Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_N10
(279 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P24051|RS27L_RAT 40S ribosomal protein S27-like protein ... 117 1e-26
sp|Q71TY3|RS27_RAT 40S ribosomal protein S27 >gi|51316667|s... 117 1e-26
sp|P47904|RS27_XENLA 40S ribosomal protein S27 117 1e-26
sp|P55833|RS27_HOMAM 40S ribosomal protein S27 113 2e-25
sp|Q8L953|RS27D_ARATH 40S ribosomal protein S27-4 107 7e-24
sp|Q96564|RS27_HORVU 40S ribosomal protein S27 (Manganese e... 105 3e-23
sp|O74330|RS27_SCHPO 40S ribosomal protein S27 104 6e-23
sp|O64650|RS27A_ARATH 40S ribosomal protein S27-1 102 3e-22
sp|Q9M2F1|RS27B_ARATH 40S ribosomal protein S27-2 102 4e-22
sp|P47903|RS27_CHLRE 40S ribosomal protein S27 97 2e-20
>sp|P24051|RS27L_RAT 40S ribosomal protein S27-like protein
sp|Q6ZWY3|RS27L_MOUSE 40S ribosomal protein S27-like protein
sp|Q71UM5|RS27L_HUMAN 40S ribosomal protein S27-like protein
Length = 84
Score = 117 bits (292), Expect = 1e-26
Identities = 53/79 (67%), Positives = 59/79 (74%)
Frame = +1
Query: 16 DYLHPXXXXXXXXXXXXRLVPSPNSYFMDVKCPGCLKITTIFSHAHSVVMCSGCTRTLCQ 195
D LHP RLV SPNSYFMDVKCPGC KITT+FSHA +VV+C GC+ LCQ
Sbjct: 6 DLLHPSLEEEKKKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQ 65
Query: 196 PTGGKARLMEGCSFRKKQN 252
PTGGKARL EGCSFR+KQ+
Sbjct: 66 PTGGKARLTEGCSFRRKQH 84
>sp|Q71TY3|RS27_RAT 40S ribosomal protein S27
sp|Q6ZWU9|RS27_MOUSE 40S ribosomal protein S27
sp|P42677|RS27_HUMAN 40S ribosomal protein S27 (Metallopan-stimulin 1) (MPS-1)
Length = 84
Score = 117 bits (292), Expect = 1e-26
Identities = 53/79 (67%), Positives = 59/79 (74%)
Frame = +1
Query: 16 DYLHPXXXXXXXXXXXXRLVPSPNSYFMDVKCPGCLKITTIFSHAHSVVMCSGCTRTLCQ 195
D LHP RLV SPNSYFMDVKCPGC KITT+FSHA +VV+C GC+ LCQ
Sbjct: 6 DLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQ 65
Query: 196 PTGGKARLMEGCSFRKKQN 252
PTGGKARL EGCSFR+KQ+
Sbjct: 66 PTGGKARLTEGCSFRRKQH 84
>sp|P47904|RS27_XENLA 40S ribosomal protein S27
Length = 84
Score = 117 bits (292), Expect = 1e-26
Identities = 53/79 (67%), Positives = 59/79 (74%)
Frame = +1
Query: 16 DYLHPXXXXXXXXXXXXRLVPSPNSYFMDVKCPGCLKITTIFSHAHSVVMCSGCTRTLCQ 195
D LHP RLV SPNSYFMDVKCPGC KITT+FSHA +VV+C GC+ LCQ
Sbjct: 6 DLLHPTPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQ 65
Query: 196 PTGGKARLMEGCSFRKKQN 252
PTGGKARL EGCSFR+KQ+
Sbjct: 66 PTGGKARLTEGCSFRRKQH 84
>sp|P55833|RS27_HOMAM 40S ribosomal protein S27
Length = 84
Score = 113 bits (282), Expect = 2e-25
Identities = 51/79 (64%), Positives = 56/79 (70%)
Frame = +1
Query: 16 DYLHPXXXXXXXXXXXXRLVPSPNSYFMDVKCPGCLKITTIFSHAHSVVMCSGCTRTLCQ 195
D LHP RLV PNSYFMDVKCPGC KI+T+FSHA +VV C GC LCQ
Sbjct: 6 DLLHPSPSEEKRKCKLKRLVQHPNSYFMDVKCPGCFKISTVFSHAQTVVACVGCATVLCQ 65
Query: 196 PTGGKARLMEGCSFRKKQN 252
PTGGKA+L +GCSFRKKQN
Sbjct: 66 PTGGKAKLTDGCSFRKKQN 84
>sp|Q8L953|RS27D_ARATH 40S ribosomal protein S27-4
Length = 84
Score = 107 bits (268), Expect = 7e-24
Identities = 49/78 (62%), Positives = 54/78 (69%)
Frame = +1
Query: 13 IDYLHPXXXXXXXXXXXXRLVPSPNSYFMDVKCPGCLKITTIFSHAHSVVMCSGCTRTLC 192
ID LHP RLV SPNS+FMDVKC GC ITT+FSH+ +VV+C C LC
Sbjct: 7 IDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLC 66
Query: 193 QPTGGKARLMEGCSFRKK 246
QPTGGKARL EGCSFRKK
Sbjct: 67 QPTGGKARLQEGCSFRKK 84
>sp|Q96564|RS27_HORVU 40S ribosomal protein S27 (Manganese efficiency related protein 1)
Length = 86
Score = 105 bits (262), Expect = 3e-23
Identities = 48/78 (61%), Positives = 55/78 (70%)
Frame = +1
Query: 13 IDYLHPXXXXXXXXXXXXRLVPSPNSYFMDVKCPGCLKITTIFSHAHSVVMCSGCTRTLC 192
ID L+P RLV SPNS+FMDVKC GC ITT+FSH+ +VV+C GC LC
Sbjct: 7 IDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPGCQTVLC 66
Query: 193 QPTGGKARLMEGCSFRKK 246
QPTGGKARL EGCSFR+K
Sbjct: 67 QPTGGKARLTEGCSFRRK 84
>sp|O74330|RS27_SCHPO 40S ribosomal protein S27
Length = 83
Score = 104 bits (260), Expect = 6e-23
Identities = 46/78 (58%), Positives = 54/78 (69%)
Frame = +1
Query: 13 IDYLHPXXXXXXXXXXXXRLVPSPNSYFMDVKCPGCLKITTIFSHAHSVVMCSGCTRTLC 192
+D L+P +LV P S+FMDVKCPGC ITT+FSHA +VV+C C LC
Sbjct: 5 VDLLNPSHESEMRKHKLKQLVQGPRSFFMDVKCPGCFNITTVFSHAQTVVICGSCASVLC 64
Query: 193 QPTGGKARLMEGCSFRKK 246
QPTGGKARLMEGCSFR+K
Sbjct: 65 QPTGGKARLMEGCSFRRK 82
>sp|O64650|RS27A_ARATH 40S ribosomal protein S27-1
Length = 84
Score = 102 bits (254), Expect = 3e-22
Identities = 47/78 (60%), Positives = 53/78 (67%)
Frame = +1
Query: 13 IDYLHPXXXXXXXXXXXXRLVPSPNSYFMDVKCPGCLKITTIFSHAHSVVMCSGCTRTLC 192
ID L+P RLV SPNS+FMDVKC GC ITT+FSH+ +VVMC C LC
Sbjct: 7 IDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGNCQTLLC 66
Query: 193 QPTGGKARLMEGCSFRKK 246
PTGGKA+L EGCSFRKK
Sbjct: 67 TPTGGKAKLTEGCSFRKK 84
>sp|Q9M2F1|RS27B_ARATH 40S ribosomal protein S27-2
Length = 86
Score = 102 bits (253), Expect = 4e-22
Identities = 46/78 (58%), Positives = 54/78 (69%)
Frame = +1
Query: 13 IDYLHPXXXXXXXXXXXXRLVPSPNSYFMDVKCPGCLKITTIFSHAHSVVMCSGCTRTLC 192
ID L+P RLV SPNS+FMDVKC GC ITT+FSH+ +VV+C C LC
Sbjct: 7 IDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTILC 66
Query: 193 QPTGGKARLMEGCSFRKK 246
QPTGGKA+L EGCSFR+K
Sbjct: 67 QPTGGKAKLTEGCSFRRK 84
>sp|P47903|RS27_CHLRE 40S ribosomal protein S27
Length = 86
Score = 96.7 bits (239), Expect = 2e-20
Identities = 44/80 (55%), Positives = 52/80 (65%)
Frame = +1
Query: 13 IDYLHPXXXXXXXXXXXXRLVPSPNSYFMDVKCPGCLKITTIFSHAHSVVMCSGCTRTLC 192
ID L+P RLV SPNS+FMDVKC GC ITT+FSH+ +VVMC C+ LC
Sbjct: 7 IDLLNPPAELEKTKHKRKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGSCSSVLC 66
Query: 193 QPTGGKARLMEGCSFRKKQN 252
PTG RL EGCSFR+K +
Sbjct: 67 TPTGWPRRLTEGCSFRRKSD 86
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,048,192
Number of Sequences: 369166
Number of extensions: 523598
Number of successful extensions: 978
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 68,354,980
effective HSP length: 62
effective length of database: 56,901,410
effective search space used: 1707042300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)