Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_O07
(242 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P02828|HSP83_DROME Heat shock protein 83 (HSP 82) 45 7e-05
sp|Q90474|HS90A_BRARE Heat shock protein HSP 90-alpha 45 7e-05
sp|O02192|HSP83_DROAV Heat shock protein 83 (HSP 82) 45 7e-05
sp|P07901|HS90A_MOUSE Heat shock protein HSP 90-alpha (HSP ... 44 9e-05
sp|P46633|HS90A_CRIGR Heat shock protein HSP 90-alpha (HSP 86) 44 9e-05
sp|P07900|HS90A_HUMAN Heat shock protein HSP 90-alpha (HSP 86) 44 2e-04
sp|Q9GKX8|HS90B_HORSE Heat shock protein HSP 90-beta (HSP 84) 43 3e-04
sp|P08238|HS90B_HUMAN Heat shock protein HSP 90-beta (HSP 8... 43 3e-04
sp|P11499|HS90B_MOUSE Heat shock protein HSP 90-beta (HSP 8... 43 3e-04
sp|O57521|HS90B_BRARE Heat shock protein HSP 90-beta 42 3e-04
>sp|P02828|HSP83_DROME Heat shock protein 83 (HSP 82)
Length = 717
Score = 44.7 bits (104), Expect = 7e-05
Identities = 31/62 (50%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Frame = +3
Query: 3 SFGFFLKYPHVRGNRIHRKSKLGLGIEDEDVEM---DVTEAGDVSVVVSPAGEDAGEREE 173
S GF L P V +RI+R KLGLGI DED M D AGD +V EDA EE
Sbjct: 658 SSGFSLDSPQVHASRIYRMIKLGLGI-DEDEPMTTDDAQSAGDAPSLVEDT-EDASHMEE 715
Query: 174 VD 179
VD
Sbjct: 716 VD 717
>sp|Q90474|HS90A_BRARE Heat shock protein HSP 90-alpha
Length = 726
Score = 44.7 bits (104), Expect = 7e-05
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = +3
Query: 3 SFGFFLKYPHVRGNRIHRKSKLGLGIEDED-VEMDVTEAGDVSVVVSPAGEDAGEREEVD 179
S GF L P NRI+R KLGLGI+D+D V ++++ + + V +D EEVD
Sbjct: 667 SSGFTLDDPQTHANRIYRMIKLGLGIDDDDSVVEEISQPAEEDMPVLEGDDDTSRMEEVD 726
>sp|O02192|HSP83_DROAV Heat shock protein 83 (HSP 82)
Length = 716
Score = 44.7 bits (104), Expect = 7e-05
Identities = 31/62 (50%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Frame = +3
Query: 3 SFGFFLKYPHVRGNRIHRKSKLGLGIEDEDVEM---DVTEAGDVSVVVSPAGEDAGEREE 173
S GF L P V +RI+R KLGLGI DED M D AGD +V EDA EE
Sbjct: 657 SSGFSLDSPQVHASRIYRMIKLGLGI-DEDEPMTTEDAQSAGDAPSLVEDT-EDASHMEE 714
Query: 174 VD 179
VD
Sbjct: 715 VD 716
>sp|P07901|HS90A_MOUSE Heat shock protein HSP 90-alpha (HSP 86) (Tumor specific
transplantation 86 kDa antigen) (TSTA)
Length = 733
Score = 44.3 bits (103), Expect = 9e-05
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = +3
Query: 3 SFGFFLKYPHVRGNRIHRKSKLGLGIEDEDVEMDVTEAGDVSVVVSPAGEDAGER-EEVD 179
S GF L+ P NRI+R KLGLGI+++D +D T A + G+D R EEVD
Sbjct: 674 SSGFSLEDPQTHANRIYRMIKLGLGIDEDDPTVDDTSAAVTEEMPPLEGDDDTSRMEEVD 733
>sp|P46633|HS90A_CRIGR Heat shock protein HSP 90-alpha (HSP 86)
Length = 733
Score = 44.3 bits (103), Expect = 9e-05
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = +3
Query: 3 SFGFFLKYPHVRGNRIHRKSKLGLGIEDEDVEMDVTEAGDVSVVVSPAGEDAGER-EEVD 179
S GF L+ P NRI+R KLGLGI+++D +D T A + G+D R EEVD
Sbjct: 674 SSGFSLEDPQTHANRIYRMIKLGLGIDEDDPTVDDTSAAVTEEMPPLEGDDDTSRMEEVD 733
>sp|P07900|HS90A_HUMAN Heat shock protein HSP 90-alpha (HSP 86)
Length = 732
Score = 43.5 bits (101), Expect = 2e-04
Identities = 26/60 (43%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +3
Query: 3 SFGFFLKYPHVRGNRIHRKSKLGLGIEDEDVEMDVTEAGDVSVVVSPAGEDAGER-EEVD 179
S GF L+ P NRI+R KLGLGI+++D D T A + G+D R EEVD
Sbjct: 673 SSGFSLEDPQTHANRIYRMIKLGLGIDEDDPTADDTSAAVTEEMPPLEGDDDTSRMEEVD 732
>sp|Q9GKX8|HS90B_HORSE Heat shock protein HSP 90-beta (HSP 84)
Length = 724
Score = 42.7 bits (99), Expect = 3e-04
Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +3
Query: 3 SFGFFLKYPHVRGNRIHRKSKLGLGIEDEDVEMDVTEAGDVSVVVSPAG-EDAGEREEVD 179
S GF L+ P NRI+R KLGLGI++++V + A + G EDA EEVD
Sbjct: 665 SSGFSLEDPQTHSNRIYRMIKLGLGIDEDEVAAEEPSAAVPDEIPPLEGDEDASRMEEVD 724
>sp|P08238|HS90B_HUMAN Heat shock protein HSP 90-beta (HSP 84) (HSP 90)
Length = 724
Score = 42.7 bits (99), Expect = 3e-04
Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +3
Query: 3 SFGFFLKYPHVRGNRIHRKSKLGLGIEDEDVEMDVTEAGDVSVVVSPAG-EDAGEREEVD 179
S GF L+ P NRI+R KLGLGI++++V + A + G EDA EEVD
Sbjct: 665 SSGFSLEDPQTHSNRIYRMIKLGLGIDEDEVAAEEPNAAVPDEIPPLEGDEDASRMEEVD 724
>sp|P11499|HS90B_MOUSE Heat shock protein HSP 90-beta (HSP 84) (Tumor-specific
transplantation 84 kDa antigen) (TSTA)
Length = 724
Score = 42.7 bits (99), Expect = 3e-04
Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +3
Query: 3 SFGFFLKYPHVRGNRIHRKSKLGLGIEDEDVEMDVTEAGDVSVVVSPAG-EDAGEREEVD 179
S GF L+ P NRI+R KLGLGI++++V + A + G EDA EEVD
Sbjct: 665 SSGFSLEDPQTHSNRIYRMIKLGLGIDEDEVTAEEPSAAVPDEIPPLEGDEDASRMEEVD 724
>sp|O57521|HS90B_BRARE Heat shock protein HSP 90-beta
Length = 725
Score = 42.4 bits (98), Expect = 3e-04
Identities = 27/62 (43%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Frame = +3
Query: 3 SFGFFLKYPHVRGNRIHRKSKLGLGI-EDEDVEMDVTEAGDVSVVVSP--AGEDAGEREE 173
S GF L P NRI+R KLGLGI EDEDV ++ + + P +DA EE
Sbjct: 664 SSGFSLDDPQTHSNRIYRMIKLGLGIDEDEDVPVEEPTSAAAPEDIPPLEGDDDASRMEE 723
Query: 174 VD 179
VD
Sbjct: 724 VD 725
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,914,426
Number of Sequences: 369166
Number of extensions: 374738
Number of successful extensions: 1230
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1227
length of database: 68,354,980
effective HSP length: 51
effective length of database: 58,933,495
effective search space used: 1709071355
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)