Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_P12
(277 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q03105|VATL_TORMA Vacuolar ATP synthase 16 kDa proteolip... 93 2e-19
sp|P27449|VATL_HUMAN Vacuolar ATP synthase 16 kDa proteolip... 93 2e-19
sp|P63081|VATL_RAT Vacuolar ATP synthase 16 kDa proteolipid... 93 2e-19
sp|P23956|VATL_BOVIN Vacuolar ATP synthase 16 kDa proteolip... 93 2e-19
sp|O18882|VATL_SHEEP Vacuolar ATP synthase 16 kDa proteolip... 93 2e-19
sp|Q00607|VATL_CANTR Vacuolar ATP synthase 16 kDa proteolip... 89 3e-18
sp|P31413|VATL_NEUCR Vacuolar ATP synthase 16 kDa proteolip... 89 4e-18
sp|P31403|VATL_MANSE Vacuolar ATP synthase 16 kDa proteolip... 88 7e-18
sp|P55277|VATL_HELVI Vacuolar ATP synthase 16 kDa proteolip... 88 7e-18
sp|P23380|VATL_DROME Vacuolar ATP synthase 16 kDa proteolip... 88 7e-18
>sp|Q03105|VATL_TORMA Vacuolar ATP synthase 16 kDa proteolipid subunit (15 kDa
mediatophore protein)
Length = 154
Score = 92.8 bits (229), Expect = 2e-19
Identities = 48/48 (100%), Positives = 48/48 (100%)
Frame = +3
Query: 39 FAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 182
FAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK
Sbjct: 107 FAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 154
>sp|P27449|VATL_HUMAN Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 155
Score = 92.8 bits (229), Expect = 2e-19
Identities = 48/48 (100%), Positives = 48/48 (100%)
Frame = +3
Query: 39 FAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 182
FAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK
Sbjct: 108 FAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 155
>sp|P63081|VATL_RAT Vacuolar ATP synthase 16 kDa proteolipid subunit
sp|P63082|VATL_MOUSE Vacuolar ATP synthase 16 kDa proteolipid subunit (PL16)
Length = 155
Score = 92.8 bits (229), Expect = 2e-19
Identities = 48/48 (100%), Positives = 48/48 (100%)
Frame = +3
Query: 39 FAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 182
FAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK
Sbjct: 108 FAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 155
>sp|P23956|VATL_BOVIN Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 155
Score = 92.8 bits (229), Expect = 2e-19
Identities = 48/48 (100%), Positives = 48/48 (100%)
Frame = +3
Query: 39 FAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 182
FAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK
Sbjct: 108 FAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 155
>sp|O18882|VATL_SHEEP Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 155
Score = 92.8 bits (229), Expect = 2e-19
Identities = 48/48 (100%), Positives = 48/48 (100%)
Frame = +3
Query: 39 FAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 182
FAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK
Sbjct: 108 FAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 155
>sp|Q00607|VATL_CANTR Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 160
Score = 89.0 bits (219), Expect = 3e-18
Identities = 45/53 (84%), Positives = 50/53 (94%)
Frame = +3
Query: 39 FAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK*MQTI 197
FAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAL+L+++ Q +
Sbjct: 106 FAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALLLNSRASQDV 158
>sp|P31413|VATL_NEUCR Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 161
Score = 88.6 bits (218), Expect = 4e-18
Identities = 44/48 (91%), Positives = 48/48 (100%)
Frame = +3
Query: 39 FAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 182
FAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAL++++K
Sbjct: 107 FAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALLMNSK 154
Score = 30.0 bits (66), Expect = 1.7
Identities = 12/30 (40%), Positives = 23/30 (76%)
Frame = +3
Query: 87 QPRLFVGMILILIFAEVLGLYGLIVALILS 176
+P L V I+ +I A ++G+YGL+V++++S
Sbjct: 46 RPDLIVKNIVPVIMAGIIGIYGLVVSVLIS 75
>sp|P31403|VATL_MANSE Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 156
Score = 87.8 bits (216), Expect = 7e-18
Identities = 45/48 (93%), Positives = 46/48 (95%)
Frame = +3
Query: 39 FAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 182
FAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVA+ L TK
Sbjct: 108 FAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 155
>sp|P55277|VATL_HELVI Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 156
Score = 87.8 bits (216), Expect = 7e-18
Identities = 45/48 (93%), Positives = 46/48 (95%)
Frame = +3
Query: 39 FAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 182
FAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVA+ L TK
Sbjct: 108 FAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 155
>sp|P23380|VATL_DROME Vacuolar ATP synthase 16 kDa proteolipid subunit (Ductin) (VHA16K)
Length = 159
Score = 87.8 bits (216), Expect = 7e-18
Identities = 45/48 (93%), Positives = 46/48 (95%)
Frame = +3
Query: 39 FAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 182
FAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVA+ L TK
Sbjct: 112 FAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 159
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,637,662
Number of Sequences: 369166
Number of extensions: 371580
Number of successful extensions: 1336
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1334
length of database: 68,354,980
effective HSP length: 61
effective length of database: 57,086,145
effective search space used: 1712584350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)