Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_C02
(684 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P55326|YZG1_CAEEL Hypothetical protein F13E6.1 in chromo... 76 7e-14
sp|Q62393|TPD52_MOUSE Tumor protein D52 (mD52) 68 3e-11
sp|P55327|TPD52_HUMAN Tumor protein D52 (N8 protein) 67 3e-11
sp|Q95212|TPD52_RABIT Tumor protein D52 (28 kDa calcium-dep... 66 7e-11
sp|O43399|TPD54_HUMAN Tumor protein D54 (hD54) (Tumor prote... 66 1e-10
sp|Q5RCT1|TPD54_PONPY Tumor protein D54 (Tumor protein D52-... 64 4e-10
sp|Q9I8F4|TPD53_CHICK Tumor protein D53 homolog (Tumor prot... 63 6e-10
sp|Q6PCT3|TPD54_RAT Tumor protein D54 (Tumor protein D52-li... 60 7e-09
sp|Q16890|TPD53_HUMAN Tumor protein D53 (hD53) (Tumor prote... 59 9e-09
sp|O54818|TPD53_MOUSE Tumor protein D53 (mD53) (Tumor prote... 59 9e-09
>sp|P55326|YZG1_CAEEL Hypothetical protein F13E6.1 in chromosome X
Length = 195
Score = 76.3 bits (186), Expect = 7e-14
Identities = 45/133 (33%), Positives = 74/133 (55%), Gaps = 3/133 (2%)
Frame = +2
Query: 83 SSDNTKDII---DEDSLREQLSKTEEEIITLRQVLNVKLKLAQDLKRQLGITVINEMKGD 253
SS + K ++ ++D LR +L KTEEEI TL+QVL+ + K A +LKR+LG+T +E+ D
Sbjct: 48 SSSSNKIVLSQAEKDLLRTELDKTEEEISTLKQVLSARQKHAAELKRKLGLTPFSELSQD 107
Query: 254 IIHGINTIKESNTFKATTNVMKNVKDXXXXXXXXXXXXXXQKIGLLRNTNTFKSIEGKMG 433
I + T+ +++ ++ T V D +K +RN++ FKS E K+G
Sbjct: 108 INRSLKTVTDTDAYQKTAEVAAATSD-----------TVKEKWNDMRNSSLFKSFESKLG 156
Query: 434 TAYTSVKTKLTNS 472
+A + K + S
Sbjct: 157 SALNNAKMAASTS 169
>sp|Q62393|TPD52_MOUSE Tumor protein D52 (mD52)
Length = 185
Score = 67.8 bits (164), Expect = 3e-11
Identities = 40/128 (31%), Positives = 67/128 (52%)
Frame = +2
Query: 110 DEDSLREQLSKTEEEIITLRQVLNVKLKLAQDLKRQLGITVINEMKGDIIHGINTIKESN 289
+++ LR +L+K EEEI TL QVL K K +LKR+LGI+ + E K +I G + +N
Sbjct: 35 EQEELRRELTKVEEEIQTLSQVLAAKEKHLAELKRKLGISSLQEFKQNIAKGWQDVTATN 94
Query: 290 TFKATTNVMKNVKDXXXXXXXXXXXXXXQKIGLLRNTNTFKSIEGKMGTAYTSVKTKLTN 469
+K T+ + +K+ ++N+ TFKS E K+ ++K+K+
Sbjct: 95 AYKKTSETLSQAGQKASAAFSSVGSVITKKLEDVKNSPTFKSFEEKV----ENLKSKVGG 150
Query: 470 SKSTNDDY 493
+K D+
Sbjct: 151 AKPAGGDF 158
>sp|P55327|TPD52_HUMAN Tumor protein D52 (N8 protein)
Length = 184
Score = 67.4 bits (163), Expect = 3e-11
Identities = 44/146 (30%), Positives = 75/146 (51%), Gaps = 2/146 (1%)
Frame = +2
Query: 62 EGE--ASLHSSDNTKDIIDEDSLREQLSKTEEEIITLRQVLNVKLKLAQDLKRQLGITVI 235
EGE A+ S+ T +++ LR +L+K EEEI TL QVL K K ++KR+LGI +
Sbjct: 17 EGEDVAATISATETLSEEEQEELRRELAKVEEEIQTLSQVLAAKEKHLAEIKRKLGINSL 76
Query: 236 NEMKGDIIHGINTIKESNTFKATTNVMKNVKDXXXXXXXXXXXXXXQKIGLLRNTNTFKS 415
E+K +I G + ++ +K T+ + +K+ ++N+ TFKS
Sbjct: 77 QELKQNIAKGWQDVTATSAYKKTSETLSQAGQKASAAFSSVGSVITKKLEDVKNSPTFKS 136
Query: 416 IEGKMGTAYTSVKTKLTNSKSTNDDY 493
E K+ ++K+K+ +K D+
Sbjct: 137 FEEKV----ENLKSKVGGTKPAGGDF 158
>sp|Q95212|TPD52_RABIT Tumor protein D52 (28 kDa calcium-dependent phosphoprotein) (pp28)
Length = 184
Score = 66.2 bits (160), Expect = 7e-11
Identities = 41/144 (28%), Positives = 73/144 (50%)
Frame = +2
Query: 62 EGEASLHSSDNTKDIIDEDSLREQLSKTEEEIITLRQVLNVKLKLAQDLKRQLGITVINE 241
E A+ S+ T +++ LR +L+K EEEI TL QVL + K ++KR+LGI + E
Sbjct: 19 EDAAATISATETLSEEEQEELRRELAKVEEEIQTLSQVLAAREKHLAEIKRKLGINSLQE 78
Query: 242 MKGDIIHGINTIKESNTFKATTNVMKNVKDXXXXXXXXXXXXXXQKIGLLRNTNTFKSIE 421
+K +I G + ++ +K T+ + +K+ ++N+ TFKS E
Sbjct: 79 LKQNIAKGWQDVTATSAYKKTSETLSQAGQKASAAFSSVGSVITKKLEDVKNSPTFKSFE 138
Query: 422 GKMGTAYTSVKTKLTNSKSTNDDY 493
K+ ++K+K+ +K D+
Sbjct: 139 EKV----ENLKSKVGGTKPAGGDF 158
>sp|O43399|TPD54_HUMAN Tumor protein D54 (hD54) (Tumor protein D52-like 2)
Length = 206
Score = 65.9 bits (159), Expect = 1e-10
Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 20/147 (13%)
Frame = +2
Query: 110 DEDSLREQLSKTEEEIITLRQVLNVKLKLAQDLKRQLGITVINEMKGDII---HGINT-- 274
+E+ LR +L+K EEEI+TLRQVL K + +LKR+LG++ + E+K ++ H +
Sbjct: 45 EEEELRAELTKVEEEIVTLRQVLAAKERHCGELKRRLGLSTLGELKQNLSRSWHDVQVSS 104
Query: 275 ---------------IKESNTFKATTNVMKNVKDXXXXXXXXXXXXXXQKIGLLRNTNTF 409
+ +S+ +K T + +K+G +RN+ TF
Sbjct: 105 AYVKTSEKLGEWNEKVTQSDLYKKTQETLSQAGQKTSAALSTVGSAISRKLGDMRNSATF 164
Query: 410 KSIEGKMGTAYTSVKTKLTNSKSTNDD 490
KS E ++GT +K+K+ + D
Sbjct: 165 KSFEDRVGT----IKSKVVGDRENGSD 187
>sp|Q5RCT1|TPD54_PONPY Tumor protein D54 (Tumor protein D52-like 2)
Length = 206
Score = 63.9 bits (154), Expect = 4e-10
Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 20/147 (13%)
Frame = +2
Query: 110 DEDSLREQLSKTEEEIITLRQVLNVKLKLAQDLKRQLGITVINEMKGDIIHGINTIKESN 289
+E+ LR +L+K EEEI+TLRQVL K + +LKR+LG++ + +K ++ + ++ SN
Sbjct: 45 EEEELRAELTKVEEEIVTLRQVLAAKERHCGELKRRLGLSTLGGLKQNLSRSWHDVQVSN 104
Query: 290 TF--------------------KATTNVMKNVKDXXXXXXXXXXXXXXQKIGLLRNTNTF 409
+ K T + +K+G +RN+ TF
Sbjct: 105 AYVKTSEKLGEWNEKVTQSDLYKKTQETLSQAGQKTSAALSTMGSAISRKLGDMRNSATF 164
Query: 410 KSIEGKMGTAYTSVKTKLTNSKSTNDD 490
KS E ++GT +K+K+ + D
Sbjct: 165 KSFEDRVGT----IKSKVVGDRENGSD 187
>sp|Q9I8F4|TPD53_CHICK Tumor protein D53 homolog (Tumor protein D52-like 1)
Length = 210
Score = 63.2 bits (152), Expect = 6e-10
Identities = 39/146 (26%), Positives = 72/146 (49%), Gaps = 18/146 (12%)
Frame = +2
Query: 110 DEDSLREQLSKTEEEIITLRQVLNVKLKLAQDLKRQLGITVINEMKGDIIHGINTIKESN 289
+++ L+ +L+K E+EI TLRQVL K K ++K++LG++++NE+K + + ++ ++
Sbjct: 35 EKEELKAELAKLEDEISTLRQVLAAKEKHLIEIKQKLGMSLMNELKQNFSKSWHDMQTTS 94
Query: 290 TFKATTNVMKNVKDXXXXXXXXXXXXXXQKIG------------------LLRNTNTFKS 415
+K T + + +K G +RN+ TFKS
Sbjct: 95 AYKKTHETLSHAGQKATAAISNVGTAISKKFGDMRSHSISYSIRHSISMPAMRNSPTFKS 154
Query: 416 IEGKMGTAYTSVKTKLTNSKSTNDDY 493
E K+ T TS+KTK+ + T +
Sbjct: 155 FEEKVETTVTSLKTKVGGTSHTGGSF 180
>sp|Q6PCT3|TPD54_RAT Tumor protein D54 (Tumor protein D52-like 2)
Length = 220
Score = 59.7 bits (143), Expect = 7e-09
Identities = 44/187 (23%), Positives = 83/187 (44%), Gaps = 34/187 (18%)
Frame = +2
Query: 107 IDEDSLREQLSKTEEEIITLRQVLNVKLKLAQDLKRQLGITVINEMKGDIIHGINTIK-- 280
++E+ LR +L+K EEEI+TLRQVL K + +LKR+LG++ + E+K ++ + ++
Sbjct: 44 VEEEELRAELAKVEEEIVTLRQVLAAKERHCGELKRRLGLSTLGELKQNLSRSWHDVQGS 103
Query: 281 ------------------ESNTFKATTNVMKNVKDXXXXXXXXXXXXXXQKIG------- 385
+S+ +K T + +K+G
Sbjct: 104 TAYVKTSEKLGEWNEKVTQSDLYKKTQETLSQAGQKTSAALSTMGSAISRKLGDMSSYSI 163
Query: 386 -------LLRNTNTFKSIEGKMGTAYTSVKTKLTNSKSTNDDYVIDENEISHNNGLDDNS 544
++RN+ TFKS E ++GT +K+K+ + D + + G D +
Sbjct: 164 RHSISMPVMRNSATFKSFEDRVGT----IKSKVVGGRENGSD------TLPSSPGSGDQT 213
Query: 545 KPNNS*F 565
P+++ F
Sbjct: 214 LPDHAPF 220
>sp|Q16890|TPD53_HUMAN Tumor protein D53 (hD53) (Tumor protein D52-like 1)
Length = 204
Score = 59.3 bits (142), Expect = 9e-09
Identities = 35/131 (26%), Positives = 67/131 (51%), Gaps = 13/131 (9%)
Frame = +2
Query: 110 DEDSLREQLSKTEEEIITLRQVLNVKLKLAQDLKRQLGITVINEMKGDIIHGINTIKESN 289
+++ L+ +L + E+EI TLRQVL+ K + ++K++LG+ ++NE+K + + ++ +
Sbjct: 35 EKEELKAELVQLEDEITTLRQVLSAKERHLVEIKQKLGMNLMNELKQNFSKSWHDMQTTT 94
Query: 290 TFKATTNVMKNVKDXXXXXXXXXXXXXXQKIG-------------LLRNTNTFKSIEGKM 430
+K T + + +K G +RN+ TFKS E ++
Sbjct: 95 AYKKTHETLSHAGQKATAAFSNVGTAISKKFGDMSYSIRHSISMPAMRNSPTFKSFEERV 154
Query: 431 GTAYTSVKTKL 463
T TS+KTK+
Sbjct: 155 ETTVTSLKTKV 165
>sp|O54818|TPD53_MOUSE Tumor protein D53 (mD53) (Tumor protein D52-like 1)
Length = 204
Score = 59.3 bits (142), Expect = 9e-09
Identities = 36/150 (24%), Positives = 72/150 (48%), Gaps = 13/150 (8%)
Frame = +2
Query: 110 DEDSLREQLSKTEEEIITLRQVLNVKLKLAQDLKRQLGITVINEMKGDIIHGINTIKESN 289
+++ L+ +L + E+EI TLRQVL+ K + ++K++LG+ ++NE+K + + ++ +
Sbjct: 35 EKEELKAELIQLEDEITTLRQVLSAKERHLVEIKQKLGMNLMNELKQNFSRSWHDMQTTT 94
Query: 290 TFKATTNVMKNVKDXXXXXXXXXXXXXXQKIG-------------LLRNTNTFKSIEGKM 430
+K T + + +K G +RN++TFKS E ++
Sbjct: 95 AYKKTHETLSHAGQKATAAFNNVGTAISKKFGDMRYSIRHSISMPAMRNSSTFKSFEERV 154
Query: 431 GTAYTSVKTKLTNSKSTNDDYVIDENEISH 520
T S+KTK+ + + N +H
Sbjct: 155 ETTVASLKTKVGGTNHGGGSFEEVLNSTAH 184
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,963,963
Number of Sequences: 369166
Number of extensions: 1123627
Number of successful extensions: 3991
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3896
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5830600200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)