Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_B22
(166 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P13905|EF1A_ARATH Elongation factor 1-alpha (EF-1-alpha) 52 3e-07
sp|P25698|EF1A_SOYBN Elongation factor 1-alpha (EF-1-alpha) 52 3e-07
sp|P43643|EF1A_TOBAC Elongation factor 1-alpha (EF-1-alpha)... 52 3e-07
sp|O64937|EF1A_ORYSA Elongation factor 1-alpha (EF-1-alpha) 52 3e-07
sp|Q41803|EF1A_MAIZE Elongation factor 1-alpha (EF-1-alpha) 51 7e-07
sp|P27592|EF1A_ONCVO Elongation factor 1-alpha (EF-1-alpha) 51 7e-07
sp|P41745|EF1A_ARXAD Elongation factor 1-alpha (EF-1-alpha) 51 7e-07
sp|Q41011|EF1A_PEA Elongation factor 1-alpha (EF-1-alpha) 51 7e-07
sp|P17508|EF1A3_XENLA Elongation factor 1-alpha, oocyte for... 51 7e-07
sp|O24534|EF1A_VICFA Elongation factor 1-alpha (EF-1-alpha) 51 7e-07
>sp|P13905|EF1A_ARATH Elongation factor 1-alpha (EF-1-alpha)
Length = 449
Score = 52.4 bits (124), Expect = 3e-07
Identities = 24/25 (96%), Positives = 25/25 (100%)
Frame = +2
Query: 2 TFSEYPPLGRFAVRDMKQTVAVGVI 76
TFSEYPPLGRFAVRDM+QTVAVGVI
Sbjct: 402 TFSEYPPLGRFAVRDMRQTVAVGVI 426
>sp|P25698|EF1A_SOYBN Elongation factor 1-alpha (EF-1-alpha)
Length = 447
Score = 52.4 bits (124), Expect = 3e-07
Identities = 24/25 (96%), Positives = 25/25 (100%)
Frame = +2
Query: 2 TFSEYPPLGRFAVRDMKQTVAVGVI 76
TFSEYPPLGRFAVRDM+QTVAVGVI
Sbjct: 402 TFSEYPPLGRFAVRDMRQTVAVGVI 426
>sp|P43643|EF1A_TOBAC Elongation factor 1-alpha (EF-1-alpha) (Vitronectin-like adhesion
protein 1) (PVN1)
Length = 447
Score = 52.4 bits (124), Expect = 3e-07
Identities = 24/25 (96%), Positives = 25/25 (100%)
Frame = +2
Query: 2 TFSEYPPLGRFAVRDMKQTVAVGVI 76
TFSEYPPLGRFAVRDM+QTVAVGVI
Sbjct: 402 TFSEYPPLGRFAVRDMRQTVAVGVI 426
>sp|O64937|EF1A_ORYSA Elongation factor 1-alpha (EF-1-alpha)
Length = 447
Score = 52.4 bits (124), Expect = 3e-07
Identities = 24/25 (96%), Positives = 25/25 (100%)
Frame = +2
Query: 2 TFSEYPPLGRFAVRDMKQTVAVGVI 76
TFSEYPPLGRFAVRDM+QTVAVGVI
Sbjct: 402 TFSEYPPLGRFAVRDMRQTVAVGVI 426
>sp|Q41803|EF1A_MAIZE Elongation factor 1-alpha (EF-1-alpha)
Length = 447
Score = 51.2 bits (121), Expect = 7e-07
Identities = 23/25 (92%), Positives = 25/25 (100%)
Frame = +2
Query: 2 TFSEYPPLGRFAVRDMKQTVAVGVI 76
TFS+YPPLGRFAVRDM+QTVAVGVI
Sbjct: 402 TFSQYPPLGRFAVRDMRQTVAVGVI 426
>sp|P27592|EF1A_ONCVO Elongation factor 1-alpha (EF-1-alpha)
Length = 464
Score = 51.2 bits (121), Expect = 7e-07
Identities = 23/25 (92%), Positives = 25/25 (100%)
Frame = +2
Query: 2 TFSEYPPLGRFAVRDMKQTVAVGVI 76
TF+EYPPLGRFAVRDM+QTVAVGVI
Sbjct: 414 TFTEYPPLGRFAVRDMRQTVAVGVI 438
>sp|P41745|EF1A_ARXAD Elongation factor 1-alpha (EF-1-alpha)
Length = 459
Score = 51.2 bits (121), Expect = 7e-07
Identities = 23/25 (92%), Positives = 25/25 (100%)
Frame = +2
Query: 2 TFSEYPPLGRFAVRDMKQTVAVGVI 76
TF+EYPPLGRFAVRDM+QTVAVGVI
Sbjct: 412 TFTEYPPLGRFAVRDMRQTVAVGVI 436
>sp|Q41011|EF1A_PEA Elongation factor 1-alpha (EF-1-alpha)
Length = 447
Score = 51.2 bits (121), Expect = 7e-07
Identities = 23/25 (92%), Positives = 25/25 (100%)
Frame = +2
Query: 2 TFSEYPPLGRFAVRDMKQTVAVGVI 76
TF+EYPPLGRFAVRDM+QTVAVGVI
Sbjct: 402 TFAEYPPLGRFAVRDMRQTVAVGVI 426
>sp|P17508|EF1A3_XENLA Elongation factor 1-alpha, oocyte form (EF-1-alpha-O1) (EF-1AO1)
Length = 461
Score = 51.2 bits (121), Expect = 7e-07
Identities = 23/25 (92%), Positives = 25/25 (100%)
Frame = +2
Query: 2 TFSEYPPLGRFAVRDMKQTVAVGVI 76
TFS+YPPLGRFAVRDM+QTVAVGVI
Sbjct: 414 TFSDYPPLGRFAVRDMRQTVAVGVI 438
>sp|O24534|EF1A_VICFA Elongation factor 1-alpha (EF-1-alpha)
Length = 447
Score = 51.2 bits (121), Expect = 7e-07
Identities = 23/25 (92%), Positives = 25/25 (100%)
Frame = +2
Query: 2 TFSEYPPLGRFAVRDMKQTVAVGVI 76
TF+EYPPLGRFAVRDM+QTVAVGVI
Sbjct: 402 TFAEYPPLGRFAVRDMRQTVAVGVI 426
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,517,217
Number of Sequences: 369166
Number of extensions: 126807
Number of successful extensions: 478
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 68,354,980
effective HSP length: 27
effective length of database: 63,367,135
effective search space used: 1710912645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)