Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_O24
(811 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q26065|ACT_PLAMG Actin, adductor muscle 531 e-151
sp|P53486|ACT3_FUGRU Actin, cytoplasmic 3 (Beta-actin-3) 531 e-150
sp|P30163|ACT2_ONCVO Actin-2 531 e-150
sp|P41340|ACT3_LIMPO Actin-3 530 e-150
sp|O93400|ACTB_XENLA Actin, cytoplasmic 1 (Beta-actin) (Cyt... 530 e-150
sp|P92176|ACT2_LUMTE Actin-2 530 e-150
sp|Q964E0|ACTC_BIOTE Actin, cytoplasmic 530 e-150
sp|Q964E1|ACTC_BIOOB Actin, cytoplasmic 530 e-150
sp|O42161|ACTB_SALSA Actin, cytoplasmic 1 (Beta-actin) 530 e-150
sp|P68143|ACTB_OREMO Actin, cytoplasmic 1 (Beta-actin) >gi|... 530 e-150
>sp|Q26065|ACT_PLAMG Actin, adductor muscle
Length = 376
Score = 531 bits (1368), Expect = e-151
Identities = 259/269 (96%), Positives = 265/269 (98%)
Frame = +3
Query: 3 KAGFAGDDAPRAVFPSIVGRPRHQGAMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 182
KAGFAGDDAPRAVFPSIVGRPRHQG MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT
Sbjct: 19 KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 78
Query: 183 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQ 362
NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQ
Sbjct: 79 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQ 138
Query: 363 AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 542
AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG
Sbjct: 139 AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 198
Query: 543 YSFTTTAEREIVRDIKEKLCYIALDFDAEMRTASASSSLEKSYELPDGQVITIGNERFRC 722
YSFTTTAEREIVRDIKEKLCY+ALDF+ EM TA++SSSLEKSYELPDGQVITIGNERFRC
Sbjct: 199 YSFTTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRC 258
Query: 723 PEALFQPSFLGLESVGIHETTYNSIMKCD 809
PE+LFQPSFLG+ES GIHETTYNSIMKCD
Sbjct: 259 PESLFQPSFLGMESAGIHETTYNSIMKCD 287
>sp|P53486|ACT3_FUGRU Actin, cytoplasmic 3 (Beta-actin-3)
Length = 375
Score = 531 bits (1367), Expect = e-150
Identities = 259/269 (96%), Positives = 264/269 (98%)
Frame = +3
Query: 3 KAGFAGDDAPRAVFPSIVGRPRHQGAMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 182
KAGFAGDDAPRAVFPSIVGRPRHQG MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT
Sbjct: 18 KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 77
Query: 183 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQ 362
NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQ
Sbjct: 78 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQ 137
Query: 363 AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 542
AVLSLYASGRTTGIV+DSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG
Sbjct: 138 AVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 197
Query: 543 YSFTTTAEREIVRDIKEKLCYIALDFDAEMRTASASSSLEKSYELPDGQVITIGNERFRC 722
YSFTTTAEREIVRDIKEKLCY+ALDF+ EM TAS+SSSLEKSYELPDGQVITIGNERFRC
Sbjct: 198 YSFTTTAEREIVRDIKEKLCYVALDFEQEMATASSSSSLEKSYELPDGQVITIGNERFRC 257
Query: 723 PEALFQPSFLGLESVGIHETTYNSIMKCD 809
PEALFQPSFLG+ES GIHETTYNSIMKCD
Sbjct: 258 PEALFQPSFLGMESSGIHETTYNSIMKCD 286
>sp|P30163|ACT2_ONCVO Actin-2
Length = 376
Score = 531 bits (1367), Expect = e-150
Identities = 258/269 (95%), Positives = 264/269 (98%)
Frame = +3
Query: 3 KAGFAGDDAPRAVFPSIVGRPRHQGAMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 182
KAGFAGDDAPRAVFPSIVGRPRHQG MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT
Sbjct: 19 KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 78
Query: 183 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQ 362
NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQ
Sbjct: 79 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQ 138
Query: 363 AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 542
AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG
Sbjct: 139 AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 198
Query: 543 YSFTTTAEREIVRDIKEKLCYIALDFDAEMRTASASSSLEKSYELPDGQVITIGNERFRC 722
YSFTTTAEREIVRDIKEKLCY+ALDF+ EM TA++SSSLEKSYELPDGQVIT+GNERFRC
Sbjct: 199 YSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITVGNERFRC 258
Query: 723 PEALFQPSFLGLESVGIHETTYNSIMKCD 809
PEALFQPSFLG+ES GIHETTYNSIMKCD
Sbjct: 259 PEALFQPSFLGMESAGIHETTYNSIMKCD 287
>sp|P41340|ACT3_LIMPO Actin-3
Length = 376
Score = 530 bits (1366), Expect = e-150
Identities = 259/269 (96%), Positives = 264/269 (98%)
Frame = +3
Query: 3 KAGFAGDDAPRAVFPSIVGRPRHQGAMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 182
KAGFAGDDAPRAVFPSIVGRPRHQG MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT
Sbjct: 19 KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 78
Query: 183 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQ 362
NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQ
Sbjct: 79 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQ 138
Query: 363 AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 542
AVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG
Sbjct: 139 AVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 198
Query: 543 YSFTTTAEREIVRDIKEKLCYIALDFDAEMRTASASSSLEKSYELPDGQVITIGNERFRC 722
YSFTTTAEREIVRDIKEKLCY+ALDFD EM TA++SSSLEKSYELPDGQVITIGNERFRC
Sbjct: 199 YSFTTTAEREIVRDIKEKLCYVALDFDQEMATAASSSSLEKSYELPDGQVITIGNERFRC 258
Query: 723 PEALFQPSFLGLESVGIHETTYNSIMKCD 809
PEALFQPSFLG+ES GIHETTYNSIMKCD
Sbjct: 259 PEALFQPSFLGMESSGIHETTYNSIMKCD 287
>sp|O93400|ACTB_XENLA Actin, cytoplasmic 1 (Beta-actin) (Cytoplasmic beta actin)
Length = 375
Score = 530 bits (1365), Expect = e-150
Identities = 258/269 (95%), Positives = 264/269 (98%)
Frame = +3
Query: 3 KAGFAGDDAPRAVFPSIVGRPRHQGAMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 182
KAGFAGDDAPRAVFPSIVGRPRHQG MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT
Sbjct: 18 KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 77
Query: 183 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQ 362
NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQ
Sbjct: 78 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQ 137
Query: 363 AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 542
AVLSLYASGRTTGIV+DSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG
Sbjct: 138 AVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 197
Query: 543 YSFTTTAEREIVRDIKEKLCYIALDFDAEMRTASASSSLEKSYELPDGQVITIGNERFRC 722
YSFTTTAEREIVRDIKEKLCY+ALDF+ EM TA++SSSLEKSYELPDGQVITIGNERFRC
Sbjct: 198 YSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRC 257
Query: 723 PEALFQPSFLGLESVGIHETTYNSIMKCD 809
PEALFQPSFLG+ES GIHETTYNSIMKCD
Sbjct: 258 PEALFQPSFLGMESCGIHETTYNSIMKCD 286
>sp|P92176|ACT2_LUMTE Actin-2
Length = 376
Score = 530 bits (1365), Expect = e-150
Identities = 259/269 (96%), Positives = 264/269 (98%)
Frame = +3
Query: 3 KAGFAGDDAPRAVFPSIVGRPRHQGAMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 182
KAGFAGDDAPRAVFPSIVGRPRHQG MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT
Sbjct: 19 KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 78
Query: 183 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQ 362
NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN+PAMYVAIQ
Sbjct: 79 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQ 138
Query: 363 AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 542
AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG
Sbjct: 139 AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 198
Query: 543 YSFTTTAEREIVRDIKEKLCYIALDFDAEMRTASASSSLEKSYELPDGQVITIGNERFRC 722
YSFTTTAEREIVRDIKEKLCY+ALDF+ EM TASASSSLEKSYELPDGQVITIGNERFRC
Sbjct: 199 YSFTTTAEREIVRDIKEKLCYVALDFEQEMNTASASSSLEKSYELPDGQVITIGNERFRC 258
Query: 723 PEALFQPSFLGLESVGIHETTYNSIMKCD 809
PEA+F SFLG+ESVGIHETTYNSIMKCD
Sbjct: 259 PEAMFHASFLGMESVGIHETTYNSIMKCD 287
>sp|Q964E0|ACTC_BIOTE Actin, cytoplasmic
Length = 376
Score = 530 bits (1365), Expect = e-150
Identities = 257/269 (95%), Positives = 264/269 (98%)
Frame = +3
Query: 3 KAGFAGDDAPRAVFPSIVGRPRHQGAMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 182
KAGFAGDDAPRAVFPSIVGRPRHQG MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT
Sbjct: 19 KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 78
Query: 183 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQ 362
NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQ
Sbjct: 79 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQ 138
Query: 363 AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 542
AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAI+RLDLAGRDLTDYLMKILTERG
Sbjct: 139 AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERG 198
Query: 543 YSFTTTAEREIVRDIKEKLCYIALDFDAEMRTASASSSLEKSYELPDGQVITIGNERFRC 722
YSFTTTAEREIVRDIKEKLCY+ALDF+ EM+TAS SSSLEKSYELPDGQVITIGNERFRC
Sbjct: 199 YSFTTTAEREIVRDIKEKLCYVALDFEQEMQTASTSSSLEKSYELPDGQVITIGNERFRC 258
Query: 723 PEALFQPSFLGLESVGIHETTYNSIMKCD 809
PEA+FQPSFLG+E+ GIHETTYNSIMKCD
Sbjct: 259 PEAMFQPSFLGMEAAGIHETTYNSIMKCD 287
>sp|Q964E1|ACTC_BIOOB Actin, cytoplasmic
Length = 376
Score = 530 bits (1365), Expect = e-150
Identities = 257/269 (95%), Positives = 265/269 (98%)
Frame = +3
Query: 3 KAGFAGDDAPRAVFPSIVGRPRHQGAMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 182
KAGFAGDDAPRAVFPSIVGRPRHQG MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT
Sbjct: 19 KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 78
Query: 183 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQ 362
NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQ
Sbjct: 79 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQ 138
Query: 363 AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 542
AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAI+RLDLAGRDLTDYLMKILTERG
Sbjct: 139 AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERG 198
Query: 543 YSFTTTAEREIVRDIKEKLCYIALDFDAEMRTASASSSLEKSYELPDGQVITIGNERFRC 722
YSFTTTAEREIVRDIKEKLCY+ALDF+ EM+TA++SSSLEKSYELPDGQVITIGNERFRC
Sbjct: 199 YSFTTTAEREIVRDIKEKLCYVALDFEQEMQTATSSSSLEKSYELPDGQVITIGNERFRC 258
Query: 723 PEALFQPSFLGLESVGIHETTYNSIMKCD 809
PEALFQPSFLG+E+ GIHETTYNSIMKCD
Sbjct: 259 PEALFQPSFLGMEAAGIHETTYNSIMKCD 287
>sp|O42161|ACTB_SALSA Actin, cytoplasmic 1 (Beta-actin)
Length = 375
Score = 530 bits (1364), Expect = e-150
Identities = 258/269 (95%), Positives = 264/269 (98%)
Frame = +3
Query: 3 KAGFAGDDAPRAVFPSIVGRPRHQGAMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 182
KAGFAGDDAPRAVFPSIVGRPRHQG MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT
Sbjct: 18 KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 77
Query: 183 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQ 362
NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQ
Sbjct: 78 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQ 137
Query: 363 AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 542
AVLSLYASGRTTGIV+DSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG
Sbjct: 138 AVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 197
Query: 543 YSFTTTAEREIVRDIKEKLCYIALDFDAEMRTASASSSLEKSYELPDGQVITIGNERFRC 722
YSFTTTAEREIVRDIKEKLCY+ALDF+ EM TA++SSSLEKSYELPDGQVITIGNERFRC
Sbjct: 198 YSFTTTAEREIVRDIKEKLCYVALDFEQEMGTAASSSSLEKSYELPDGQVITIGNERFRC 257
Query: 723 PEALFQPSFLGLESVGIHETTYNSIMKCD 809
PEALFQPSFLG+ES GIHETTYNSIMKCD
Sbjct: 258 PEALFQPSFLGMESCGIHETTYNSIMKCD 286
>sp|P68143|ACTB_OREMO Actin, cytoplasmic 1 (Beta-actin)
sp|P68142|ACT1_FUGRU Actin, cytoplasmic 1 (Beta-actin-1)
Length = 375
Score = 530 bits (1364), Expect = e-150
Identities = 258/269 (95%), Positives = 264/269 (98%)
Frame = +3
Query: 3 KAGFAGDDAPRAVFPSIVGRPRHQGAMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 182
KAGFAGDDAPRAVFPSIVGRPRHQG MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT
Sbjct: 18 KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 77
Query: 183 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQ 362
NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQ
Sbjct: 78 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQ 137
Query: 363 AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 542
AVLSLYASGRTTGIV+DSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG
Sbjct: 138 AVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 197
Query: 543 YSFTTTAEREIVRDIKEKLCYIALDFDAEMRTASASSSLEKSYELPDGQVITIGNERFRC 722
YSFTTTAEREIVRDIKEKLCY+ALDF+ EM TA++SSSLEKSYELPDGQVITIGNERFRC
Sbjct: 198 YSFTTTAEREIVRDIKEKLCYVALDFEQEMGTAASSSSLEKSYELPDGQVITIGNERFRC 257
Query: 723 PEALFQPSFLGLESVGIHETTYNSIMKCD 809
PEALFQPSFLG+ES GIHETTYNSIMKCD
Sbjct: 258 PEALFQPSFLGMESCGIHETTYNSIMKCD 286
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,598,943
Number of Sequences: 369166
Number of extensions: 1927418
Number of successful extensions: 6386
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6232
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7715018400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)