Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_O15
(563 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9BW30|CG38_HUMAN Protein CGI-38 65 9e-11
sp|P59282|P25B_HUMAN Protein p25-beta 64 2e-10
sp|Q9CRB6|CG38_MOUSE Protein CGI-38 homolog 63 4e-10
sp|Q7TQD2|P25A_MOUSE Tubulin polymerization-promoting prote... 60 3e-09
sp|Q27957|P25A_BOVIN Tubulin polymerization-promoting prote... 58 2e-08
sp|O94811|P25A_HUMAN Tubulin polymerization-promoting prote... 56 5e-08
sp|P91127|YBYK_CAEEL Hypothetical protein C32E8.3 in chromo... 53 5e-07
sp|Q9VV43|Y4893_DROME Hypothetical protein CG4893 47 3e-05
sp|O46409|APOA4_PIG Apolipoprotein A-IV precursor (Apo-AIV)... 31 2.4
sp|Q6BS73|PEX6_DEBHA Peroxisomal biogenesis factor 6 (Perox... 30 3.2
>sp|Q9BW30|CG38_HUMAN Protein CGI-38
Length = 176
Score = 65.5 bits (158), Expect = 9e-11
Identities = 41/129 (31%), Positives = 64/129 (49%), Gaps = 1/129 (0%)
Frame = +1
Query: 49 KTIKKICTDAKLYT-KTFTANDVDIEFRKCIGNQKKDVDFAGFENFLDKFFIPAYAKSCK 225
K K+C D K+ K+ T DVDI F K G + +++ F+ L++ + K
Sbjct: 33 KNWAKLCKDCKVADGKSVTGTDVDIVFSKVKGKSARVINYEEFKKALEELATKRFKGKSK 92
Query: 226 KDAAAISDEVKKKIISNGPKAHGATKASKDGATERLTDVKGYTGARKEAFDAETXXXXXX 405
++A D + + + P G TKA GA +RLTD YTG+ KE FD E+
Sbjct: 93 EEAF---DAICQLVAGKEPANVGVTKAKTGGAVDRLTDTSRYTGSHKERFD-ESGKGKGI 148
Query: 406 EGREYLVDE 432
GR+ ++D+
Sbjct: 149 AGRQDILDD 157
>sp|P59282|P25B_HUMAN Protein p25-beta
Length = 170
Score = 64.3 bits (155), Expect = 2e-10
Identities = 49/146 (33%), Positives = 65/146 (44%), Gaps = 5/146 (3%)
Frame = +1
Query: 7 FCESTKKGSTTATDKTIKKICTDAKLYT-KTFTANDVDIEFRKCIGNQKKDVDFAGFENF 183
F ES+ G T +K K+C D + KT T+ DVDI F K + + F F+
Sbjct: 15 FGESSSSG-TEMNNKNFSKLCKDCGIMDGKTVTSTDVDIVFSKVKAKNARTITFQQFKEA 73
Query: 184 LDKFFIPAYAKSCKKDAAAISDEVKKKIIS----NGPKAHGATKASKDGATERLTDVKGY 351
+ + K+ DEV + I P GATKA+ GA +RLTD Y
Sbjct: 74 VKEL-------GQKRFKGKSPDEVLENIYGLMEGKDPATTGATKATTVGAVDRLTDTSKY 126
Query: 352 TGARKEAFDAETXXXXXXEGREYLVD 429
TG KE FD E+ GRE + D
Sbjct: 127 TGTHKELFD-ESGKGKGIAGREEMTD 151
>sp|Q9CRB6|CG38_MOUSE Protein CGI-38 homolog
Length = 176
Score = 63.2 bits (152), Expect = 4e-10
Identities = 41/129 (31%), Positives = 62/129 (48%), Gaps = 1/129 (0%)
Frame = +1
Query: 49 KTIKKICTDAKLYT-KTFTANDVDIEFRKCIGNQKKDVDFAGFENFLDKFFIPAYAKSCK 225
K K+C D K+ K T DVDI F K + +++ F+ L++ + K
Sbjct: 33 KNWAKLCKDCKVADGKAVTGTDVDIVFSKVKAKSARVINYEEFKKALEELATKRFKGKSK 92
Query: 226 KDAAAISDEVKKKIISNGPKAHGATKASKDGATERLTDVKGYTGARKEAFDAETXXXXXX 405
++A D + + I P G TKA GA +RLTD YTG+ KE FD E+
Sbjct: 93 EEAF---DAICQLIAGKEPANIGVTKAKTGGAVDRLTDTSKYTGSHKERFD-ESGKGKGI 148
Query: 406 EGREYLVDE 432
GR+ ++D+
Sbjct: 149 AGRQDILDD 157
>sp|Q7TQD2|P25A_MOUSE Tubulin polymerization-promoting protein (TPPP)
Length = 218
Score = 60.5 bits (145), Expect = 3e-09
Identities = 45/141 (31%), Positives = 61/141 (43%), Gaps = 6/141 (4%)
Frame = +1
Query: 28 GSTTATDKTI-----KKICTDAKLYT-KTFTANDVDIEFRKCIGNQKKDVDFAGFENFLD 189
G T AT K + K+C D + K T DVDI F K G + + F F+ L+
Sbjct: 61 GDTRATGKEMHGKNWSKLCKDCHVIDGKNVTVTDVDIVFSKIKGKSCRTITFEQFQEALE 120
Query: 190 KFFIPAYAKSCKKDAAAISDEVKKKIISNGPKAHGATKASKDGATERLTDVKGYTGARKE 369
+ + ++A EV + I P G TKA RLTD +TG+ KE
Sbjct: 121 ELAKKRFKDKSSEEAVR---EVHRLIEGRAPVISGVTKAVSSPTVSRLTDTSKFTGSHKE 177
Query: 370 AFDAETXXXXXXEGREYLVDE 432
FD ++ GR LVDE
Sbjct: 178 RFD-QSGKGKGKAGRVDLVDE 197
>sp|Q27957|P25A_BOVIN Tubulin polymerization-promoting protein (TPPP) (25 kDa
brain-specific protein) (p25-alpha)
Length = 218
Score = 57.8 bits (138), Expect = 2e-08
Identities = 43/129 (33%), Positives = 57/129 (44%), Gaps = 1/129 (0%)
Frame = +1
Query: 49 KTIKKICTDAKLYT-KTFTANDVDIEFRKCIGNQKKDVDFAGFENFLDKFFIPAYAKSCK 225
K K+C D ++ ++ T DVDI F K G + + F F+ L++ A +
Sbjct: 73 KNWSKLCRDCQVIDGRSVTVTDVDIVFSKIKGKSCRTITFEQFKEALEEL---AKKRFKD 129
Query: 226 KDAAAISDEVKKKIISNGPKAHGATKASKDGATERLTDVKGYTGARKEAFDAETXXXXXX 405
K A EV K I P G TKA RLTD +TG+ KE FD +
Sbjct: 130 KSAEEAVREVHKLIEGKAPIISGVTKAISSPTVSRLTDTSKFTGSHKERFD-PSGRGKGR 188
Query: 406 EGREYLVDE 432
GR LVDE
Sbjct: 189 AGRVDLVDE 197
>sp|O94811|P25A_HUMAN Tubulin polymerization-promoting protein (TPPP) (25 kDa
brain-specific protein) (p25-alpha) (p24) (p25)
Length = 219
Score = 56.2 bits (134), Expect = 5e-08
Identities = 40/129 (31%), Positives = 56/129 (43%), Gaps = 1/129 (0%)
Frame = +1
Query: 49 KTIKKICTDAKLYT-KTFTANDVDIEFRKCIGNQKKDVDFAGFENFLDKFFIPAYAKSCK 225
K K+C D ++ + T DVDI F K G + + F F+ L++ +
Sbjct: 74 KNWSKLCKDCQVIDGRNVTVTDVDIVFSKIKGKSCRTITFEQFQEALEELAKKRFKDKSS 133
Query: 226 KDAAAISDEVKKKIISNGPKAHGATKASKDGATERLTDVKGYTGARKEAFDAETXXXXXX 405
++A EV + I P G TKA RLTD +TG+ KE FD +
Sbjct: 134 EEAVR---EVHRLIEGKAPIISGVTKAISSPTVSRLTDTTKFTGSHKERFD-PSGKGKGK 189
Query: 406 EGREYLVDE 432
GR LVDE
Sbjct: 190 AGRVDLVDE 198
>sp|P91127|YBYK_CAEEL Hypothetical protein C32E8.3 in chromosome I
Length = 180
Score = 53.1 bits (126), Expect = 5e-07
Identities = 48/127 (37%), Positives = 57/127 (44%), Gaps = 5/127 (3%)
Frame = +1
Query: 19 TKKGSTTATDKTIK---KICTDAK-LYTKTFTANDVDIEFRKCIGNQKKDVDFAGFENFL 186
TK G+ TAT+ T K K DA L K T I F K G +KK F + L
Sbjct: 22 TKFGAATATEMTGKNFDKWLKDAGVLDNKAITGTMTGIAFSKVTGPKKK-ATFDETKKVL 80
Query: 187 DKFFIPAYAKSCKKDAAAISDEVKKKIIS-NGPKAHGATKASKDGATERLTDVKGYTGAR 363
F A+ KK D + +K+ P GA KA+ G RLTD YTGA
Sbjct: 81 -AFVAEDRARQSKKPIQDELDAITEKLAKLEAPSVGGAAKANAAGVYSRLTDHTKYTGAH 139
Query: 364 KEAFDAE 384
KE FDAE
Sbjct: 140 KERFDAE 146
>sp|Q9VV43|Y4893_DROME Hypothetical protein CG4893
Length = 192
Score = 47.0 bits (110), Expect = 3e-05
Identities = 41/130 (31%), Positives = 61/130 (46%), Gaps = 1/130 (0%)
Frame = +1
Query: 43 TDKTIKKICTDAKLYTKTFTANDVDIEFRKCIGNQKKDVDFAGFENFLDKFFIPAYAKSC 222
+DK +K+ AK+ K T D I F+K + + + + FLD AK+
Sbjct: 62 SDKWMKQ----AKVIDKKITTTDTGIHFKKF---KAMKISLSDYNKFLDDL-----AKTK 109
Query: 223 KKDAAAISDEVKKKIISNGPKAHGATKASKDGAT-ERLTDVKGYTGARKEAFDAETXXXX 399
K + + E+K+K+ S G + A K A +RLTD YTG+ KE FDA +
Sbjct: 110 KVELS----EIKQKLASCGAPGVVSVSAGKAAAAVDRLTDTSKYTGSHKERFDA-SGKGK 164
Query: 400 XXEGREYLVD 429
GR +VD
Sbjct: 165 GIAGRRNVVD 174
>sp|O46409|APOA4_PIG Apolipoprotein A-IV precursor (Apo-AIV) (ApoA-IV)
Length = 382
Score = 30.8 bits (68), Expect = 2.4
Identities = 14/61 (22%), Positives = 31/61 (50%)
Frame = +1
Query: 193 FFIPAYAKSCKKDAAAISDEVKKKIISNGPKAHGATKASKDGATERLTDVKGYTGARKEA 372
F + A+ K +A +DE+++K++ HG K + +G + L +++ + + E
Sbjct: 243 FQMKKQAEELKAKISANADELRQKLVPVAENVHGHLKGNTEGLQKSLLELRSHLDQQVEE 302
Query: 373 F 375
F
Sbjct: 303 F 303
>sp|Q6BS73|PEX6_DEBHA Peroxisomal biogenesis factor 6 (Peroxin-6)
Length = 1198
Score = 30.4 bits (67), Expect = 3.2
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +1
Query: 1 LEFCESTKKGSTTATDKTIKKICTDAKLYTKTFTANDVDIEFRK 132
++ E K+ S T T +C+D+ L T TAN+VD + +K
Sbjct: 1036 VDLYEIAKRCSFTFTGADFYALCSDSMLNAMTRTANEVDAKIKK 1079
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,083,799
Number of Sequences: 369166
Number of extensions: 891323
Number of successful extensions: 2632
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2632
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4078830820
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)