Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_O11
(304 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O44783|SPY_DROME Protein sprouty (Spry) 31 1.0
sp|P02981|TCR3_ECOLI Tetracycline resistance protein, class... 30 2.3
sp|P38565|MUCB1_XENLA Integumentary mucin B.1 (FIM-B.1) 29 3.9
sp|O97395|CLAPI_STYCL Clavaspirin precursor 29 3.9
sp|O81086|TPSD1_ABIGR Alpha-bisabolene synthase ((E)-alpha-... 28 5.1
sp|O18492|CLAVE_STYCL Clavanin E precursor 28 5.1
sp|P80710|CLAVA_STYCL Clavanin A precursor 28 6.6
sp|O18493|CLAVC_STYCL Clavanin C precursor 28 8.7
>sp|O44783|SPY_DROME Protein sprouty (Spry)
Length = 589
Score = 30.8 bits (68), Expect = 1.0
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -3
Query: 206 HRCLLFLDQQFHIYLVNHR*SLQDKQLQ*PQRMQDKLHCEQHNQHH 69
H LL + H++L H+ LQ +Q Q Q+ Q + Q NQ H
Sbjct: 227 HHLLLLPQRNQHLHLQQHQQHLQQQQQQQQQQQQQQHLQHQQNQQH 272
>sp|P02981|TCR3_ECOLI Tetracycline resistance protein, class C (TETA(C))
Length = 396
Score = 29.6 bits (65), Expect = 2.3
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Frame = +2
Query: 47 GIVGDVLHGVGCAAHNVVCLAFFAATEVVC---LGAITD 154
G++ D++H A+H V LA +A + +C LGA++D
Sbjct: 30 GLLRDIVHSDSIASHYGVLLALYALMQFLCAPVLGALSD 68
>sp|P38565|MUCB1_XENLA Integumentary mucin B.1 (FIM-B.1)
Length = 398
Score = 28.9 bits (63), Expect = 3.9
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = -2
Query: 174 PHLSCKSSVIAPRQTTSVAAKNARQTTL*AAQPTPCRTSPTIPKIFSSFST 22
P + S AP +TT + +TT+ + + TP + T+P + S ST
Sbjct: 36 PSETTGESTPAPSETTGESTPAPSETTVPSGESTPAPSETTVPSVPSGEST 86
>sp|O97395|CLAPI_STYCL Clavaspirin precursor
Length = 80
Score = 28.9 bits (63), Expect = 3.9
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Frame = +2
Query: 2 LSINAMKVEK----EEKIFGIVGDVLHGVGCAAHNV 97
L I+A +E+ EEK +G V+HG+G H++
Sbjct: 13 LGIDAKSLEESKADEEKFLRFIGSVIHGIGHLVHHI 48
>sp|O81086|TPSD1_ABIGR Alpha-bisabolene synthase ((E)-alpha-bisabolene synthase)
(AgfEabis)
Length = 817
Score = 28.5 bits (62), Expect = 5.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 113 FAATEVVCLGAITDDLQDKCGTVDQ 187
F T+V CL + DD+ D GT+D+
Sbjct: 553 FLFTKVACLQTVLDDMYDTYGTLDE 577
>sp|O18492|CLAVE_STYCL Clavanin E precursor
Length = 80
Score = 28.5 bits (62), Expect = 5.1
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
Frame = +2
Query: 2 LSINAMKVEK----EEKIFGIVGDVLHGVGCAAH 91
L INA +E+ EEK+F ++G ++H VG H
Sbjct: 13 LGINAKSLEERKSEEEKLFKLLGKIIHHVGNFVH 46
>sp|P80710|CLAVA_STYCL Clavanin A precursor
Length = 80
Score = 28.1 bits (61), Expect = 6.6
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Frame = +2
Query: 2 LSINAMKVEK----EEKIFGIVGDVLHGVGCAAH 91
L INA +E+ EEK+F +G ++H VG H
Sbjct: 13 LGINAKSLEERKSEEEKVFQFLGKIIHHVGNFVH 46
>sp|O18493|CLAVC_STYCL Clavanin C precursor
Length = 80
Score = 27.7 bits (60), Expect = 8.7
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 4/30 (13%)
Frame = +2
Query: 2 LSINAMKVEK----EEKIFGIVGDVLHGVG 79
L INA +E+ EEK+F ++G ++H VG
Sbjct: 13 LGINAKSLEERKSEEEKVFHLLGKIIHHVG 42
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,225,957
Number of Sequences: 369166
Number of extensions: 441172
Number of successful extensions: 1260
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1256
length of database: 68,354,980
effective HSP length: 69
effective length of database: 55,608,265
effective search space used: 1723856215
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)