Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_M23
(776 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P19889|RLA0_DROME 60S acidic ribosomal protein P0 (DNA-(... 234 3e-61
sp|Q90YX1|RLA0_ICTPU 60S acidic ribosomal protein P0 (L10E) 230 3e-60
sp|Q9U3U0|RLA0_CERCA 60S acidic ribosomal protein P0 (CcP0) 230 3e-60
sp|P05388|RLA0_HUMAN 60S acidic ribosomal protein P0 (L10E) 228 1e-59
sp|Q9PV90|RLA0_BRARE 60S acidic ribosomal protein P0 (L10E) 228 1e-59
sp|P19945|RLA0_RAT 60S acidic ribosomal protein P0 (L10E) 228 2e-59
sp|P47826|RLA0_CHICK 60S acidic ribosomal protein P0 (L10E) 228 2e-59
sp|Q9DG68|RLA0_RANSY 60S acidic ribosomal protein P0 (L10E) 227 2e-59
sp|Q93572|RLA0_CAEEL 60S acidic ribosomal protein P0 226 4e-59
sp|Q95140|RLA0_BOVIN 60S acidic ribosomal protein P0 (L10E) 226 7e-59
>sp|P19889|RLA0_DROME 60S acidic ribosomal protein P0 (DNA-(apurinic or apyrimidinic
site) lyase) (Apurinic-apyrimidinic endonuclease)
Length = 317
Score = 234 bits (596), Expect = 3e-61
Identities = 114/204 (55%), Positives = 148/204 (72%)
Frame = +3
Query: 24 NPDLLKLFPHLKGNVGFVFTNGDLNAVKDIILSQKIQAPAKADAVAPVSVMVPKQLTTLG 203
NP L KL PH+KGNVGFVFT GDL V+D +L K++APA+ A+AP+ V++P Q T LG
Sbjct: 72 NPQLEKLLPHIKGNVGFVFTKGDLAEVRDKLLESKVRAPARPGAIAPLHVIIPAQNTGLG 131
Query: 204 PEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQSEAQLLQMLKIFPFQYGLKIQQ 383
PEKTSFFQAL IPTKI++GTIEIINDV ++K GD V SEA LL ML I PF YGL + Q
Sbjct: 132 PEKTSFFQALSIPTKISKGTIEIINDVPILKPGDKVGASEATLLNMLNISPFSYGLIVNQ 191
Query: 384 IYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALNKPTLASVPHIIANTIKAVIGL 563
+Y++GS +SP+ LDI +D+ F + +AAV L++ PT+AS PH IAN K ++ +
Sbjct: 192 VYDSGSIFSPEILDIKPEDLRAKFQQGVANLAAVCLSVGYPTIASAPHSIANGFKNLLAI 251
Query: 564 SVVTDYNLKEAEGIKEYLKDPTKF 635
+ T+ KEA IKEY+KDP+KF
Sbjct: 252 AATTEVEFKEATTIKEYIKDPSKF 275
>sp|Q90YX1|RLA0_ICTPU 60S acidic ribosomal protein P0 (L10E)
Length = 317
Score = 230 bits (587), Expect = 3e-60
Identities = 116/204 (56%), Positives = 149/204 (73%)
Frame = +3
Query: 24 NPDLLKLFPHLKGNVGFVFTNGDLNAVKDIILSQKIQAPAKADAVAPVSVMVPKQLTTLG 203
NP L KL PH++GNVGFVFT DL V+D++L+ K+ A A+A A+AP V VP Q T LG
Sbjct: 72 NPALEKLLPHIRGNVGFVFTKEDLPEVRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLG 131
Query: 204 PEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQSEAQLLQMLKIFPFQYGLKIQQ 383
PEKTSFFQAL I TKI+RGTIEI++DV LI+ GD V SEA LL ML I PF YGL IQQ
Sbjct: 132 PEKTSFFQALGITTKISRGTIEILSDVQLIRPGDKVGASEATLLNMLNISPFSYGLIIQQ 191
Query: 384 IYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALNKPTLASVPHIIANTIKAVIGL 563
+Y+NGS YSP+ LDITED + + F+E + +A+V L + PTLAS+PH I N K V+ +
Sbjct: 192 VYDNGSVYSPEVLDITEDALHKRFLEGVRNIASVCLQIGYPTLASIPHSIINGYKRVLRV 251
Query: 564 SVVTDYNLKEAEGIKEYLKDPTKF 635
+V TDY+ A+ +K +L DP++F
Sbjct: 252 AVETDYSFPMADKVKAFLADPSRF 275
>sp|Q9U3U0|RLA0_CERCA 60S acidic ribosomal protein P0 (CcP0)
Length = 317
Score = 230 bits (587), Expect = 3e-60
Identities = 114/204 (55%), Positives = 147/204 (72%)
Frame = +3
Query: 24 NPDLLKLFPHLKGNVGFVFTNGDLNAVKDIILSQKIQAPAKADAVAPVSVMVPKQLTTLG 203
N L KL PH+KGNVGFVFT GDL V+D +L K++APA+A A+AP+ V++P Q T LG
Sbjct: 72 NAQLEKLLPHIKGNVGFVFTKGDLAEVRDKLLESKVRAPARAGAIAPLPVIIPAQNTGLG 131
Query: 204 PEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQSEAQLLQMLKIFPFQYGLKIQQ 383
PEKTSFFQAL IPTKI++GTIEIINDV ++K GD V SEA LL ML I PF YGL I Q
Sbjct: 132 PEKTSFFQALSIPTKISKGTIEIINDVPILKPGDKVGASEATLLNMLNISPFSYGLAITQ 191
Query: 384 IYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALNKPTLASVPHIIANTIKAVIGL 563
+Y++GS +SP+ LDI +D+ F +AAVSL + PT+AS PH IAN K ++ +
Sbjct: 192 VYDSGSIFSPEILDIKPEDLRAKFQAGVANLAAVSLQIGYPTIASAPHSIANGFKNLLAI 251
Query: 564 SVVTDYNLKEAEGIKEYLKDPTKF 635
+ T+ K+A IKE++KDP+KF
Sbjct: 252 AASTEVEFKQAATIKEFIKDPSKF 275
>sp|P05388|RLA0_HUMAN 60S acidic ribosomal protein P0 (L10E)
Length = 317
Score = 228 bits (581), Expect = 1e-59
Identities = 116/204 (56%), Positives = 146/204 (71%)
Frame = +3
Query: 24 NPDLLKLFPHLKGNVGFVFTNGDLNAVKDIILSQKIQAPAKADAVAPVSVMVPKQLTTLG 203
NP L KL PH++GNVGFVFT DL ++D++L+ K+ A A+A A+AP V VP Q T LG
Sbjct: 72 NPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLG 131
Query: 204 PEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQSEAQLLQMLKIFPFQYGLKIQQ 383
PEKTSFFQAL I TKI+RGTIEI++DV LIK GD V SEA LL ML I PF +GL IQQ
Sbjct: 132 PEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLVIQQ 191
Query: 384 IYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALNKPTLASVPHIIANTIKAVIGL 563
+++NGS Y+P+ LDITE+ + F+E + VA+V L + PT+ASVPH I N K V+ L
Sbjct: 192 VFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLAL 251
Query: 564 SVVTDYNLKEAEGIKEYLKDPTKF 635
SV TDY AE +K +L DP+ F
Sbjct: 252 SVETDYTFPLAEKVKAFLADPSAF 275
>sp|Q9PV90|RLA0_BRARE 60S acidic ribosomal protein P0 (L10E)
Length = 319
Score = 228 bits (581), Expect = 1e-59
Identities = 118/207 (57%), Positives = 147/207 (71%), Gaps = 3/207 (1%)
Frame = +3
Query: 24 NPDLLKLFPHLKGNVGFVFTNGDLNAVKDIILSQKIQAPAKADAVAPVSVMVPKQLTTLG 203
NP L +L PH++GNVGFVFT DL V+D++L+ K+ A A+A A+AP V VP Q T LG
Sbjct: 72 NPALERLLPHIRGNVGFVFTKEDLTEVRDLLLANKVPAAARAGAIAPCEVTVPAQNTGLG 131
Query: 204 PEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQSEAQL---LQMLKIFPFQYGLK 374
PEKTSFFQAL I TKI+RGTIEI++DV LIK GD V SEA L L ML I PF YGL
Sbjct: 132 PEKTSFFQALGITTKISRGTIEILSDVQLIKPGDKVGASEATLLNMLNMLNISPFSYGLI 191
Query: 375 IQQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALNKPTLASVPHIIANTIKAV 554
IQQ+Y+NGS YSP+ LDITED + + F++ + +A+V L + PTLAS+PH I N K V
Sbjct: 192 IQQVYDNGSVYSPEVLDITEDALHKRFLKGVRNIASVCLQIGYPTLASIPHTIINGYKRV 251
Query: 555 IGLSVVTDYNLKEAEGIKEYLKDPTKF 635
+ ++V TDY AE +K YL DPT F
Sbjct: 252 LAVTVETDYTFPLAEKVKAYLADPTAF 278
>sp|P19945|RLA0_RAT 60S acidic ribosomal protein P0 (L10E)
Length = 317
Score = 228 bits (580), Expect = 2e-59
Identities = 117/204 (57%), Positives = 145/204 (71%)
Frame = +3
Query: 24 NPDLLKLFPHLKGNVGFVFTNGDLNAVKDIILSQKIQAPAKADAVAPVSVMVPKQLTTLG 203
NP L KL PH++GNVGFVFT DL ++D++L+ K+ A A+A A+AP V VP Q T LG
Sbjct: 72 NPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLG 131
Query: 204 PEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQSEAQLLQMLKIFPFQYGLKIQQ 383
PEKTSFFQAL I TKI+RGTIEI++DV LIK GD V SEA LL ML I PF +GL IQQ
Sbjct: 132 PEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLIIQQ 191
Query: 384 IYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALNKPTLASVPHIIANTIKAVIGL 563
+++NGS YSP+ LDITE + F+E + VA+V L + PT+ASVPH I N K V+ L
Sbjct: 192 VFDNGSIYSPEVLDITEQALHTRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLAL 251
Query: 564 SVVTDYNLKEAEGIKEYLKDPTKF 635
SV TDY AE +K +L DP+ F
Sbjct: 252 SVETDYTFPLAEKVKAFLADPSAF 275
>sp|P47826|RLA0_CHICK 60S acidic ribosomal protein P0 (L10E)
Length = 316
Score = 228 bits (580), Expect = 2e-59
Identities = 114/204 (55%), Positives = 147/204 (72%)
Frame = +3
Query: 24 NPDLLKLFPHLKGNVGFVFTNGDLNAVKDIILSQKIQAPAKADAVAPVSVMVPKQLTTLG 203
NP L KL PH++GNVGFVFT DL ++D++L+ K+ A A+A A+AP V VP Q T LG
Sbjct: 72 NPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCDVTVPAQNTGLG 131
Query: 204 PEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQSEAQLLQMLKIFPFQYGLKIQQ 383
PEKTSFFQAL I TKI+RGTIEI++DV LIK GD V SEA LL ML I PF +GL IQQ
Sbjct: 132 PEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLVIQQ 191
Query: 384 IYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALNKPTLASVPHIIANTIKAVIGL 563
+++NGS Y+P+ LDITE+ + + F+E + VA+V L + PT+ASVPH I N K V+ +
Sbjct: 192 VFDNGSIYNPEVLDITEETLHKRFLEGVRNVASVCLQIGYPTIASVPHSIVNGYKRVLAV 251
Query: 564 SVVTDYNLKEAEGIKEYLKDPTKF 635
+V TDY AE +K +L DP+ F
Sbjct: 252 AVETDYTFPLAEKVKAFLADPSAF 275
>sp|Q9DG68|RLA0_RANSY 60S acidic ribosomal protein P0 (L10E)
Length = 315
Score = 227 bits (579), Expect = 2e-59
Identities = 116/204 (56%), Positives = 146/204 (71%)
Frame = +3
Query: 24 NPDLLKLFPHLKGNVGFVFTNGDLNAVKDIILSQKIQAPAKADAVAPVSVMVPKQLTTLG 203
N L KL PH+KGNVGFVFT DL V+D++L+ K+ A A+A A+AP V VP Q T LG
Sbjct: 72 NSALEKLLPHIKGNVGFVFTKEDLAEVRDMLLANKVPASARAGAIAPCDVTVPAQNTGLG 131
Query: 204 PEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQSEAQLLQMLKIFPFQYGLKIQQ 383
PEKTSFFQAL I TKI+RGTIEI++DV LIK GD V SEA LL ML I PF +GL IQQ
Sbjct: 132 PEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLIIQQ 191
Query: 384 IYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALNKPTLASVPHIIANTIKAVIGL 563
+Y+NGS YSP+ LDITED + F+E + +A+V L + PT+ASVPH + N K V+ L
Sbjct: 192 VYDNGSIYSPEVLDITEDALRARFLEGVRNIASVCLQIGYPTVASVPHSVVNGYKRVLAL 251
Query: 564 SVVTDYNLKEAEGIKEYLKDPTKF 635
+V TDY+ A+ +K +L DP+ F
Sbjct: 252 AVETDYSFPLADKVKAFLADPSAF 275
>sp|Q93572|RLA0_CAEEL 60S acidic ribosomal protein P0
Length = 312
Score = 226 bits (577), Expect = 4e-59
Identities = 111/204 (54%), Positives = 150/204 (73%)
Frame = +3
Query: 24 NPDLLKLFPHLKGNVGFVFTNGDLNAVKDIILSQKIQAPAKADAVAPVSVMVPKQLTTLG 203
NP L KL PH+ NVGFVFT DL ++ +L + APAKA A+AP V +P Q T +G
Sbjct: 72 NPSLEKLLPHIVENVGFVFTKEDLGEIRSKLLENRKGAPAKAGAIAPCDVKLPPQNTGMG 131
Query: 204 PEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQSEAQLLQMLKIFPFQYGLKIQQ 383
PEKTSFFQALQIPTKI RGTIEI+NDV LIK GD V SE+ LL ML + PF YGL ++Q
Sbjct: 132 PEKTSFFQALQIPTKIARGTIEILNDVHLIKEGDKVGASESALLNMLGVTPFSYGLVVRQ 191
Query: 384 IYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALNKPTLASVPHIIANTIKAVIGL 563
+Y++G+ Y+P+ LD+T +++ + F+ + VA+VSLA+N PTLASV H +AN ++ ++G+
Sbjct: 192 VYDDGTLYTPEVLDMTTEELRKRFLSGVRNVASVSLAVNYPTLASVAHSLANGLQNMLGV 251
Query: 564 SVVTDYNLKEAEGIKEYLKDPTKF 635
+ VTD + KEAE IK ++ DP+KF
Sbjct: 252 AAVTDVSFKEAETIKAFIADPSKF 275
>sp|Q95140|RLA0_BOVIN 60S acidic ribosomal protein P0 (L10E)
Length = 309
Score = 226 bits (575), Expect = 7e-59
Identities = 115/204 (56%), Positives = 145/204 (71%)
Frame = +3
Query: 24 NPDLLKLFPHLKGNVGFVFTNGDLNAVKDIILSQKIQAPAKADAVAPVSVMVPKQLTTLG 203
NP L KL PH++GNVGFVFT DL ++D++L+ K+ A A+A A+AP V VP Q T LG
Sbjct: 63 NPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLG 122
Query: 204 PEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQSEAQLLQMLKIFPFQYGLKIQQ 383
PEKTSFFQAL I TKI+RGTIEI++DV LIK GD SEA LL ML I PF +GL IQQ
Sbjct: 123 PEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKEGASEATLLNMLNISPFSFGLVIQQ 182
Query: 384 IYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALNKPTLASVPHIIANTIKAVIGL 563
+++NGS Y+P+ LDITE+ + F+E + VA+V L + PT+ASVPH I N K V+ L
Sbjct: 183 VFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLAL 242
Query: 564 SVVTDYNLKEAEGIKEYLKDPTKF 635
SV TDY AE +K +L DP+ F
Sbjct: 243 SVETDYTFPLAEKVKAFLADPSAF 266
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,958,437
Number of Sequences: 369166
Number of extensions: 1396652
Number of successful extensions: 3719
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3702
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7260540000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)