Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_M22
(843 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P67962|KC1A_CHICK Casein kinase I, alpha isoform (CKI-al... 434 e-121
sp|P48729|KC1A_HUMAN Casein kinase I, alpha isoform (CKI-al... 434 e-121
sp|P67829|KC1A_SHEEP Casein kinase I, alpha isoform (CKI-al... 434 e-121
sp|P97633|KC1A_RAT Casein kinase I, alpha isoform (CKI-alph... 432 e-121
sp|P42168|YKL1_CAEEL Putative casein kinase I C03C10.1 in c... 425 e-119
sp|Q8N752|KC1AL_HUMAN Casein kinase I, alpha-like isoform (... 416 e-116
sp|P54367|KC1A_DROME Casein kinase I, alpha isoform (CKI-al... 397 e-110
sp|Q06486|KC1D_RAT Casein kinase I, delta isoform (CKI-delt... 384 e-106
sp|P48730|KC1D_HUMAN Casein kinase I, delta isoform (CKI-de... 384 e-106
sp|P40235|HHP1_SCHPO Casein kinase I homolog hhp1 383 e-106
>sp|P67962|KC1A_CHICK Casein kinase I, alpha isoform (CKI-alpha) (CK1)
sp|P67963|KC1A_XENLA Casein kinase I, alpha isoform (CKI-alpha) (CK1)
Length = 337
Score = 434 bits (1115), Expect = e-121
Identities = 203/263 (77%), Positives = 232/263 (88%)
Frame = +3
Query: 54 DFVVAAKWRLVRKIGSGSFGDIYLGVAVSNGEEVAVKLESVNARHPQLLYESKVYKFLQD 233
+F+V K++LVRKIGSGSFGDIYL + ++NGEEVAVKLES ARHPQLLYESK+YK LQ
Sbjct: 10 EFIVGGKYKLVRKIGSGSFGDIYLAINITNGEEVAVKLESQKARHPQLLYESKLYKILQG 69
Query: 234 GVGIPRIRWYGFDGVKNQYNALVMDLLGPSLEDLFNFCGRRFTMKTVLMLAEQMLTRVEF 413
GVGIP IRWYG + YN LVMDLLGPSLEDLFNFC RRFTMKTVLMLA+QM++R+E+
Sbjct: 70 GVGIPHIRWYGQE---KDYNVLVMDLLGPSLEDLFNFCSRRFTMKTVLMLADQMISRIEY 126
Query: 414 IHSKNFIHRDIKPDNFLMGIGRHCNKLFVVDFGLSKKYKDTKTKAHIPYREDKNLTGTAR 593
+H+KNFIHRDIKPDNFLMGIGRHCNKLF++DFGL+KKY+D +T+ HIPYREDKNLTGTAR
Sbjct: 127 VHTKNFIHRDIKPDNFLMGIGRHCNKLFLIDFGLAKKYRDNRTRQHIPYREDKNLTGTAR 186
Query: 594 YASINAHAGIEQSRRDDMESMGYVFMYFLRSTLPWQGLKANNKKQKYERIYEKKRSTPIE 773
YASINAH GIEQSRRDDMES+GYV MYF R++LPWQGLKA KKQKYE+I EKK STP+E
Sbjct: 187 YASINAHLGIEQSRRDDMESLGYVLMYFNRTSLPWQGLKAATKKQKYEKISEKKMSTPVE 246
Query: 774 VLCKSFPPEFAFYLEYCRNLKFD 842
VLCK FP EFA YL YCR L+F+
Sbjct: 247 VLCKGFPAEFAMYLNYCRGLRFE 269
>sp|P48729|KC1A_HUMAN Casein kinase I, alpha isoform (CKI-alpha) (CK1)
sp|Q8BK63|KC1A_MOUSE Casein kinase I, alpha isoform (CKI-alpha) (CK1)
Length = 337
Score = 434 bits (1115), Expect = e-121
Identities = 203/263 (77%), Positives = 232/263 (88%)
Frame = +3
Query: 54 DFVVAAKWRLVRKIGSGSFGDIYLGVAVSNGEEVAVKLESVNARHPQLLYESKVYKFLQD 233
+F+V K++LVRKIGSGSFGDIYL + ++NGEEVAVKLES ARHPQLLYESK+YK LQ
Sbjct: 10 EFIVGGKYKLVRKIGSGSFGDIYLAINITNGEEVAVKLESQKARHPQLLYESKLYKILQG 69
Query: 234 GVGIPRIRWYGFDGVKNQYNALVMDLLGPSLEDLFNFCGRRFTMKTVLMLAEQMLTRVEF 413
GVGIP IRWYG + YN LVMDLLGPSLEDLFNFC RRFTMKTVLMLA+QM++R+E+
Sbjct: 70 GVGIPHIRWYGQE---KDYNVLVMDLLGPSLEDLFNFCSRRFTMKTVLMLADQMISRIEY 126
Query: 414 IHSKNFIHRDIKPDNFLMGIGRHCNKLFVVDFGLSKKYKDTKTKAHIPYREDKNLTGTAR 593
+H+KNFIHRDIKPDNFLMGIGRHCNKLF++DFGL+KKY+D +T+ HIPYREDKNLTGTAR
Sbjct: 127 VHTKNFIHRDIKPDNFLMGIGRHCNKLFLIDFGLAKKYRDNRTRQHIPYREDKNLTGTAR 186
Query: 594 YASINAHAGIEQSRRDDMESMGYVFMYFLRSTLPWQGLKANNKKQKYERIYEKKRSTPIE 773
YASINAH GIEQSRRDDMES+GYV MYF R++LPWQGLKA KKQKYE+I EKK STP+E
Sbjct: 187 YASINAHLGIEQSRRDDMESLGYVLMYFNRTSLPWQGLKAATKKQKYEKISEKKMSTPVE 246
Query: 774 VLCKSFPPEFAFYLEYCRNLKFD 842
VLCK FP EFA YL YCR L+F+
Sbjct: 247 VLCKGFPAEFAMYLNYCRGLRFE 269
>sp|P67829|KC1A_SHEEP Casein kinase I, alpha isoform (CKI-alpha) (CK1)
sp|P67828|KC1A_RABIT Casein kinase I, alpha isoform (CKI-alpha) (CK1)
sp|P67827|KC1A_BOVIN Casein kinase I, alpha isoform (CKI-alpha) (CK1)
Length = 325
Score = 434 bits (1115), Expect = e-121
Identities = 203/263 (77%), Positives = 232/263 (88%)
Frame = +3
Query: 54 DFVVAAKWRLVRKIGSGSFGDIYLGVAVSNGEEVAVKLESVNARHPQLLYESKVYKFLQD 233
+F+V K++LVRKIGSGSFGDIYL + ++NGEEVAVKLES ARHPQLLYESK+YK LQ
Sbjct: 10 EFIVGGKYKLVRKIGSGSFGDIYLAINITNGEEVAVKLESQKARHPQLLYESKLYKILQG 69
Query: 234 GVGIPRIRWYGFDGVKNQYNALVMDLLGPSLEDLFNFCGRRFTMKTVLMLAEQMLTRVEF 413
GVGIP IRWYG + YN LVMDLLGPSLEDLFNFC RRFTMKTVLMLA+QM++R+E+
Sbjct: 70 GVGIPHIRWYGQE---KDYNVLVMDLLGPSLEDLFNFCSRRFTMKTVLMLADQMISRIEY 126
Query: 414 IHSKNFIHRDIKPDNFLMGIGRHCNKLFVVDFGLSKKYKDTKTKAHIPYREDKNLTGTAR 593
+H+KNFIHRDIKPDNFLMGIGRHCNKLF++DFGL+KKY+D +T+ HIPYREDKNLTGTAR
Sbjct: 127 VHTKNFIHRDIKPDNFLMGIGRHCNKLFLIDFGLAKKYRDNRTRQHIPYREDKNLTGTAR 186
Query: 594 YASINAHAGIEQSRRDDMESMGYVFMYFLRSTLPWQGLKANNKKQKYERIYEKKRSTPIE 773
YASINAH GIEQSRRDDMES+GYV MYF R++LPWQGLKA KKQKYE+I EKK STP+E
Sbjct: 187 YASINAHLGIEQSRRDDMESLGYVLMYFNRTSLPWQGLKAATKKQKYEKISEKKMSTPVE 246
Query: 774 VLCKSFPPEFAFYLEYCRNLKFD 842
VLCK FP EFA YL YCR L+F+
Sbjct: 247 VLCKGFPAEFAMYLNYCRGLRFE 269
>sp|P97633|KC1A_RAT Casein kinase I, alpha isoform (CKI-alpha) (CK1)
Length = 325
Score = 432 bits (1112), Expect = e-121
Identities = 203/263 (77%), Positives = 231/263 (87%)
Frame = +3
Query: 54 DFVVAAKWRLVRKIGSGSFGDIYLGVAVSNGEEVAVKLESVNARHPQLLYESKVYKFLQD 233
+F+V K++LVRKIGSGSFGDIYL + ++NGEEVAVKLES ARHPQLLYESK+YK LQ
Sbjct: 10 EFIVGGKYKLVRKIGSGSFGDIYLAINITNGEEVAVKLESQKARHPQLLYESKLYKILQG 69
Query: 234 GVGIPRIRWYGFDGVKNQYNALVMDLLGPSLEDLFNFCGRRFTMKTVLMLAEQMLTRVEF 413
GVGIP IRWYG YN LVMDLLGPSLEDLFNFC RRFTMKTVLMLA+QM++R+E+
Sbjct: 70 GVGIPHIRWYGQG---KDYNVLVMDLLGPSLEDLFNFCSRRFTMKTVLMLADQMISRIEY 126
Query: 414 IHSKNFIHRDIKPDNFLMGIGRHCNKLFVVDFGLSKKYKDTKTKAHIPYREDKNLTGTAR 593
+H+KNFIHRDIKPDNFLMGIGRHCNKLF++DFGL+KKY+D +T+ HIPYREDKNLTGTAR
Sbjct: 127 VHTKNFIHRDIKPDNFLMGIGRHCNKLFLIDFGLAKKYRDNRTRQHIPYREDKNLTGTAR 186
Query: 594 YASINAHAGIEQSRRDDMESMGYVFMYFLRSTLPWQGLKANNKKQKYERIYEKKRSTPIE 773
YASINAH GIEQSRRDDMES+GYV MYF R++LPWQGLKA KKQKYE+I EKK STP+E
Sbjct: 187 YASINAHLGIEQSRRDDMESLGYVLMYFNRTSLPWQGLKAATKKQKYEKISEKKMSTPVE 246
Query: 774 VLCKSFPPEFAFYLEYCRNLKFD 842
VLCK FP EFA YL YCR L+F+
Sbjct: 247 VLCKGFPAEFAMYLNYCRGLRFE 269
>sp|P42168|YKL1_CAEEL Putative casein kinase I C03C10.1 in chromosome III
Length = 341
Score = 425 bits (1092), Expect = e-119
Identities = 200/263 (76%), Positives = 228/263 (86%)
Frame = +3
Query: 54 DFVVAAKWRLVRKIGSGSFGDIYLGVAVSNGEEVAVKLESVNARHPQLLYESKVYKFLQD 233
DF+VA K++L+RKIGSGSFGDIY+ + V+NGEEVA+KLES ARHPQLLYESKVY+ LQ
Sbjct: 9 DFIVATKYKLIRKIGSGSFGDIYVSINVTNGEEVAIKLESNRARHPQLLYESKVYRILQG 68
Query: 234 GVGIPRIRWYGFDGVKNQYNALVMDLLGPSLEDLFNFCGRRFTMKTVLMLAEQMLTRVEF 413
GVGIP IRWYG + +YN LVMDLLGPSLEDLFNFC RRFTMKTVLMLA+QM+ R+E+
Sbjct: 69 GVGIPHIRWYG---TEREYNVLVMDLLGPSLEDLFNFCSRRFTMKTVLMLADQMIGRIEY 125
Query: 414 IHSKNFIHRDIKPDNFLMGIGRHCNKLFVVDFGLSKKYKDTKTKAHIPYREDKNLTGTAR 593
+H KNFIHRDIKPDNFLMGIGRHCNKLF++DFGL+KKY+D++T+ HIPYREDKNLTGTAR
Sbjct: 126 VHVKNFIHRDIKPDNFLMGIGRHCNKLFLIDFGLAKKYRDSRTRTHIPYREDKNLTGTAR 185
Query: 594 YASINAHAGIEQSRRDDMESMGYVFMYFLRSTLPWQGLKANNKKQKYERIYEKKRSTPIE 773
YASINAH GIEQSRRDDMES+GYV MYF R TLPWQGLKA KKQKYE+I EKK +T +E
Sbjct: 186 YASINAHLGIEQSRRDDMESLGYVLMYFNRGTLPWQGLKAATKKQKYEKISEKKMTTSVE 245
Query: 774 VLCKSFPPEFAFYLEYCRNLKFD 842
LCK FP EF YL Y R L+FD
Sbjct: 246 HLCKGFPAEFPMYLSYTRGLRFD 268
>sp|Q8N752|KC1AL_HUMAN Casein kinase I, alpha-like isoform (CKI-alpha-like) (CK1)
Length = 337
Score = 416 bits (1068), Expect = e-116
Identities = 193/263 (73%), Positives = 225/263 (85%)
Frame = +3
Query: 54 DFVVAAKWRLVRKIGSGSFGDIYLGVAVSNGEEVAVKLESVNARHPQLLYESKVYKFLQD 233
+ VV K++LVRKIGSGSFGD+YLG+ +NGEEVAVKLES +HPQLLYESK+Y LQ
Sbjct: 10 ELVVGGKYKLVRKIGSGSFGDVYLGITTTNGEEVAVKLESQKVKHPQLLYESKLYTILQG 69
Query: 234 GVGIPRIRWYGFDGVKNQYNALVMDLLGPSLEDLFNFCGRRFTMKTVLMLAEQMLTRVEF 413
GVGIP + WYG + N LVMDLLGPSLEDLFNFC RRFTMKTVLMLA+QM++R+E+
Sbjct: 70 GVGIPHMHWYGQE---KDNNVLVMDLLGPSLEDLFNFCSRRFTMKTVLMLADQMISRIEY 126
Query: 414 IHSKNFIHRDIKPDNFLMGIGRHCNKLFVVDFGLSKKYKDTKTKAHIPYREDKNLTGTAR 593
+H+KNF+HRDIKPDNFLMG GRHCNKLF++DFGL+KKY+D +T+ HIPYREDK+L GT R
Sbjct: 127 VHTKNFLHRDIKPDNFLMGTGRHCNKLFLIDFGLAKKYRDNRTRQHIPYREDKHLIGTVR 186
Query: 594 YASINAHAGIEQSRRDDMESMGYVFMYFLRSTLPWQGLKANNKKQKYERIYEKKRSTPIE 773
YASINAH GIEQSRRDDMES+GYVFMYF R++LPWQGLKA KKQKYE+I EKK STP+E
Sbjct: 187 YASINAHLGIEQSRRDDMESLGYVFMYFNRTSLPWQGLKAMTKKQKYEKISEKKMSTPVE 246
Query: 774 VLCKSFPPEFAFYLEYCRNLKFD 842
VLCK FP EFA YL YCR L+F+
Sbjct: 247 VLCKGFPAEFAMYLNYCRGLRFE 269
>sp|P54367|KC1A_DROME Casein kinase I, alpha isoform (CKI-alpha) (DmCK1)
Length = 337
Score = 397 bits (1019), Expect = e-110
Identities = 186/263 (70%), Positives = 223/263 (84%)
Frame = +3
Query: 54 DFVVAAKWRLVRKIGSGSFGDIYLGVAVSNGEEVAVKLESVNARHPQLLYESKVYKFLQD 233
+ +V K+R++RKIGSGSFGDIYLG+++ +GEEVA+K+ES +ARHPQLLYE+K+Y+ L
Sbjct: 13 EIIVGGKYRVIRKIGSGSFGDIYLGMSIQSGEEVAIKMESAHARHPQLLYEAKLYRILSG 72
Query: 234 GVGIPRIRWYGFDGVKNQYNALVMDLLGPSLEDLFNFCGRRFTMKTVLMLAEQMLTRVEF 413
GVG PRIR +G + +N LVMDLLGPSLEDLFNFC R FT+KTVLML +QM+ R+E+
Sbjct: 73 GVGFPRIRHHGKE---KNFNTLVMDLLGPSLEDLFNFCTRHFTIKTVLMLVDQMIGRLEY 129
Query: 414 IHSKNFIHRDIKPDNFLMGIGRHCNKLFVVDFGLSKKYKDTKTKAHIPYREDKNLTGTAR 593
IH K FIHRDIKPDNFLMGIGRHCNKLF++DFGL+KK++D T+ HI YREDKNLTGTAR
Sbjct: 130 IHLKCFIHRDIKPDNFLMGIGRHCNKLFLIDFGLAKKFRDPHTRHHIVYREDKNLTGTAR 189
Query: 594 YASINAHAGIEQSRRDDMESMGYVFMYFLRSTLPWQGLKANNKKQKYERIYEKKRSTPIE 773
YASINAH GIEQSRRDDMES+GYV MYF R LPWQG+KAN K+QKYE+I EKK STPIE
Sbjct: 190 YASINAHLGIEQSRRDDMESLGYVMMYFNRGVLPWQGMKANTKQQKYEKISEKKMSTPIE 249
Query: 774 VLCKSFPPEFAFYLEYCRNLKFD 842
VLCK P EF+ YL YCR+L+F+
Sbjct: 250 VLCKGSPAEFSMYLNYCRSLRFE 272
>sp|Q06486|KC1D_RAT Casein kinase I, delta isoform (CKI-delta)
sp|Q9DC28|KC1D_MOUSE Casein kinase I, delta isoform (CKI-delta) (CKId)
Length = 415
Score = 384 bits (986), Expect = e-106
Identities = 179/260 (68%), Positives = 218/260 (83%)
Frame = +3
Query: 63 VAAKWRLVRKIGSGSFGDIYLGVAVSNGEEVAVKLESVNARHPQLLYESKVYKFLQDGVG 242
V ++RL RKIGSGSFGDIYLG ++ GEEVA+KLE V +HPQL ESK+YK +Q GVG
Sbjct: 5 VGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVG 64
Query: 243 IPRIRWYGFDGVKNQYNALVMDLLGPSLEDLFNFCGRRFTMKTVLMLAEQMLTRVEFIHS 422
IP IRW G +G YN +VM+LLGPSLEDLFNFC R+F++KTVL+LA+QM++R+E+IHS
Sbjct: 65 IPTIRWCGAEG---DYNVMVMELLGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHS 121
Query: 423 KNFIHRDIKPDNFLMGIGRHCNKLFVVDFGLSKKYKDTKTKAHIPYREDKNLTGTARYAS 602
KNFIHRD+KPDNFLMG+G+ N ++++DFGL+KKY+D +T HIPYRE+KNLTGTARYAS
Sbjct: 122 KNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYAS 181
Query: 603 INAHAGIEQSRRDDMESMGYVFMYFLRSTLPWQGLKANNKKQKYERIYEKKRSTPIEVLC 782
IN H GIEQSRRDD+ES+GYV MYF +LPWQGLKA K+QKYERI EKK STPIEVLC
Sbjct: 182 INTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLC 241
Query: 783 KSFPPEFAFYLEYCRNLKFD 842
K +P EFA YL +CR+L+FD
Sbjct: 242 KGYPSEFATYLNFCRSLRFD 261
>sp|P48730|KC1D_HUMAN Casein kinase I, delta isoform (CKI-delta) (CKId)
Length = 415
Score = 384 bits (986), Expect = e-106
Identities = 179/260 (68%), Positives = 218/260 (83%)
Frame = +3
Query: 63 VAAKWRLVRKIGSGSFGDIYLGVAVSNGEEVAVKLESVNARHPQLLYESKVYKFLQDGVG 242
V ++RL RKIGSGSFGDIYLG ++ GEEVA+KLE V +HPQL ESK+YK +Q GVG
Sbjct: 5 VGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVG 64
Query: 243 IPRIRWYGFDGVKNQYNALVMDLLGPSLEDLFNFCGRRFTMKTVLMLAEQMLTRVEFIHS 422
IP IRW G +G YN +VM+LLGPSLEDLFNFC R+F++KTVL+LA+QM++R+E+IHS
Sbjct: 65 IPTIRWCGAEG---DYNVMVMELLGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHS 121
Query: 423 KNFIHRDIKPDNFLMGIGRHCNKLFVVDFGLSKKYKDTKTKAHIPYREDKNLTGTARYAS 602
KNFIHRD+KPDNFLMG+G+ N ++++DFGL+KKY+D +T HIPYRE+KNLTGTARYAS
Sbjct: 122 KNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYAS 181
Query: 603 INAHAGIEQSRRDDMESMGYVFMYFLRSTLPWQGLKANNKKQKYERIYEKKRSTPIEVLC 782
IN H GIEQSRRDD+ES+GYV MYF +LPWQGLKA K+QKYERI EKK STPIEVLC
Sbjct: 182 INTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLC 241
Query: 783 KSFPPEFAFYLEYCRNLKFD 842
K +P EFA YL +CR+L+FD
Sbjct: 242 KGYPSEFATYLNFCRSLRFD 261
>sp|P40235|HHP1_SCHPO Casein kinase I homolog hhp1
Length = 365
Score = 383 bits (984), Expect = e-106
Identities = 180/263 (68%), Positives = 220/263 (83%)
Frame = +3
Query: 54 DFVVAAKWRLVRKIGSGSFGDIYLGVAVSNGEEVAVKLESVNARHPQLLYESKVYKFLQD 233
D + K+R+ RKIGSGSFGDIYLG V +GEEVA+KLES A+HPQL YE +VY+ L
Sbjct: 4 DLRIGNKYRIGRKIGSGSFGDIYLGTNVVSGEEVAIKLESTRAKHPQLEYEYRVYRILSG 63
Query: 234 GVGIPRIRWYGFDGVKNQYNALVMDLLGPSLEDLFNFCGRRFTMKTVLMLAEQMLTRVEF 413
GVGIP +RW+G V+ YNA+VMDLLGPSLEDLFNFC R+F++KTVL+LA+Q+++R+EF
Sbjct: 64 GVGIPFVRWFG---VECDYNAMVMDLLGPSLEDLFNFCNRKFSLKTVLLLADQLISRIEF 120
Query: 414 IHSKNFIHRDIKPDNFLMGIGRHCNKLFVVDFGLSKKYKDTKTKAHIPYREDKNLTGTAR 593
IHSK+F+HRDIKPDNFLMGIG+ N++ ++DFGL+KKY+D KT HIPYRE+KNLTGTAR
Sbjct: 121 IHSKSFLHRDIKPDNFLMGIGKRGNQVNIIDFGLAKKYRDHKTHLHIPYRENKNLTGTAR 180
Query: 594 YASINAHAGIEQSRRDDMESMGYVFMYFLRSTLPWQGLKANNKKQKYERIYEKKRSTPIE 773
YASIN H GIEQSRRDD+ES+GYV +YF R +LPWQGLKA KKQKYE+I EKK STP E
Sbjct: 181 YASINTHLGIEQSRRDDLESLGYVLVYFCRGSLPWQGLKATTKKQKYEKIMEKKISTPTE 240
Query: 774 VLCKSFPPEFAFYLEYCRNLKFD 842
VLC+ FP EF+ YL Y R+L+FD
Sbjct: 241 VLCRGFPQEFSIYLNYTRSLRFD 263
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,687,617
Number of Sequences: 369166
Number of extensions: 1861109
Number of successful extensions: 7851
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7131
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8245425915
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)