Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_A16
(463 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q57598|Y134_METJA Hypothetical protein MJ0134 60 3e-09
sp|P46959|GCD14_YEAST Protein GCD14 57 3e-08
sp|Q8BPB5|FBLN3_MOUSE EGF-containing fibulin-like extracell... 31 1.5
sp|Q12805|FBLN3_HUMAN EGF-containing fibulin-like extracell... 31 1.5
sp|Q7YQD7|FBLN3_MACFA EGF-containing fibulin-like extracell... 31 1.5
sp|O35568|FBLN3_RAT EGF-containing fibulin-like extracellul... 30 2.0
sp|Q99592|ZN238_HUMAN Zinc finger protein 238 (Transcriptio... 30 2.6
sp|O43913|ORC5_HUMAN Origin recognition complex subunit 5 30 2.6
sp|P09263|UL47_VZVD Alpha trans-inducing factor 91.8 kDa pr... 30 2.6
sp|Q9WUK6|ZN238_MOUSE Zinc finger protein 238 (Zfp-238) (Tr... 30 2.6
>sp|Q57598|Y134_METJA Hypothetical protein MJ0134
Length = 282
Score = 59.7 bits (143), Expect = 3e-09
Identities = 29/70 (41%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Frame = +3
Query: 57 EDLKVDAVMLDLPQPWSMVKHVIKVL-KYGGRVCFFSPCIEQVQRTVENLRSAGFSEILS 233
++ VD ++LDLP PW++V++ K L K GR+ + P IEQV++TVE L+ GF +I +
Sbjct: 178 DEKDVDVIVLDLPDPWNVVENAKKALNKKRGRIVTYLPYIEQVKKTVEKLKEEGFWDIHT 237
Query: 234 QECIQRNYNV 263
E I+R +
Sbjct: 238 YEIIEREIEI 247
>sp|P46959|GCD14_YEAST Protein GCD14
Length = 383
Score = 56.6 bits (135), Expect = 3e-08
Identities = 34/104 (32%), Positives = 48/104 (46%), Gaps = 19/104 (18%)
Frame = +3
Query: 3 LTDVITGHHRDVLDQGF-----------------PEDLKVDAVMLDLPQPWSMVKHVIKV 131
+ D +T HRDV GF L + V LDLP PW + H+ V
Sbjct: 158 IDDNVTITHRDVCQGGFLIKKGDTTSYEFGNNETAASLNANVVFLDLPAPWDAIPHLDSV 217
Query: 132 LKYGGRV--CFFSPCIEQVQRTVENLRSAGFSEILSQECIQRNY 257
+ +V C FSPCIEQV +T++ L G++++ E R Y
Sbjct: 218 ISVDEKVGLCCFSPCIEQVDKTLDVLEKYGWTDVEMVEIQGRQY 261
>sp|Q8BPB5|FBLN3_MOUSE EGF-containing fibulin-like extracellular matrix protein 1
precursor (Fibulin-3) (FIBL-3)
Length = 493
Score = 30.8 bits (68), Expect = 1.5
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +3
Query: 156 FFSPCIEQVQRTVENLRSAGFSEI-LSQECIQRNYNVVRSNLDEPHIGQEFSDGRIDCGA 332
F+ C Q N +E S +C Q+ YN++ S + + + G E S R++C
Sbjct: 235 FYCQCSPGFQLAANNYTCVDINECDASNQCAQQCYNILGSFICQCNQGYELSSDRLNC-- 292
Query: 333 TDGEMCHNTS 362
D + C +S
Sbjct: 293 EDIDECRTSS 302
>sp|Q12805|FBLN3_HUMAN EGF-containing fibulin-like extracellular matrix protein 1
precursor (Fibulin-3) (FIBL-3) (Fibrillin-like protein)
(Extracellular protein S1-5)
Length = 493
Score = 30.8 bits (68), Expect = 1.5
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +3
Query: 156 FFSPCIEQVQRTVENLRSAGFSEI-LSQECIQRNYNVVRSNLDEPHIGQEFSDGRIDCGA 332
F+ C Q N +E S +C Q+ YN++ S + + + G E S R++C
Sbjct: 235 FYCQCSPGFQLAANNYTCVDINECDASNQCAQQCYNILGSFICQCNQGYELSSDRLNC-- 292
Query: 333 TDGEMCHNTS 362
D + C +S
Sbjct: 293 EDIDECRTSS 302
>sp|Q7YQD7|FBLN3_MACFA EGF-containing fibulin-like extracellular matrix protein 1
precursor (Fibulin-3) (FIBL-3)
Length = 493
Score = 30.8 bits (68), Expect = 1.5
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +3
Query: 156 FFSPCIEQVQRTVENLRSAGFSEI-LSQECIQRNYNVVRSNLDEPHIGQEFSDGRIDCGA 332
F+ C Q N +E S +C Q+ YN++ S + + + G E S R++C
Sbjct: 235 FYCQCSPGFQLAANNYTCVDINECDASNQCAQQCYNILGSFICQCNQGYELSSDRLNC-- 292
Query: 333 TDGEMCHNTS 362
D + C +S
Sbjct: 293 EDIDECRTSS 302
>sp|O35568|FBLN3_RAT EGF-containing fibulin-like extracellular matrix protein 1
precursor (Fibulin-3) (FIBL-3) (T16 protein)
Length = 493
Score = 30.4 bits (67), Expect = 2.0
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +3
Query: 156 FFSPCIEQVQRTVENLRSAGFSEI-LSQECIQRNYNVVRSNLDEPHIGQEFSDGRIDCGA 332
F+ C Q N +E S +C Q+ YN++ S + + + G E S R++C
Sbjct: 235 FYCQCNPGFQLAANNYTCVDINECDASNQCAQQCYNILGSFICQCNQGYELSSDRLNC-- 292
Query: 333 TDGEMCHNTS 362
D + C +S
Sbjct: 293 EDIDECRTSS 302
>sp|Q99592|ZN238_HUMAN Zinc finger protein 238 (Transcriptional repressor RP58) (58 kDa
repressor protein) (Zinc finger protein C2H2-171)
(Translin associated zinc finger protein 1) (TAZ-1)
(Zinc finger and BTB domain containing protein 18)
Length = 522
Score = 30.0 bits (66), Expect = 2.6
Identities = 21/69 (30%), Positives = 32/69 (46%)
Frame = +3
Query: 153 CFFSPCIEQVQRTVENLRSAGFSEILSQECIQRNYNVVRSNLDEPHIGQEFSDGRIDCGA 332
C ++ VENL S+ FS + +V+RSNL + + +E S D G
Sbjct: 238 CVLDLSVKSSLSGVENLNSSYFS----------SQDVLRSNLVQVKVEKEASCDESDVGT 287
Query: 333 TDGEMCHNT 359
D +M H+T
Sbjct: 288 NDYDMEHST 296
>sp|O43913|ORC5_HUMAN Origin recognition complex subunit 5
Length = 435
Score = 30.0 bits (66), Expect = 2.6
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Frame = -2
Query: 276 DYFAQHYN-----FFEYILDLKFLKNLQIVNFPQFSELVLYMEKRNKLYHHISIL*LHVS 112
D++A + N F+ DLK L++L ++NFP++ E V+ E + L ++
Sbjct: 202 DFYAAYINILLGVFYTVCRDLKELRHLAVLNFPKYCEPVVKGEASER---DTRKLWRNIE 258
Query: 111 PYSKVAVNQA*QHQLLNLREI 49
P+ K A+ Q + LREI
Sbjct: 259 PHLKKAM------QTVYLREI 273
>sp|P09263|UL47_VZVD Alpha trans-inducing factor 91.8 kDa protein
Length = 819
Score = 30.0 bits (66), Expect = 2.6
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Frame = +3
Query: 168 CIEQVQRTVENLRSAGFSE--ILSQECIQRNYNVVRSNLDEPHIGQEFSDGRI 320
C+E V T L GF E +EC +R Y V+ D H+ +F R+
Sbjct: 267 CVEPVTLTGSMLAHNGFDESWFAMRECTRREYITVQGLYDPIHLRYQFDTSRM 319
>sp|Q9WUK6|ZN238_MOUSE Zinc finger protein 238 (Zfp-238) (Transcriptional repressor RP58)
(58 kDa repressor protein)
Length = 522
Score = 30.0 bits (66), Expect = 2.6
Identities = 21/69 (30%), Positives = 32/69 (46%)
Frame = +3
Query: 153 CFFSPCIEQVQRTVENLRSAGFSEILSQECIQRNYNVVRSNLDEPHIGQEFSDGRIDCGA 332
C ++ VENL S+ FS + +V+RSNL + + +E S D G
Sbjct: 238 CVLDLSVKSSLSGVENLNSSYFS----------SQDVLRSNLVQVKVEKEASCDESDVGT 287
Query: 333 TDGEMCHNT 359
D +M H+T
Sbjct: 288 NDYDMEHST 296
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,497,948
Number of Sequences: 369166
Number of extensions: 1165480
Number of successful extensions: 3094
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3092
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2584230740
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)