Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_B17
(364 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P54675|PI3K3_DICDI Phosphatidylinositol 3-kinase 3 (PI3-... 28 8.7
sp|O94644|YBV2_SCHPO Hypothetical protein C21.02 in chromos... 28 8.7
>sp|P54675|PI3K3_DICDI Phosphatidylinositol 3-kinase 3 (PI3-kinase) (PtdIns-3-kinase) (PI3K)
Length = 1585
Score = 27.7 bits (60), Expect = 8.7
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = +2
Query: 182 VLTIHFSWILR*DNDRLCSIQRQRIRSKAVIFYAPLMLINVFDKTI 319
VL F W LR D D +R R+ S + YAP L+ F + I
Sbjct: 1094 VLGHPFFWHLRADIDNQEVCERFRVLSSGFLRYAPTQLMESFKREI 1139
>sp|O94644|YBV2_SCHPO Hypothetical protein C21.02 in chromosome II
Length = 511
Score = 27.7 bits (60), Expect = 8.7
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = -3
Query: 272 SQLYFEFFAFVWNINGHYLIVRSN*SGLSTHAL--AMNNILSPSCPPIIAFQVNFFHLSI 99
+Q+ F VW +NG + R++ G S +AL M N +PS I A ++N H S
Sbjct: 282 AQICFFLPKSVWQVNGLTSLFRASFHGYSMYALERKMCNYHNPSILLIKAKKINANHKSS 341
Query: 98 S 96
S
Sbjct: 342 S 342
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,624,337
Number of Sequences: 369166
Number of extensions: 838273
Number of successful extensions: 1436
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1436
length of database: 68,354,980
effective HSP length: 87
effective length of database: 52,283,035
effective search space used: 1725340155
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)