENDIKLIMDQAQVSRNKAIRALK 433
DI+L+M QA VSR KA+RALK
Sbjct: 177 EVKDIELVMSQANVSRAKAVRALK 200
>sp|Q13765|NACA_HUMAN Nascent polypeptide-associated complex alpha subunit (NAC-alpha)
(Alpha-NAC) (Hom s 2.02)
Length = 215
Score = 140 bits (354), Expect = 1e-33
Identities = 80/144 (55%), Positives = 94/144 (65%)
Frame = +2
Query: 2 LSKSKQSRSEKKARKAMSKLGLKHVTGVNRVAIRKSKNILFVVGQPEVFKSPASDTYVVF 181
+SK+KQSRSEKKARKAMSKLGL+ VTGV RV IRKSKNILFV+ +P+V+KSPASDTY+VF
Sbjct: 64 VSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVF 123
Query: 182 GEAKIEDXXXXXXXXXXXXXXXXXXXXXTDNXXXXXXXXXXXXETIQEESDGEEEDATGL 361
GEAKIED T+QEES+ EE D TG+
Sbjct: 124 GEAKIED-------LSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGV 176
Query: 362 CENDIKLIMDQAQVSRNKAIRALK 433
DI+L+M QA VSR KA+RALK
Sbjct: 177 EVKDIELVMSQANVSRAKAVRALK 200
>sp|Q60817|NACA_MOUSE Nascent polypeptide-associated complex alpha subunit (Alpha-NAC)
(Alpha-NAC/1.9.2)
Length = 215
Score = 140 bits (354), Expect = 1e-33
Identities = 80/144 (55%), Positives = 94/144 (65%)
Frame = +2
Query: 2 LSKSKQSRSEKKARKAMSKLGLKHVTGVNRVAIRKSKNILFVVGQPEVFKSPASDTYVVF 181
+SK+KQSRSEKKARKAMSKLGL+ VTGV RV IRKSKNILFV+ +P+V+KSPASDTY+VF
Sbjct: 64 VSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVF 123
Query: 182 GEAKIEDXXXXXXXXXXXXXXXXXXXXXTDNXXXXXXXXXXXXETIQEESDGEEEDATGL 361
GEAKIED T+QEES+ EE D TG+
Sbjct: 124 GEAKIED-------LSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGV 176
Query: 362 CENDIKLIMDQAQVSRNKAIRALK 433
DI+L+M QA VSR KA+RALK
Sbjct: 177 EVKDIELVMSQANVSRAKAVRALK 200
>sp|Q68F90|NACA_XENTR Nascent polypeptide-associated complex alpha subunit (NAC-alpha)
(Alpha-NAC)
Length = 214
Score = 140 bits (354), Expect = 1e-33
Identities = 80/144 (55%), Positives = 94/144 (65%)
Frame = +2
Query: 2 LSKSKQSRSEKKARKAMSKLGLKHVTGVNRVAIRKSKNILFVVGQPEVFKSPASDTYVVF 181
+SK+KQSRSEKKARKAMSKLGL+ VTGV RV IRKSKNILFV+ +P+V+KSPASDTY+VF
Sbjct: 63 VSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVF 122
Query: 182 GEAKIEDXXXXXXXXXXXXXXXXXXXXXTDNXXXXXXXXXXXXETIQEESDGEEEDATGL 361
GEAKIED T+QEES+ EE D TG+
Sbjct: 123 GEAKIED-------LSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGV 175
Query: 362 CENDIKLIMDQAQVSRNKAIRALK 433
DI+L+M QA VSR KA+RALK
Sbjct: 176 EVKDIELVMSQANVSRAKAVRALK 199
>sp|P70670|NACAM_MOUSE Nascent polypeptide-associated complex alpha subunit, muscle-specific
form (Alpha-NAC, muscle-specific form)
Length = 2187
Score = 140 bits (354), Expect = 1e-33
Identities = 80/144 (55%), Positives = 94/144 (65%)
Frame = +2
Query: 2 LSKSKQSRSEKKARKAMSKLGLKHVTGVNRVAIRKSKNILFVVGQPEVFKSPASDTYVVF 181
+SK+KQSRSEKKARKAMSKLGL+ VTGV RV IRKSKNILFV+ +P+V+KSPASDTY+VF
Sbjct: 2036 VSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVF 2095
Query: 182 GEAKIEDXXXXXXXXXXXXXXXXXXXXXTDNXXXXXXXXXXXXETIQEESDGEEEDATGL 361
GEAKIED T+QEES+ EE D TG+
Sbjct: 2096 GEAKIED-------LSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGV 2148
Query: 362 CENDIKLIMDQAQVSRNKAIRALK 433
DI+L+M QA VSR KA+RALK
Sbjct: 2149 EVKDIELVMSQANVSRAKAVRALK 2172
>sp|Q8AWF2|NACA_ORENI Nascent polypeptide-associated complex alpha subunit (NAC-alpha)
(Alpha-NAC)
Length = 215
Score = 140 bits (353), Expect = 2e-33
Identities = 80/144 (55%), Positives = 94/144 (65%)
Frame = +2
Query: 2 LSKSKQSRSEKKARKAMSKLGLKHVTGVNRVAIRKSKNILFVVGQPEVFKSPASDTYVVF 181
+SK+KQSRSEKKARKAMSKLGL+ VTGV RV IRKSKNILFV+ +P+V+KSPASDTY+VF
Sbjct: 64 VSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVF 123
Query: 182 GEAKIEDXXXXXXXXXXXXXXXXXXXXXTDNXXXXXXXXXXXXETIQEESDGEEEDATGL 361
GEAKIED T+QEES+ EE D TG+
Sbjct: 124 GEAKIED-------LSQQAQLAAAEKFKVPGETVSNVQENTQTPTVQEESEEEEVDETGV 176
Query: 362 CENDIKLIMDQAQVSRNKAIRALK 433
DI+L+M QA VSR KA+RALK
Sbjct: 177 EVKDIELVMSQANVSRAKAVRALK 200
>sp|Q8JIU7|NACA_BRARE Nascent polypeptide-associated complex alpha subunit (NAC-alpha)
(Alpha-NAC)
Length = 215
Score = 139 bits (349), Expect = 5e-33
Identities = 79/144 (54%), Positives = 93/144 (64%)
Frame = +2
Query: 2 LSKSKQSRSEKKARKAMSKLGLKHVTGVNRVAIRKSKNILFVVGQPEVFKSPASDTYVVF 181
+SK+KQSRSEKKARKAMSKLGL+ V GV RV IRKSKNILFV+ +P+V+KSPASDTY+VF
Sbjct: 64 VSKAKQSRSEKKARKAMSKLGLRQVAGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVF 123
Query: 182 GEAKIEDXXXXXXXXXXXXXXXXXXXXXTDNXXXXXXXXXXXXETIQEESDGEEEDATGL 361
GEAKIED T+QEES+ EE D TG+
Sbjct: 124 GEAKIED-------LSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGV 176
Query: 362 CENDIKLIMDQAQVSRNKAIRALK 433
DI+L+M QA VSR KA+RALK
Sbjct: 177 EVKDIELVMSQANVSRAKAVRALK 200
>sp|Q6IP73|NACA_XENLA Nascent polypeptide-associated complex alpha subunit (NAC-alpha)
(Alpha-NAC)
Length = 213
Score = 139 bits (349), Expect = 5e-33
Identities = 79/144 (54%), Positives = 93/144 (64%)
Frame = +2
Query: 2 LSKSKQSRSEKKARKAMSKLGLKHVTGVNRVAIRKSKNILFVVGQPEVFKSPASDTYVVF 181
+SK+KQSRSEKKARKAMSKLGL+ VTGV RV IRKSKNILFV+ +P+V+KSPASDTY+VF
Sbjct: 62 VSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVF 121
Query: 182 GEAKIEDXXXXXXXXXXXXXXXXXXXXXTDNXXXXXXXXXXXXETIQEESDGEEEDATGL 361
GEAKIED T+QEES+ EE D G+
Sbjct: 122 GEAKIED-------LSQQAQLAAAEKFKVQGETVSNIQENTQTPTVQEESEEEEVDEAGV 174
Query: 362 CENDIKLIMDQAQVSRNKAIRALK 433
DI+L+M QA VSR KA+RALK
Sbjct: 175 EVKDIELVMSQANVSRAKAVRALK 198
>sp|Q6QN10|NACA_CHILA Nascent polypeptide-associated complex alpha subunit (NAC-alpha)
(Alpha-NAC)
Length = 215
Score = 138 bits (348), Expect = 7e-33
Identities = 79/144 (54%), Positives = 93/144 (64%)
Frame = +2
Query: 2 LSKSKQSRSEKKARKAMSKLGLKHVTGVNRVAIRKSKNILFVVGQPEVFKSPASDTYVVF 181
+SK+KQSRSEKKARKAMSKLGL+ VTGV RV IRKSKNILFV+ +P+V+KSPASDTY+VF
Sbjct: 64 VSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVF 123
Query: 182 GEAKIEDXXXXXXXXXXXXXXXXXXXXXTDNXXXXXXXXXXXXETIQEESDGEEEDATGL 361
GEAKIED T+QEES+ EE D TG+
Sbjct: 124 GEAKIED-------LSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGV 176
Query: 362 CENDIKLIMDQAQVSRNKAIRALK 433
DI+ +M QA VSR KA+RALK
Sbjct: 177 EVKDIEWVMSQANVSRAKAVRALK 200
>sp|Q5R9I9|NACA_PONPY Nascent polypeptide-associated complex alpha subunit (NAC-alpha)
(Alpha-NAC)
Length = 215
Score = 138 bits (347), Expect = 9e-33
Identities = 79/144 (54%), Positives = 93/144 (64%)
Frame = +2
Query: 2 LSKSKQSRSEKKARKAMSKLGLKHVTGVNRVAIRKSKNILFVVGQPEVFKSPASDTYVVF 181
+SK+KQSRSEKKARKAMSKLGL+ VTGV RV IRKSKNILFV+ +P+V+KSPASDTY+VF
Sbjct: 64 VSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVF 123
Query: 182 GEAKIEDXXXXXXXXXXXXXXXXXXXXXTDNXXXXXXXXXXXXETIQEESDGEEEDATGL 361
GEAKIED T+QEES+ EE D T +
Sbjct: 124 GEAKIED-------LSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETDV 176
Query: 362 CENDIKLIMDQAQVSRNKAIRALK 433
DI+L+M QA VSR KA+RALK
Sbjct: 177 EVKDIELVMSQANVSRAKAVRALK 200
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,146,671
Number of Sequences: 369166
Number of extensions: 724282
Number of successful extensions: 2069
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2051
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3354254700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)