Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_P17
(283 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O17488|TBP_ARTSF TATA-box binding protein (TATA-box fact... 28 6.5
sp|P26355|TBP_DICDI TATA-box binding protein (TATA-box fact... 28 6.5
>sp|O17488|TBP_ARTSF TATA-box binding protein (TATA-box factor) (TATA binding factor)
(TATA sequence-binding protein) (TBP) (Transcription
initiation factor TFIID TBP subunit)
Length = 275
Score = 28.1 bits (61), Expect = 6.5
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -1
Query: 220 IICEVKLSTLLIDHKSQNLVIICKIKFPVLID 125
I+ ++ S +D K QN+V C +KFP+ ++
Sbjct: 178 IVQKLGFSAKFLDFKIQNMVGSCDVKFPIRLE 209
>sp|P26355|TBP_DICDI TATA-box binding protein (TATA-box factor) (TATA binding factor)
(TATA sequence-binding protein) (TBP) (Transcription
initiation factor TFIID TBP subunit)
Length = 205
Score = 28.1 bits (61), Expect = 6.5
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -1
Query: 220 IICEVKLSTLLIDHKSQNLVIICKIKFPVLIDLFNS 113
II ++ D K QN+V C +KFP+ ++L ++
Sbjct: 102 IIQKLDFPARFTDFKIQNIVGSCDVKFPIKLELLHN 137
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,868,819
Number of Sequences: 369166
Number of extensions: 435794
Number of successful extensions: 1147
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1147
length of database: 68,354,980
effective HSP length: 63
effective length of database: 56,716,675
effective search space used: 1701500250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)