Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_P03
(330 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P47652|Y412_MYCGE Hypothetical lipoprotein MG412 precursor 30 1.3
sp|Q03785|VHS1_YEAST Serine/threonine-protein kinase VHS1 (... 28 6.4
sp|P51762|RCEL_CHRVI Reaction center protein L chain (Photo... 28 6.4
>sp|P47652|Y412_MYCGE Hypothetical lipoprotein MG412 precursor
Length = 377
Score = 30.4 bits (67), Expect = 1.3
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 4/45 (8%)
Frame = -1
Query: 171 HFFTCSLLSVAFFFASCFALRACASLNLL----SSRVKPLLDAVS 49
+FF +LL++A S F L CA++NL+ SS V+PLL+ +S
Sbjct: 6 NFFKLTLLTLA----SAFFLSGCANINLISAVGSSSVQPLLNKLS 46
>sp|Q03785|VHS1_YEAST Serine/threonine-protein kinase VHS1 (Viable in a HAL3 SIT4
background protein 1)
Length = 461
Score = 28.1 bits (61), Expect = 6.4
Identities = 16/51 (31%), Positives = 21/51 (41%)
Frame = -1
Query: 171 HFFTCSLLSVAFFFASCFALRACASLNLLSSRVKPLLDAVSFEETPFVCFF 19
HF T LL F C AL C + +KP + E+ F+C F
Sbjct: 154 HFVTNGLLVKKVFLQICSALNYCHEHGIYHCDIKPENLLLDTEDNVFLCDF 204
>sp|P51762|RCEL_CHRVI Reaction center protein L chain (Photosynthetic reaction center L
subunit)
Length = 278
Score = 28.1 bits (61), Expect = 6.4
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -1
Query: 183 WMDYHFFTCSLLSVAFFFASCFALRACASLNL 88
++ +H+ +L++ FFF +C AL SL L
Sbjct: 170 FLHFHYNPAHMLAITFFFTNCLALSMHGSLIL 201
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,830,976
Number of Sequences: 369166
Number of extensions: 452862
Number of successful extensions: 1195
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1195
length of database: 68,354,980
effective HSP length: 78
effective length of database: 53,945,650
effective search space used: 1672315150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)