Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_O10
(864 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp||Q687E1_2 [Segment 2 of 2] Nucleotide pyrophosphatase/ph... 71 3e-12
sp|Q38924|PPAF_ARATH Iron(III)-zinc(II) purple acid phospha... 69 2e-11
sp|P80366|PPAF_PHAVU Iron(III)-zinc(II) purple acid phospha... 63 9e-10
sp|Q12546|PPA_ASPFI Acid phosphatase precursor (pH 6-optimu... 54 6e-07
sp|Q05205|PPB_LYSEN Alkaline phosphatase precursor (APASE) 40 0.011
sp|Q50644|YP77_MYCTU Hypothetical protein Rv2577/MT2654 39 0.024
sp|P41586|PACR_HUMAN Pituitary adenylate cyclase-activating... 34 0.60
sp|P0AC44|DHSD_ECOLI Succinate dehydrogenase hydrophobic me... 33 1.0
sp|P19274|VTPX_TTV1 Viral protein TPX 32 1.8
sp|P19275|VTP3_TTV1V Viral protein TPX 32 1.8
>sp||Q687E1_2 [Segment 2 of 2] Nucleotide pyrophosphatase/phosphodiesterase
Length = 350
Score = 71.2 bits (173), Expect = 3e-12
Identities = 61/203 (30%), Positives = 95/203 (46%), Gaps = 22/203 (10%)
Frame = +3
Query: 318 WSEIHTFKTFP-PGSNWPTRYVVVGDMG-----------NLNARSLAAIQRETEK-GFYD 458
W++ +TF+ P PG N R +V GDMG N SL R E YD
Sbjct: 7 WAKPYTFRAPPTPGQNSLQRIIVFGDMGKAERDGSNEFANYQPGSLNTTDRLIEDLDNYD 66
Query: 459 MVLHVGDFAYNMDSYNAQTGDQFMRQIQPVAAQLPYMTVPGNHEEAYNFSNYRRRFTMPG 638
+V H+GD Y + Y +Q DQF Q+ P++A+ PYM GNHE ++ N F +
Sbjct: 67 IVFHIGDMPY-ANGYLSQW-DQFTAQVAPISAKKPYMVASGNHER--DWPNTGGFFDVKD 122
Query: 639 GDGEGQYFSFNVGYAHIIGFSSEFYYFTNYGFKQI---ENQYNW-----LLNDLKEANKP 794
GE + + Y + + F+Y +YG + +++++W ++E
Sbjct: 123 SGGECGVPAETM-YYYPAENRANFWYKVDYGMFRFCVGDSEHDWREGTPQYKFIEECLST 181
Query: 795 ENRAVRPWIIAMGHRPM-YCSNS 860
+R +PW+I HR + Y SNS
Sbjct: 182 VDRKHQPWLIFTAHRVLGYSSNS 204
>sp|Q38924|PPAF_ARATH Iron(III)-zinc(II) purple acid phosphatase precursor (PAP)
Length = 469
Score = 68.6 bits (166), Expect = 2e-11
Identities = 73/285 (25%), Positives = 120/285 (42%), Gaps = 19/285 (6%)
Frame = +3
Query: 57 YNQPEQIHLSIGSNI-NXXXXXXXXXXXXNESIVIYGPDKSMNLKQ-NGTVD--KFVDGG 224
+N P+Q+H++ G++ N V Y + + KQ TV+ +F +
Sbjct: 57 HNSPQQVHVTQGNHEGNGVIISWVTPVKPGSKTVQYWCENEKSRKQAEATVNTYRFFNYT 116
Query: 225 SEKRQIFMHRVILPNLLPFTQYSYTVGSRFGWSEIHTFKTFPP--GSNWPTRYVVVGDMG 398
S ++H ++ +L T+Y Y +GS WS F PP G + P + ++GD+G
Sbjct: 117 SG----YIHHCLIDDLEFDTKYYYEIGSG-KWSRRFWF-FIPPKSGPDVPYTFGLIGDLG 170
Query: 399 NLNARSLAAIQRETEKGFYDMVLHVGDFAY--NMDSYNAQTGDQFMRQIQPVAAQLPYMT 572
+ E G VL VGD +Y +++ D + R ++ A P++
Sbjct: 171 QTYDSNSTLSHYEMNPGKGQAVLFVGDLSYADRYPNHDNNRWDTWGRFVERSVAYQPWIW 230
Query: 573 VPGNHE--------EAYNFSNYRRRFTMP---GGDGEGQYFSFNVGYAHIIGFSSEFYYF 719
GNHE E F + R+ P G ++S A+II S +
Sbjct: 231 TAGNHEIDFVPDIGEIEPFKPFMNRYHTPHKASGSISPLWYSIKRASAYIIVMSC----Y 286
Query: 720 TNYGFKQIENQYNWLLNDLKEANKPENRAVRPWIIAMGHRPMYCS 854
++YG QY WL +L+ N+ E PW+I + H P Y S
Sbjct: 287 SSYGI--YTPQYKWLEKELQGVNRTET----PWLIVLVHSPFYSS 325
>sp|P80366|PPAF_PHAVU Iron(III)-zinc(II) purple acid phosphatase (PAP)
Length = 432
Score = 63.2 bits (152), Expect = 9e-10
Identities = 74/289 (25%), Positives = 118/289 (40%), Gaps = 23/289 (7%)
Frame = +3
Query: 57 YNQPEQIHLSIGSNINXXXXXXXXXXXX-NESIVIYGPDKSMN---LKQNGTVDKFVDGG 224
YN P+Q+H++ G + S V Y +K+ K + +F +
Sbjct: 24 YNAPQQVHITQGDLVGRAMIISWVTMDEPGSSAVRYWSEKNGRKRIAKGKMSTYRFFNYS 83
Query: 225 SEKRQIFMHRVILPNLLPFTQYSYTVGSRFGWSEIHTFKTFPP-GSNWPTRYVVVGDMGN 401
S F+H + L T+Y Y VG R + +F T P G + P + ++GD+G
Sbjct: 84 SG----FIHHTTIRKLKYNTKYYYEVGLR-NTTRRFSFITPPQTGLDVPYTFGLIGDLGQ 138
Query: 402 L--NARSLAAIQRETEKGFYDMVLHVGDFAY-----NMDSYNAQTGDQFMRQIQPVAAQL 560
+ +L+ + +KG VL VGD +Y N D+ T +F + A
Sbjct: 139 SFDSNTTLSHYELSPKKG--QTVLFVGDLSYADRYPNHDNVRWDTWGRFTERS---VAYQ 193
Query: 561 PYMTVPGNHE--------EAYNFSNYRRRFTMPGGDGEGQ---YFSFNVGYAHIIGFSSE 707
P++ GNHE E F + R+ +P + ++S AHII SS
Sbjct: 194 PWIWTAGNHEIEFAPEINETEPFKPFSYRYHVPYEASQSTSPFWYSIKRASAHIIVLSSH 253
Query: 708 FYYFTNYGFKQIENQYNWLLNDLKEANKPENRAVRPWIIAMGHRPMYCS 854
Y QY WL +L++ + E PW+I + H P+Y S
Sbjct: 254 IAYGRG------TPQYTWLKKELRKVKRSET----PWLIVLMHSPLYNS 292
>sp|Q12546|PPA_ASPFI Acid phosphatase precursor (pH 6-optimum acid phosphatase) (APase6)
Length = 614
Score = 53.9 bits (128), Expect = 6e-07
Identities = 75/339 (22%), Positives = 109/339 (32%), Gaps = 135/339 (39%)
Frame = +3
Query: 243 FMHRVILPNLLPFTQYSYTVGSRFGW--SEIHTFKTF-PPGSNWPTRYVVVGDMGNLNAR 413
F H V + L P T Y Y + + G SE+ +FKT P G V+ DMG NA
Sbjct: 138 FFHEVSIDGLEPDTTYYYQIPAANGTTQSEVLSFKTSRPAGHPGSFSVAVLNDMGYTNAH 197
Query: 414 SL--AAIQRETEKGFYDMVLHVGDFAYNMD--------------SYNAQTG--------- 518
++ TE + H GD +Y D YN +
Sbjct: 198 GTHKQLVKAATEGTAF--AWHGGDLSYADDWYSGILACADDWPVCYNGTSSTLPGGGPLP 255
Query: 519 -------------------------------DQFMRQIQPVAAQLPYMTVPGNHEE---- 593
D + + + V ++PYM +PGNHE
Sbjct: 256 EEYKKPLPAGEIPDQGGPQGGDMSVLYESNWDLWQQWLNNVTLKIPYMVLPGNHEASCAE 315
Query: 594 ---------AY-------------------------NFSNYRRRFTMPGGDGEGQ---YF 662
AY NF+ Y+ RF MPG + G ++
Sbjct: 316 FDGPHNILTAYLNDDIANGTAPTDNLTYYSCPPSQRNFTAYQHRFRMPGPETGGVGNFWY 375
Query: 663 SFNVGYAHIIGFSSEFYYFTNYGFKQIEN------------------------------- 749
SF+ G AH + E + + + E+
Sbjct: 376 SFDYGLAHFVSIDGETDFANSPEWNFAEDVTGNETLPSESETFITDSGPFGNVNGSVHET 435
Query: 750 ----QYNWLLNDLKEANKPENRAVRPWIIAMGHRPMYCS 854
Q++WL DL + + R+ PW+I M HRPMY S
Sbjct: 436 KSYEQWHWLQQDLAKVD----RSKTPWVIVMSHRPMYSS 470
>sp|Q05205|PPB_LYSEN Alkaline phosphatase precursor (APASE)
Length = 539
Score = 39.7 bits (91), Expect = 0.011
Identities = 38/151 (25%), Positives = 64/151 (42%), Gaps = 12/151 (7%)
Frame = +3
Query: 378 VVVGDMGNLNARSLAAIQRETEKGFYDMVLHVGD---FAYNMDSYNAQTGDQFMRQIQPV 548
VVV G++ S A Q G D+++ + F ++YN+ T ++ + P
Sbjct: 151 VVVAGAGDICDTSGNACQ-----GTSDLIVSINPTAVFTAGDNAYNSGTLSEYNSRYAPT 205
Query: 549 AAQLPYMTVP--GNHEEA-------YNFSNYRRRFTMPGGDGEGQYFSFNVGYAHIIGFS 701
+ +T P GNH+ + +++ N T P GD Y+S++VG H + +
Sbjct: 206 WGRFKALTSPSPGNHDYSTTGAKGYFDYFNGSGNQTGPAGDRSKGYYSWDVGDWHFVSLN 265
Query: 702 SEFYYFTNYGFKQIENQYNWLLNDLKEANKP 794
T G + Q +WL DL KP
Sbjct: 266 ------TMSGGTVAQAQIDWLKADLAANTKP 290
>sp|Q50644|YP77_MYCTU Hypothetical protein Rv2577/MT2654
Length = 529
Score = 38.5 bits (88), Expect = 0.024
Identities = 49/239 (20%), Positives = 80/239 (33%), Gaps = 30/239 (12%)
Frame = +3
Query: 237 QIFMHRVILPNLLPFTQYSYTVGSRFGWSEIHTFKTFPPGSNWPTRYVVVGDMG------ 398
++ ++ L NL P T Y Y E+ T +T P G P R+ GD
Sbjct: 123 EVRVNHAHLTNLTPDTDYVYAAVHDGTTPELGTARTAPSGRK-PLRFTSFGDQSTPALGR 181
Query: 399 ---------NLNARSLAAIQRETEKGFYDMVLHVGDFAY-NMDSYNAQTGDQFMRQIQPV 548
N+ + I E+ L GD Y N+ +T +
Sbjct: 182 LADGRYVSDNIGSPFAGDITIAIERIAPLFNLINGDLCYANLAQDRIRTWSDWFDNNTRS 241
Query: 549 AAQLPYMTVPGNHEE-----AYNFSNYRRRFTMPGGDG----EGQYFSFNVGYAHIIGFS 701
A P+M GNHE + Y+ F +P G ++SF G +I
Sbjct: 242 ARYRPWMPAAGNHENEVGNGPIGYDAYQTYFAVPDSGSSPQLRGLWYSFTAGSVRVISLH 301
Query: 702 SEFYYFTNYGFKQIE-----NQYNWLLNDLKEANKPENRAVRPWIIAMGHRPMYCSNSD 863
++ + + G + Q WL +L A + W++ H+ + D
Sbjct: 302 NDDVCYQDGGNSYVRGYSGGEQRRWLQAELANARRDSE---IDWVVVCMHQTAISTADD 357
>sp|P41586|PACR_HUMAN Pituitary adenylate cyclase-activating polypeptide type I receptor
precursor (PACAP type I receptor) (PACAP-R-1)
Length = 468
Score = 33.9 bits (76), Expect = 0.60
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = +3
Query: 336 FKTFPPGSNWPTRYVVVGDMGNLNARSLA---AIQRE-TEKGFYDMVLHVGDFAYNMDSY 503
F+ F P W T + D G+ N+ L+ + R TE G+ + H D A D Y
Sbjct: 81 FRIFNPDQVWETETIGESDFGDSNSLDLSDMGVVSRNCTEDGWSEPFPHYFD-ACGFDEY 139
Query: 504 NAQTGDQ 524
++TGDQ
Sbjct: 140 ESETGDQ 146
>sp|P0AC44|DHSD_ECOLI Succinate dehydrogenase hydrophobic membrane anchor protein
sp|P0AC46|DHSD_SHIFL Succinate dehydrogenase hydrophobic membrane anchor protein
sp|P0AC45|DHSD_ECOL6 Succinate dehydrogenase hydrophobic membrane anchor protein
Length = 115
Score = 33.1 bits (74), Expect = 1.0
Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Frame = +2
Query: 242 FYASSYTTEF--VAIYTIQLHCWIKIWLVRNSYI 337
F+AS++T F +A+++I +H WI +W V Y+
Sbjct: 51 FFASAFTKVFTLLALFSILIHAWIGMWQVLTDYV 84
>sp|P19274|VTPX_TTV1 Viral protein TPX
Length = 360
Score = 32.3 bits (72), Expect = 1.8
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -3
Query: 361 LEPGGKVLNV*ISDQPNLDPTV*LYCVNGNKFGSIT 254
L PG + S PN+DPT+ LY NG+ + ++T
Sbjct: 59 LSPGQSITITASSGTPNIDPTIALYYNNGSSYSNLT 94
>sp|P19275|VTP3_TTV1V Viral protein TPX
Length = 474
Score = 32.3 bits (72), Expect = 1.8
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -3
Query: 361 LEPGGKVLNV*ISDQPNLDPTV*LYCVNGNKFGSIT 254
L PG + S PN+DPT+ LY NG+ + ++T
Sbjct: 59 LSPGQSITITASSGTPNIDPTIALYYNNGSSYSNLT 94
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,571,894
Number of Sequences: 369166
Number of extensions: 2215662
Number of successful extensions: 4787
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4782
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8582957970
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)