Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_N23
(623 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P41931|DCOR_CAEEL Ornithine decarboxylase (ODC) 110 4e-24
sp|Q9I8S4|DCOR2_XENLA Ornithine decarboxylase 2 (ODC 2) (xO... 108 8e-24
sp|P11926|DCOR_HUMAN Ornithine decarboxylase (ODC) 100 2e-21
sp|P14019|DCOR_CRIGR Ornithine decarboxylase (ODC) 100 3e-21
sp|P27120|DCOR1_XENLA Ornithine decarboxylase 1 (ODC 1) (xO... 100 4e-21
sp|P27117|DCOR_BOVIN Ornithine decarboxylase (ODC) 100 5e-21
sp|P27118|DCOR_CHICK Ornithine decarboxylase (ODC) 98 1e-20
sp|P27119|DCOR_MUSPA Ornithine decarboxylase (ODC) 98 1e-20
sp|P00860|DCOR_MOUSE Ornithine decarboxylase (ODC) 98 1e-20
sp|P09057|DCOR_RAT Ornithine decarboxylase (ODC) 97 3e-20
>sp|P41931|DCOR_CAEEL Ornithine decarboxylase (ODC)
Length = 422
Score = 110 bits (274), Expect = 4e-24
Identities = 51/109 (46%), Positives = 70/109 (64%)
Frame = +2
Query: 2 EKGYRYVINDGVYNSFNCIVFDHAKPAPFGIFDNEGYFKEVACETETFVSTIYGPTCDGF 181
+ GY Y INDGVY SFNCI+FDHA P +FD + E F+STI+GPTCD
Sbjct: 311 DHGYMYYINDGVYGSFNCILFDHAHPIGSPLFDTD--------RNEKFMSTIWGPTCDSL 362
Query: 182 DCLIQQEPLPKMDVGNWIVWPNMGAYTIAASSCFNGIPMADVHYFMYQD 328
D + ++ +PKM+VG W+ +P+MGAYT+AA++ FNG Y M ++
Sbjct: 363 DLVEDKKLMPKMNVGEWLYYPDMGAYTLAAATTFNGFSKPVPMYVMSEE 411
>sp|Q9I8S4|DCOR2_XENLA Ornithine decarboxylase 2 (ODC 2) (xODC2)
Length = 456
Score = 108 bits (271), Expect = 8e-24
Identities = 50/105 (47%), Positives = 69/105 (65%)
Frame = +2
Query: 5 KGYRYVINDGVYNSFNCIVFDHAKPAPFGIFDNEGYFKEVACETETFVSTIYGPTCDGFD 184
K Y +NDGVY SFNC+VFDHA P P K+ + + + S+++GPTCDG D
Sbjct: 309 KSIMYYVNDGVYGSFNCLVFDHAHPKPI-------LHKKPSPDQPLYTSSLWGPTCDGLD 361
Query: 185 CLIQQEPLPKMDVGNWIVWPNMGAYTIAASSCFNGIPMADVHYFM 319
+ ++ LP++ VG+W+++ NMGAYTIAASS FNG + VHY M
Sbjct: 362 QIAERVQLPELHVGDWLLFENMGAYTIAASSNFNGFQQSPVHYAM 406
>sp|P11926|DCOR_HUMAN Ornithine decarboxylase (ODC)
Length = 461
Score = 100 bits (250), Expect = 2e-21
Identities = 46/106 (43%), Positives = 69/106 (65%)
Frame = +2
Query: 2 EKGYRYVINDGVYNSFNCIVFDHAKPAPFGIFDNEGYFKEVACETETFVSTIYGPTCDGF 181
E+ + Y +NDGVY SFNCI++DHA P K + + + S+I+GPTCDG
Sbjct: 311 EQTFMYYVNDGVYGSFNCILYDHAHVKPL-------LQKRPKPDEKYYSSSIWGPTCDGL 363
Query: 182 DCLIQQEPLPKMDVGNWIVWPNMGAYTIAASSCFNGIPMADVHYFM 319
D ++++ LP+M VG+W+++ NMGAYT+AA+S FNG ++Y M
Sbjct: 364 DRIVERCDLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPTIYYVM 409
>sp|P14019|DCOR_CRIGR Ornithine decarboxylase (ODC)
Length = 455
Score = 100 bits (249), Expect = 3e-21
Identities = 46/106 (43%), Positives = 69/106 (65%)
Frame = +2
Query: 2 EKGYRYVINDGVYNSFNCIVFDHAKPAPFGIFDNEGYFKEVACETETFVSTIYGPTCDGF 181
E+ + Y +NDGVY SFNCI++DHA P K + + + S+I+GPTCDG
Sbjct: 305 EQTFMYYVNDGVYGSFNCILYDHAHVKPL-------LPKRPKPDEKYYSSSIWGPTCDGL 357
Query: 182 DCLIQQEPLPKMDVGNWIVWPNMGAYTIAASSCFNGIPMADVHYFM 319
D ++++ LP+M VG+W+++ NMGAYT+AA+S FNG ++Y M
Sbjct: 358 DRIVERCNLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPSIYYVM 403
>sp|P27120|DCOR1_XENLA Ornithine decarboxylase 1 (ODC 1) (xODC1)
Length = 460
Score = 100 bits (248), Expect = 4e-21
Identities = 46/106 (43%), Positives = 69/106 (65%)
Frame = +2
Query: 2 EKGYRYVINDGVYNSFNCIVFDHAKPAPFGIFDNEGYFKEVACETETFVSTIYGPTCDGF 181
+K Y +NDGVY SFNCI+FDHA P K+ + + + S+I+GPTCDG
Sbjct: 312 DKTLMYYVNDGVYGSFNCILFDHAHVKPV-------LTKKPKPDEKFYSSSIWGPTCDGL 364
Query: 182 DCLIQQEPLPKMDVGNWIVWPNMGAYTIAASSCFNGIPMADVHYFM 319
D ++++ LP++ VG+W+++ NMGAYT+AA+S FNG ++Y M
Sbjct: 365 DRIVERFELPELQVGDWMLFENMGAYTVAAASTFNGFQRPTLYYVM 410
>sp|P27117|DCOR_BOVIN Ornithine decarboxylase (ODC)
Length = 461
Score = 99.8 bits (247), Expect = 5e-21
Identities = 45/106 (42%), Positives = 69/106 (65%)
Frame = +2
Query: 2 EKGYRYVINDGVYNSFNCIVFDHAKPAPFGIFDNEGYFKEVACETETFVSTIYGPTCDGF 181
++ + Y +NDGVY SFNCI++DHA P K + + + S+I+GPTCDG
Sbjct: 311 DRTFMYYVNDGVYGSFNCILYDHAHVKPL-------LQKRPKPDEKYYSSSIWGPTCDGL 363
Query: 182 DCLIQQEPLPKMDVGNWIVWPNMGAYTIAASSCFNGIPMADVHYFM 319
D ++++ LP+M VG+W+++ NMGAYT+AA+S FNG ++Y M
Sbjct: 364 DRIVERCNLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPTIYYVM 409
>sp|P27118|DCOR_CHICK Ornithine decarboxylase (ODC)
Length = 450
Score = 98.2 bits (243), Expect = 1e-20
Identities = 45/106 (42%), Positives = 66/106 (62%)
Frame = +2
Query: 2 EKGYRYVINDGVYNSFNCIVFDHAKPAPFGIFDNEGYFKEVACETETFVSTIYGPTCDGF 181
+K Y +NDGVY SFNCI++DHA P K + + +I+GPTCDG
Sbjct: 301 DKTLMYYVNDGVYGSFNCILYDHAHVKPV-------LQKRPKPDDGCYSCSIWGPTCDGL 353
Query: 182 DCLIQQEPLPKMDVGNWIVWPNMGAYTIAASSCFNGIPMADVHYFM 319
D ++++ +P++ VG+WI++ NMGAYT+AA+S FNG +HY M
Sbjct: 354 DRIVERCNMPELQVGDWILFENMGAYTVAAASTFNGFQRPTIHYVM 399
>sp|P27119|DCOR_MUSPA Ornithine decarboxylase (ODC)
Length = 461
Score = 98.2 bits (243), Expect = 1e-20
Identities = 45/106 (42%), Positives = 69/106 (65%)
Frame = +2
Query: 2 EKGYRYVINDGVYNSFNCIVFDHAKPAPFGIFDNEGYFKEVACETETFVSTIYGPTCDGF 181
E+ + Y +NDGVY SFNCI++DHA K + + + S+I+GPTCDG
Sbjct: 311 EQTFMYYVNDGVYGSFNCILYDHAHVKAL-------LQKRPKPDEKYYSSSIWGPTCDGL 363
Query: 182 DCLIQQEPLPKMDVGNWIVWPNMGAYTIAASSCFNGIPMADVHYFM 319
D ++++ LP+M VG+W+++ NMGAYT+AA+S FNG +++Y M
Sbjct: 364 DRIVERCNLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPNIYYVM 409
>sp|P00860|DCOR_MOUSE Ornithine decarboxylase (ODC)
Length = 461
Score = 98.2 bits (243), Expect = 1e-20
Identities = 45/106 (42%), Positives = 69/106 (65%)
Frame = +2
Query: 2 EKGYRYVINDGVYNSFNCIVFDHAKPAPFGIFDNEGYFKEVACETETFVSTIYGPTCDGF 181
E+ + Y +NDGVY SFNCI++DHA K + + + S+I+GPTCDG
Sbjct: 311 EQTFMYYVNDGVYGSFNCILYDHAHVKAL-------LQKRPKPDEKYYSSSIWGPTCDGL 363
Query: 182 DCLIQQEPLPKMDVGNWIVWPNMGAYTIAASSCFNGIPMADVHYFM 319
D ++++ LP+M VG+W+++ NMGAYT+AA+S FNG +++Y M
Sbjct: 364 DRIVERCNLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPNIYYVM 409
>sp|P09057|DCOR_RAT Ornithine decarboxylase (ODC)
Length = 461
Score = 97.1 bits (240), Expect = 3e-20
Identities = 45/106 (42%), Positives = 68/106 (64%)
Frame = +2
Query: 2 EKGYRYVINDGVYNSFNCIVFDHAKPAPFGIFDNEGYFKEVACETETFVSTIYGPTCDGF 181
E+ Y +NDGVY SFNCI++DHA K + + + S+I+GPTCDG
Sbjct: 311 EQTLMYYVNDGVYGSFNCILYDHAHVKAL-------LQKRPKPDEKYYSSSIWGPTCDGL 363
Query: 182 DCLIQQEPLPKMDVGNWIVWPNMGAYTIAASSCFNGIPMADVHYFM 319
D ++++ LP+M VG+W+++ NMGAYT+AA+S FNG +++Y M
Sbjct: 364 DRIVERCSLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPNIYYVM 409
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,090,940
Number of Sequences: 369166
Number of extensions: 1490008
Number of successful extensions: 2853
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2819
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 4926080070
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)