Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_B24
(245 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q5E9A1|NACA_BOVIN Nascent polypeptide-associated complex... 40 0.002
sp|Q13765|NACA_HUMAN Nascent polypeptide-associated complex... 40 0.002
sp|Q60817|NACA_MOUSE Nascent polypeptide-associated complex... 40 0.002
sp|Q68F90|NACA_XENTR Nascent polypeptide-associated complex... 40 0.002
sp|Q8JIU7|NACA_BRARE Nascent polypeptide-associated complex... 40 0.002
sp|Q8AWF2|NACA_ORENI Nascent polypeptide-associated complex... 40 0.002
sp|P70670|NACAM_MOUSE Nascent polypeptide-associated comple... 40 0.002
sp|Q6IP73|NACA_XENLA Nascent polypeptide-associated complex... 38 0.008
sp|Q6QN10|NACA_CHILA Nascent polypeptide-associated complex... 37 0.011
sp|Q5R9I9|NACA_PONPY Nascent polypeptide-associated complex... 37 0.014
>sp|Q5E9A1|NACA_BOVIN Nascent polypeptide-associated complex alpha subunit (NAC-alpha)
(Alpha-NAC)
Length = 215
Score = 39.7 bits (91), Expect = 0.002
Identities = 21/40 (52%), Positives = 25/40 (62%)
Frame = +3
Query: 60 TIQEESDGEEEDATGLCENDITLIMYHAQVSRIKPSELLK 179
T+QEES+ EE D TG+ DI L+M A VSR K LK
Sbjct: 161 TVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALK 200
>sp|Q13765|NACA_HUMAN Nascent polypeptide-associated complex alpha subunit (NAC-alpha)
(Alpha-NAC) (Hom s 2.02)
Length = 215
Score = 39.7 bits (91), Expect = 0.002
Identities = 21/40 (52%), Positives = 25/40 (62%)
Frame = +3
Query: 60 TIQEESDGEEEDATGLCENDITLIMYHAQVSRIKPSELLK 179
T+QEES+ EE D TG+ DI L+M A VSR K LK
Sbjct: 161 TVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALK 200
>sp|Q60817|NACA_MOUSE Nascent polypeptide-associated complex alpha subunit (Alpha-NAC)
(Alpha-NAC/1.9.2)
Length = 215
Score = 39.7 bits (91), Expect = 0.002
Identities = 21/40 (52%), Positives = 25/40 (62%)
Frame = +3
Query: 60 TIQEESDGEEEDATGLCENDITLIMYHAQVSRIKPSELLK 179
T+QEES+ EE D TG+ DI L+M A VSR K LK
Sbjct: 161 TVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALK 200
>sp|Q68F90|NACA_XENTR Nascent polypeptide-associated complex alpha subunit (NAC-alpha)
(Alpha-NAC)
Length = 214
Score = 39.7 bits (91), Expect = 0.002
Identities = 21/40 (52%), Positives = 25/40 (62%)
Frame = +3
Query: 60 TIQEESDGEEEDATGLCENDITLIMYHAQVSRIKPSELLK 179
T+QEES+ EE D TG+ DI L+M A VSR K LK
Sbjct: 160 TVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALK 199
>sp|Q8JIU7|NACA_BRARE Nascent polypeptide-associated complex alpha subunit (NAC-alpha)
(Alpha-NAC)
Length = 215
Score = 39.7 bits (91), Expect = 0.002
Identities = 21/40 (52%), Positives = 25/40 (62%)
Frame = +3
Query: 60 TIQEESDGEEEDATGLCENDITLIMYHAQVSRIKPSELLK 179
T+QEES+ EE D TG+ DI L+M A VSR K LK
Sbjct: 161 TVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALK 200
>sp|Q8AWF2|NACA_ORENI Nascent polypeptide-associated complex alpha subunit (NAC-alpha)
(Alpha-NAC)
Length = 215
Score = 39.7 bits (91), Expect = 0.002
Identities = 21/40 (52%), Positives = 25/40 (62%)
Frame = +3
Query: 60 TIQEESDGEEEDATGLCENDITLIMYHAQVSRIKPSELLK 179
T+QEES+ EE D TG+ DI L+M A VSR K LK
Sbjct: 161 TVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALK 200
>sp|P70670|NACAM_MOUSE Nascent polypeptide-associated complex alpha subunit, muscle-specific
form (Alpha-NAC, muscle-specific form)
Length = 2187
Score = 39.7 bits (91), Expect = 0.002
Identities = 21/40 (52%), Positives = 25/40 (62%)
Frame = +3
Query: 60 TIQEESDGEEEDATGLCENDITLIMYHAQVSRIKPSELLK 179
T+QEES+ EE D TG+ DI L+M A VSR K LK
Sbjct: 2133 TVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALK 2172
>sp|Q6IP73|NACA_XENLA Nascent polypeptide-associated complex alpha subunit (NAC-alpha)
(Alpha-NAC)
Length = 213
Score = 37.7 bits (86), Expect = 0.008
Identities = 20/40 (50%), Positives = 24/40 (60%)
Frame = +3
Query: 60 TIQEESDGEEEDATGLCENDITLIMYHAQVSRIKPSELLK 179
T+QEES+ EE D G+ DI L+M A VSR K LK
Sbjct: 159 TVQEESEEEEVDEAGVEVKDIELVMSQANVSRAKAVRALK 198
>sp|Q6QN10|NACA_CHILA Nascent polypeptide-associated complex alpha subunit (NAC-alpha)
(Alpha-NAC)
Length = 215
Score = 37.4 bits (85), Expect = 0.011
Identities = 20/40 (50%), Positives = 24/40 (60%)
Frame = +3
Query: 60 TIQEESDGEEEDATGLCENDITLIMYHAQVSRIKPSELLK 179
T+QEES+ EE D TG+ DI +M A VSR K LK
Sbjct: 161 TVQEESEEEEVDETGVEVKDIEWVMSQANVSRAKAVRALK 200
>sp|Q5R9I9|NACA_PONPY Nascent polypeptide-associated complex alpha subunit (NAC-alpha)
(Alpha-NAC)
Length = 215
Score = 37.0 bits (84), Expect = 0.014
Identities = 20/40 (50%), Positives = 24/40 (60%)
Frame = +3
Query: 60 TIQEESDGEEEDATGLCENDITLIMYHAQVSRIKPSELLK 179
T+QEES+ EE D T + DI L+M A VSR K LK
Sbjct: 161 TVQEESEEEEVDETDVEVKDIELVMSQANVSRAKAVRALK 200
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,640,817
Number of Sequences: 369166
Number of extensions: 299539
Number of successful extensions: 965
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 68,354,980
effective HSP length: 52
effective length of database: 58,748,760
effective search space used: 1703714040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)