Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_A22
(406 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P13471|RS14_RAT 40S ribosomal protein S14 173 1e-43
sp|P62264|RS14_MOUSE 40S ribosomal protein S14 >gi|50403752... 173 1e-43
sp|P42036|RS143_ARATH 40S ribosomal protein S14-3 172 3e-43
sp|Q9CAX6|RS142_ARATH 40S ribosomal protein S14-2 171 4e-43
sp|Q9SIH0|RS141_ARATH 40S ribosomal protein S14-1 171 4e-43
sp|P48150|RS14_CAEEL 40S ribosomal protein S14 171 7e-43
sp|P19950|RS141_MAIZE 40S ribosomal protein S14 (Clone MCH1) 170 9e-43
sp|P19951|RS142_MAIZE 40S ribosomal protein S14 (Clone MCH2) 169 2e-42
sp|Q08699|RS14_PODCA 40S ribosomal protein S14 167 7e-42
sp|O22584|RS14_LUPLU 40S ribosomal protein S14 167 1e-41
>sp|P13471|RS14_RAT 40S ribosomal protein S14
Length = 151
Score = 173 bits (438), Expect = 1e-43
Identities = 83/114 (72%), Positives = 96/114 (84%)
Frame = +1
Query: 4 VFGICHIFASFNDTFVHVTDVTGAETIVRVTGGMKVKADRDESSPYAAMLAAQDVAERCK 183
VFG+CHIFASFNDTFVHVTD++G ETI RVTGGMKVKADRDESSPYAAMLAAQDVA+RCK
Sbjct: 27 VFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCK 86
Query: 184 QLGITAVHVRVRATGGTKSRTXXXXXXXXXXXXXXSGMKIGRIEDVTPIPHDTT 345
+LGITA+H+++RATGG +++T SGMKIGRIEDVTPIP D+T
Sbjct: 87 ELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDST 140
>sp|P62264|RS14_MOUSE 40S ribosomal protein S14
sp|P62263|RS14_HUMAN 40S ribosomal protein S14
sp|P62265|RS14_CRIGR 40S ribosomal protein S14
Length = 151
Score = 173 bits (438), Expect = 1e-43
Identities = 83/114 (72%), Positives = 96/114 (84%)
Frame = +1
Query: 4 VFGICHIFASFNDTFVHVTDVTGAETIVRVTGGMKVKADRDESSPYAAMLAAQDVAERCK 183
VFG+CHIFASFNDTFVHVTD++G ETI RVTGGMKVKADRDESSPYAAMLAAQDVA+RCK
Sbjct: 27 VFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCK 86
Query: 184 QLGITAVHVRVRATGGTKSRTXXXXXXXXXXXXXXSGMKIGRIEDVTPIPHDTT 345
+LGITA+H+++RATGG +++T SGMKIGRIEDVTPIP D+T
Sbjct: 87 ELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDST 140
>sp|P42036|RS143_ARATH 40S ribosomal protein S14-3
Length = 150
Score = 172 bits (435), Expect = 3e-43
Identities = 81/115 (70%), Positives = 97/115 (84%)
Frame = +1
Query: 1 EVFGICHIFASFNDTFVHVTDVTGAETIVRVTGGMKVKADRDESSPYAAMLAAQDVAERC 180
+VFG+ H+FASFNDTF+HVTD++G ET+VR+TGGMKVKADRDESSPYAAMLAAQDVA+RC
Sbjct: 25 QVFGVVHVFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRC 84
Query: 181 KQLGITAVHVRVRATGGTKSRTXXXXXXXXXXXXXXSGMKIGRIEDVTPIPHDTT 345
K+LGITA+HV++RATGG K++T SGMKIGRIEDVTPIP D+T
Sbjct: 85 KELGITAIHVKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDST 139
>sp|Q9CAX6|RS142_ARATH 40S ribosomal protein S14-2
Length = 150
Score = 171 bits (434), Expect = 4e-43
Identities = 82/115 (71%), Positives = 97/115 (84%)
Frame = +1
Query: 1 EVFGICHIFASFNDTFVHVTDVTGAETIVRVTGGMKVKADRDESSPYAAMLAAQDVAERC 180
+VFG+ HIFASFNDTF+HVTD++G ET+VR+TGGMKVKADRDESSPYAAMLAAQDVA+RC
Sbjct: 25 QVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRC 84
Query: 181 KQLGITAVHVRVRATGGTKSRTXXXXXXXXXXXXXXSGMKIGRIEDVTPIPHDTT 345
K+LGITA+HV++RATGG K++T SGMKIGRIEDVTPIP D+T
Sbjct: 85 KELGITAMHVKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDST 139
>sp|Q9SIH0|RS141_ARATH 40S ribosomal protein S14-1
Length = 150
Score = 171 bits (434), Expect = 4e-43
Identities = 82/115 (71%), Positives = 97/115 (84%)
Frame = +1
Query: 1 EVFGICHIFASFNDTFVHVTDVTGAETIVRVTGGMKVKADRDESSPYAAMLAAQDVAERC 180
+VFG+ HIFASFNDTF+HVTD++G ET+VR+TGGMKVKADRDESSPYAAMLAAQDVA+RC
Sbjct: 25 QVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRC 84
Query: 181 KQLGITAVHVRVRATGGTKSRTXXXXXXXXXXXXXXSGMKIGRIEDVTPIPHDTT 345
K+LGITA+HV++RATGG K++T SGMKIGRIEDVTPIP D+T
Sbjct: 85 KELGITAMHVKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDST 139
>sp|P48150|RS14_CAEEL 40S ribosomal protein S14
Length = 152
Score = 171 bits (432), Expect = 7e-43
Identities = 81/114 (71%), Positives = 95/114 (83%)
Frame = +1
Query: 4 VFGICHIFASFNDTFVHVTDVTGAETIVRVTGGMKVKADRDESSPYAAMLAAQDVAERCK 183
+FG+ HIFASFNDTFVH+TD++G ETIVRVTGGMKVKADRDESSPYAAMLAAQDVA+RCK
Sbjct: 28 IFGVAHIFASFNDTFVHITDISGRETIVRVTGGMKVKADRDESSPYAAMLAAQDVADRCK 87
Query: 184 QLGITAVHVRVRATGGTKSRTXXXXXXXXXXXXXXSGMKIGRIEDVTPIPHDTT 345
QLGI A+H+++RATGGT+++T +GMKIGRIEDVTPIP D T
Sbjct: 88 QLGINALHIKLRATGGTRTKTPGPGAQSALRALARAGMKIGRIEDVTPIPSDCT 141
>sp|P19950|RS141_MAIZE 40S ribosomal protein S14 (Clone MCH1)
Length = 149
Score = 170 bits (431), Expect = 9e-43
Identities = 80/114 (70%), Positives = 96/114 (84%)
Frame = +1
Query: 4 VFGICHIFASFNDTFVHVTDVTGAETIVRVTGGMKVKADRDESSPYAAMLAAQDVAERCK 183
VFG+ HIFASFNDTF+HVTD++G ET+VR+TGGMKVKADRDESSPYAAMLAAQDVA+RCK
Sbjct: 25 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCK 84
Query: 184 QLGITAVHVRVRATGGTKSRTXXXXXXXXXXXXXXSGMKIGRIEDVTPIPHDTT 345
+LGITA+H+++RATGG K++T SGMKIGRIEDVTP+P D+T
Sbjct: 85 ELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPVPTDST 138
>sp|P19951|RS142_MAIZE 40S ribosomal protein S14 (Clone MCH2)
Length = 150
Score = 169 bits (428), Expect = 2e-42
Identities = 79/114 (69%), Positives = 96/114 (84%)
Frame = +1
Query: 4 VFGICHIFASFNDTFVHVTDVTGAETIVRVTGGMKVKADRDESSPYAAMLAAQDVAERCK 183
VFG+ HIFASFNDTF+HVTD++G ET+VR+TGGMKVKADRDESSPYAAMLA+QDVA+RCK
Sbjct: 26 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLASQDVAQRCK 85
Query: 184 QLGITAVHVRVRATGGTKSRTXXXXXXXXXXXXXXSGMKIGRIEDVTPIPHDTT 345
+LGITA+H+++RATGG K++T SGMKIGRIEDVTP+P D+T
Sbjct: 86 ELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPVPTDST 139
>sp|Q08699|RS14_PODCA 40S ribosomal protein S14
Length = 151
Score = 167 bits (423), Expect = 7e-42
Identities = 82/114 (71%), Positives = 93/114 (81%)
Frame = +1
Query: 4 VFGICHIFASFNDTFVHVTDVTGAETIVRVTGGMKVKADRDESSPYAAMLAAQDVAERCK 183
VFG+ HIFASFNDTFVHVTD++G ETI RVTGGMKVKADRDESSPYAAMLAAQDVA RCK
Sbjct: 27 VFGVAHIFASFNDTFVHVTDLSGKETIARVTGGMKVKADRDESSPYAAMLAAQDVAVRCK 86
Query: 184 QLGITAVHVRVRATGGTKSRTXXXXXXXXXXXXXXSGMKIGRIEDVTPIPHDTT 345
++GITA+HV++RATGG +++T SGMKIGRIEDVTPIP D T
Sbjct: 87 EIGITALHVKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDCT 140
>sp|O22584|RS14_LUPLU 40S ribosomal protein S14
Length = 150
Score = 167 bits (422), Expect = 1e-41
Identities = 80/114 (70%), Positives = 94/114 (82%)
Frame = +1
Query: 4 VFGICHIFASFNDTFVHVTDVTGAETIVRVTGGMKVKADRDESSPYAAMLAAQDVAERCK 183
VFG+ IFASFNDTF+HVTD++G ET+VR+TGGMKVKADRDESSPYAAMLAAQDVA RCK
Sbjct: 26 VFGVARIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVATRCK 85
Query: 184 QLGITAVHVRVRATGGTKSRTXXXXXXXXXXXXXXSGMKIGRIEDVTPIPHDTT 345
+LGITA+H+++RATGG K++T SGMKIGRIEDVTPIP D+T
Sbjct: 86 ELGITALHIKLRATGGNKTKTPGRGAQSALRALARSGMKIGRIEDVTPIPSDST 139
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,587,813
Number of Sequences: 369166
Number of extensions: 512031
Number of successful extensions: 1693
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1475
length of database: 68,354,980
effective HSP length: 98
effective length of database: 50,250,950
effective search space used: 1809034200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)