Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_B08
(701 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q91V37|VATO_MOUSE Vacuolar ATP synthase 21 kDa proteolip... 229 5e-60
sp|Q99437|VATO_HUMAN Vacuolar ATP synthase 21 kDa proteolip... 229 7e-60
sp|P23968|VATO_YEAST Vacuolar ATP synthase 22 kDa proteolip... 177 3e-44
sp|O14046|VATO_SCHPO Probable vacuolar ATP synthase 20 kDa ... 174 2e-43
sp|P59229|VATL4_ARATH Vacuolar ATP synthase 16 kDa proteoli... 75 1e-13
sp|P68161|VATL_MESCR Vacuolar ATP synthase 16 kDa proteolip... 75 2e-13
sp|P59228|VATL2_ARATH Vacuolar ATP synthase 16 kDa proteoli... 75 2e-13
sp|P59227|VATL1_ARATH Vacuolar ATP synthase 16 kDa proteoli... 75 2e-13
sp|Q43434|VATL_GOSHI Vacuolar ATP synthase 16 kDa proteolip... 75 2e-13
sp|O24011|VATL_LYCES Vacuolar ATP synthase 16 kDa proteolip... 75 2e-13
>sp|Q91V37|VATO_MOUSE Vacuolar ATP synthase 21 kDa proteolipid subunit (23-kDa subunit of
V-ATPase)
Length = 205
Score = 229 bits (584), Expect = 5e-60
Identities = 122/192 (63%), Positives = 143/192 (74%)
Frame = +2
Query: 50 FLSIIGLVGLYYCLSDQGYRFDIGWFLQETSPYLWANIGIGLCISLSVLGAALGIYTTGS 229
F + + +VG+ Y + D G+RFD+ WFL ETSP++W+N+GIGL ISLSV+GAA GIY TGS
Sbjct: 15 FWACMVVVGICYTIFDLGFRFDVAWFLTETSPFMWSNLGIGLAISLSVVGAAWGIYITGS 74
Query: 230 SILGAGVKTPRIRTKNLVSIIFCEAVAIYGIIMAIVISQNIKSFDSKIASFRVLQINHEG 409
SI+G GVK PRI+TKNLVSIIFCEAVAIYGIIMAIVIS + F S + N+
Sbjct: 75 SIIGGGVKAPRIKTKNLVSIIFCEAVAIYGIIMAIVISNMAEPF-SATEPKAIGHRNYHA 133
Query: 410 GFRMFGSGLTVGLSNLXXXXXXXXXXXXAALADSANASLFVKILIVEIFGSAIGLFGVIV 589
G+ MFG+GLTVGLSNL AALAD+ N SLFVKILIVEIFGSAIGLFGVIV
Sbjct: 134 GYSMFGAGLTVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVEIFGSAIGLFGVIV 193
Query: 590 GILQVAGTKMGD 625
ILQ + KMGD
Sbjct: 194 AILQTSRVKMGD 205
>sp|Q99437|VATO_HUMAN Vacuolar ATP synthase 21 kDa proteolipid subunit (HATPL)
Length = 205
Score = 229 bits (583), Expect = 7e-60
Identities = 123/188 (65%), Positives = 140/188 (74%), Gaps = 3/188 (1%)
Frame = +2
Query: 71 VGLYYCLSDQGYRFDIGWFLQETSPYLWANIGIGLCISLSVLGAALGIYTTGSSILGAGV 250
VG+ Y + D G+RFD+ WFL ETSP++W+N+GIGL ISLSV+GAA GIY TGSSI+G GV
Sbjct: 22 VGVCYTIFDLGFRFDVAWFLTETSPFMWSNLGIGLAISLSVVGAAWGIYITGSSIIGGGV 81
Query: 251 KTPRIRTKNLVSIIFCEAVAIYGIIMAIVISQNIKSF---DSKIASFRVLQINHEGGFRM 421
K PRI+TKNLVSIIFCEAVAIYGIIMAIVIS + F D K R N+ G+ M
Sbjct: 82 KAPRIKTKNLVSIIFCEAVAIYGIIMAIVISNMAEPFSATDPKAIGHR----NYHAGYSM 137
Query: 422 FGSGLTVGLSNLXXXXXXXXXXXXAALADSANASLFVKILIVEIFGSAIGLFGVIVGILQ 601
FG+GLTVGLSNL AALAD+ N SLFVKILIVEIFGSAIGLFGVIV ILQ
Sbjct: 138 FGAGLTVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVEIFGSAIGLFGVIVAILQ 197
Query: 602 VAGTKMGD 625
+ KMGD
Sbjct: 198 TSRVKMGD 205
>sp|P23968|VATO_YEAST Vacuolar ATP synthase 22 kDa proteolipid subunit
Length = 213
Score = 177 bits (448), Expect = 3e-44
Identities = 92/185 (49%), Positives = 125/185 (67%)
Frame = +2
Query: 44 YTFLSIIGLVGLYYCLSDQGYRFDIGWFLQETSPYLWANIGIGLCISLSVLGAALGIYTT 223
Y L ++ + GLY + G + G FL TSPY+WAN+GI LC+ LSV+GAA GI+ T
Sbjct: 23 YLVLIVVIVYGLYKLFTGHGSDINFGKFLLRTSPYMWANLGIALCVGLSVVGAAWGIFIT 82
Query: 224 GSSILGAGVKTPRIRTKNLVSIIFCEAVAIYGIIMAIVISQNIKSFDSKIASFRVLQINH 403
GSS++GAGV+ PRI TKNL+SIIFCE VAIYG+I+AIV S + A + N
Sbjct: 83 GSSMIGAGVRAPRITTKNLISIIFCEVVAIYGLIIAIVFSSKL---TVATAENMYSKSNL 139
Query: 404 EGGFRMFGSGLTVGLSNLXXXXXXXXXXXXAALADSANASLFVKILIVEIFGSAIGLFGV 583
G+ +F +G+TVG SNL AA++D+A+++LFVKIL++EIFGS +GL G+
Sbjct: 140 YTGYSLFWAGITVGASNLICGIAVGITGATAAISDAADSALFVKILVIEIFGSILGLLGL 199
Query: 584 IVGIL 598
IVG+L
Sbjct: 200 IVGLL 204
>sp|O14046|VATO_SCHPO Probable vacuolar ATP synthase 20 kDa proteolipid subunit
Length = 199
Score = 174 bits (442), Expect = 2e-43
Identities = 96/184 (52%), Positives = 122/184 (66%)
Frame = +2
Query: 47 TFLSIIGLVGLYYCLSDQGYRFDIGWFLQETSPYLWANIGIGLCISLSVLGAALGIYTTG 226
T +SII VGLY + G FD G FL +TSPY W +GI C++ ++GAA GI+ G
Sbjct: 12 TVMSII--VGLYMLFHNSGESFDFGSFLLDTSPYTWGLLGIASCVAFGIIGAAWGIFICG 69
Query: 227 SSILGAGVKTPRIRTKNLVSIIFCEAVAIYGIIMAIVISQNIKSFDSKIASFRVLQINHE 406
+SILG VK PRI+TKNL+SIIFCE VAIY +I+AIV S I D A F + ++
Sbjct: 70 TSILGGAVKAPRIKTKNLISIIFCEVVAIYSLIIAIVFSAKIN--DINPAGF-YTKSHYY 126
Query: 407 GGFRMFGSGLTVGLSNLXXXXXXXXXXXXAALADSANASLFVKILIVEIFGSAIGLFGVI 586
GF +F G+TVGL NL AALAD+ +ASLFVK+L+VEIFGS +GLFG+I
Sbjct: 127 TGFALFWGGITVGLCNLICGVCVGITGSSAALADAQDASLFVKVLVVEIFGSVLGLFGLI 186
Query: 587 VGIL 598
VG+L
Sbjct: 187 VGLL 190
Score = 34.3 bits (77), Expect = 0.33
Identities = 22/70 (31%), Positives = 34/70 (48%)
Frame = +2
Query: 152 WANIGIGLCISLSVLGAALGIYTTGSSILGAGVKTPRIRTKNLVSIIFCEAVAIYGIIMA 331
W I +GLC + G +GI TGSS A + + K LV IF + ++G+I+
Sbjct: 133 WGGITVGLCNL--ICGVCVGI--TGSSAALADAQDASLFVKVLVVEIFGSVLGLFGLIVG 188
Query: 332 IVISQNIKSF 361
++I F
Sbjct: 189 LLIGGKASDF 198
>sp|P59229|VATL4_ARATH Vacuolar ATP synthase 16 kDa proteolipid subunit 4 (V-ATPase 16 kDa
proteolipid subunit 4)
Length = 166
Score = 75.5 bits (184), Expect = 1e-13
Identities = 46/160 (28%), Positives = 80/160 (50%)
Frame = +2
Query: 119 GWFLQETSPYLWANIGIGLCISLSVLGAALGIYTTGSSILGAGVKTPRIRTKNLVSIIFC 298
G+ ET+P+ + +G + S +GAA G +G + GV P + K++V ++
Sbjct: 5 GFSGDETAPF-FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMA 63
Query: 299 EAVAIYGIIMAIVISQNIKSFDSKIASFRVLQINHEGGFRMFGSGLTVGLSNLXXXXXXX 478
+ IYG+I+A++IS I + K S+ + G+ SGL GL+ L
Sbjct: 64 GVLGIYGLIIAVIISTGI---NPKAKSYYLFD-----GYAHLSSGLACGLAGLSAGMAIG 115
Query: 479 XXXXXAALADSANASLFVKILIVEIFGSAIGLFGVIVGIL 598
A++ LFV ++++ IF A+ L+G+IVGI+
Sbjct: 116 IVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGII 155
Score = 43.1 bits (100), Expect = 7e-04
Identities = 20/64 (31%), Positives = 39/64 (60%)
Frame = +2
Query: 152 WANIGIGLCISLSVLGAALGIYTTGSSILGAGVKTPRIRTKNLVSIIFCEAVAIYGIIMA 331
+A++ GL L+ L A + I G + + A + P++ ++ +IF EA+A+YG+I+
Sbjct: 94 YAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVG 153
Query: 332 IVIS 343
I++S
Sbjct: 154 IILS 157
>sp|P68161|VATL_MESCR Vacuolar ATP synthase 16 kDa proteolipid subunit
sp|P68162|VATL_BETVU Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 165
Score = 75.1 bits (183), Expect = 2e-13
Identities = 45/155 (29%), Positives = 78/155 (50%)
Frame = +2
Query: 134 ETSPYLWANIGIGLCISLSVLGAALGIYTTGSSILGAGVKTPRIRTKNLVSIIFCEAVAI 313
ET+P+ + +G + S +GAA G +G + GV P + K++V ++ + I
Sbjct: 9 ETAPF-FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGI 67
Query: 314 YGIIMAIVISQNIKSFDSKIASFRVLQINHEGGFRMFGSGLTVGLSNLXXXXXXXXXXXX 493
YG+I+A++IS I + K S+ + G+ SGL GL+ L
Sbjct: 68 YGLIIAVIISTGI---NPKAKSYYLFD-----GYAHLSSGLACGLAGLSAGMAIGIVGDA 119
Query: 494 AALADSANASLFVKILIVEIFGSAIGLFGVIVGIL 598
A++ LFV ++++ IF A+ L+G+IVGI+
Sbjct: 120 GVRANAQQPKLFVGMILILIFAEALALYGLIVGII 154
Score = 43.1 bits (100), Expect = 7e-04
Identities = 20/64 (31%), Positives = 39/64 (60%)
Frame = +2
Query: 152 WANIGIGLCISLSVLGAALGIYTTGSSILGAGVKTPRIRTKNLVSIIFCEAVAIYGIIMA 331
+A++ GL L+ L A + I G + + A + P++ ++ +IF EA+A+YG+I+
Sbjct: 93 YAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVG 152
Query: 332 IVIS 343
I++S
Sbjct: 153 IILS 156
>sp|P59228|VATL2_ARATH Vacuolar ATP synthase 16 kDa proteolipid subunit 2 (V-ATPase 16 kDa
proteolipid subunit 2)
Length = 165
Score = 75.1 bits (183), Expect = 2e-13
Identities = 45/155 (29%), Positives = 78/155 (50%)
Frame = +2
Query: 134 ETSPYLWANIGIGLCISLSVLGAALGIYTTGSSILGAGVKTPRIRTKNLVSIIFCEAVAI 313
ET+P+ + +G + S +GAA G +G + GV P + K++V ++ + I
Sbjct: 9 ETAPF-FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGI 67
Query: 314 YGIIMAIVISQNIKSFDSKIASFRVLQINHEGGFRMFGSGLTVGLSNLXXXXXXXXXXXX 493
YG+I+A++IS I + K S+ + G+ SGL GL+ L
Sbjct: 68 YGLIIAVIISTGI---NPKAKSYYLFD-----GYAHLSSGLACGLAGLSAGMAIGIVGDA 119
Query: 494 AALADSANASLFVKILIVEIFGSAIGLFGVIVGIL 598
A++ LFV ++++ IF A+ L+G+IVGI+
Sbjct: 120 GVRANAQQPKLFVGMILILIFAEALALYGLIVGII 154
Score = 43.1 bits (100), Expect = 7e-04
Identities = 20/64 (31%), Positives = 39/64 (60%)
Frame = +2
Query: 152 WANIGIGLCISLSVLGAALGIYTTGSSILGAGVKTPRIRTKNLVSIIFCEAVAIYGIIMA 331
+A++ GL L+ L A + I G + + A + P++ ++ +IF EA+A+YG+I+
Sbjct: 93 YAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVG 152
Query: 332 IVIS 343
I++S
Sbjct: 153 IILS 156
>sp|P59227|VATL1_ARATH Vacuolar ATP synthase 16 kDa proteolipid subunit 1/3/5 (V-ATPase 16
kDa proteolipid subunit 1/3/5)
Length = 164
Score = 75.1 bits (183), Expect = 2e-13
Identities = 45/155 (29%), Positives = 78/155 (50%)
Frame = +2
Query: 134 ETSPYLWANIGIGLCISLSVLGAALGIYTTGSSILGAGVKTPRIRTKNLVSIIFCEAVAI 313
ET+P+ + +G + S +GAA G +G + GV P + K++V ++ + I
Sbjct: 8 ETAPF-FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGI 66
Query: 314 YGIIMAIVISQNIKSFDSKIASFRVLQINHEGGFRMFGSGLTVGLSNLXXXXXXXXXXXX 493
YG+I+A++IS I + K S+ + G+ SGL GL+ L
Sbjct: 67 YGLIIAVIISTGI---NPKAKSYYLFD-----GYAHLSSGLACGLAGLSAGMAIGIVGDA 118
Query: 494 AALADSANASLFVKILIVEIFGSAIGLFGVIVGIL 598
A++ LFV ++++ IF A+ L+G+IVGI+
Sbjct: 119 GVRANAQQPKLFVGMILILIFAEALALYGLIVGII 153
Score = 43.1 bits (100), Expect = 7e-04
Identities = 20/64 (31%), Positives = 39/64 (60%)
Frame = +2
Query: 152 WANIGIGLCISLSVLGAALGIYTTGSSILGAGVKTPRIRTKNLVSIIFCEAVAIYGIIMA 331
+A++ GL L+ L A + I G + + A + P++ ++ +IF EA+A+YG+I+
Sbjct: 92 YAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVG 151
Query: 332 IVIS 343
I++S
Sbjct: 152 IILS 155
>sp|Q43434|VATL_GOSHI Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 165
Score = 75.1 bits (183), Expect = 2e-13
Identities = 45/155 (29%), Positives = 78/155 (50%)
Frame = +2
Query: 134 ETSPYLWANIGIGLCISLSVLGAALGIYTTGSSILGAGVKTPRIRTKNLVSIIFCEAVAI 313
ET+P+ + +G + S +GAA G +G + GV P + K++V ++ + I
Sbjct: 9 ETAPF-FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGI 67
Query: 314 YGIIMAIVISQNIKSFDSKIASFRVLQINHEGGFRMFGSGLTVGLSNLXXXXXXXXXXXX 493
YG+I+A++IS I + K S+ + G+ SGL GL+ L
Sbjct: 68 YGLIIAVIISTGI---NPKAKSYYLFD-----GYAHLSSGLACGLAGLSAGMAIGIVGDA 119
Query: 494 AALADSANASLFVKILIVEIFGSAIGLFGVIVGIL 598
A++ LFV ++++ IF A+ L+G+IVGI+
Sbjct: 120 GVRANAQQPKLFVGMILILIFAEALALYGLIVGII 154
Score = 43.1 bits (100), Expect = 7e-04
Identities = 20/64 (31%), Positives = 39/64 (60%)
Frame = +2
Query: 152 WANIGIGLCISLSVLGAALGIYTTGSSILGAGVKTPRIRTKNLVSIIFCEAVAIYGIIMA 331
+A++ GL L+ L A + I G + + A + P++ ++ +IF EA+A+YG+I+
Sbjct: 93 YAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVG 152
Query: 332 IVIS 343
I++S
Sbjct: 153 IILS 156
>sp|O24011|VATL_LYCES Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 164
Score = 75.1 bits (183), Expect = 2e-13
Identities = 45/155 (29%), Positives = 78/155 (50%)
Frame = +2
Query: 134 ETSPYLWANIGIGLCISLSVLGAALGIYTTGSSILGAGVKTPRIRTKNLVSIIFCEAVAI 313
ET+P+ + +G + S +GAA G +G + GV P + K++V ++ + I
Sbjct: 8 ETAPF-FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGI 66
Query: 314 YGIIMAIVISQNIKSFDSKIASFRVLQINHEGGFRMFGSGLTVGLSNLXXXXXXXXXXXX 493
YG+I+A++IS I + K S+ + G+ SGL GL+ L
Sbjct: 67 YGLIIAVIISTGI---NPKTKSYYLFD-----GYAHLSSGLACGLAGLSAGMAIGIVGDA 118
Query: 494 AALADSANASLFVKILIVEIFGSAIGLFGVIVGIL 598
A++ LFV ++++ IF A+ L+G+IVGI+
Sbjct: 119 GVRANAQQPKLFVGMILILIFAEALALYGLIVGII 153
Score = 43.1 bits (100), Expect = 7e-04
Identities = 20/64 (31%), Positives = 39/64 (60%)
Frame = +2
Query: 152 WANIGIGLCISLSVLGAALGIYTTGSSILGAGVKTPRIRTKNLVSIIFCEAVAIYGIIMA 331
+A++ GL L+ L A + I G + + A + P++ ++ +IF EA+A+YG+I+
Sbjct: 92 YAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVG 151
Query: 332 IVIS 343
I++S
Sbjct: 152 IILS 155
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,164,599
Number of Sequences: 369166
Number of extensions: 1455169
Number of successful extensions: 3914
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3855
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6122130210
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)