Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_M20
(355 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q04832|HEXP_LEIMA DNA-binding protein HEXBP (Hexamer-bin... 109 2e-24
sp|P53849|GIS2_YEAST Zinc-finger protein GIS2 105 3e-23
sp|O42395|CNBP_CHICK Cellular nucleic acid binding protein ... 93 2e-19
sp|P53996|CNBP_MOUSE Cellular nucleic acid binding protein ... 92 5e-19
sp|P62634|CNBP_RAT Cellular nucleic acid binding protein (C... 91 1e-18
sp|P36627|BYR3_SCHPO Cellular nucleic acid binding protein ... 87 9e-18
sp|Q8WW36|ZCH13_HUMAN Zinc finger CCHC domain containing pr... 86 2e-17
sp|P34689|GLH1_CAEEL ATP-dependent RNA helicase glh-1 (Germ... 80 1e-15
sp|Q966L9|GLH2_CAEEL ATP-dependent RNA helicase glh-2 (Germ... 80 2e-15
sp|Q9HFF2|YL92_SCHPO Hypothetical protein C683.02c in chrom... 68 7e-12
>sp|Q04832|HEXP_LEIMA DNA-binding protein HEXBP (Hexamer-binding protein)
Length = 271
Score = 109 bits (272), Expect = 2e-24
Identities = 47/100 (47%), Positives = 62/100 (62%), Gaps = 6/100 (6%)
Frame = +3
Query: 21 CYNCHETGHMSRECPKQRN--QGSRNNGCYKCGENGHMARDCTQEGGNDRQERQIKCYNC 194
CY C + GH+SR+CP + G+ + CYKCG+ GH++RDC G KCY C
Sbjct: 142 CYKCGDAGHISRDCPNGQGGYSGAGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRKCYKC 201
Query: 195 NQNGHMSRECPN----GQSDKKCYKCNKVGHMSRDCNE*G 302
++GHMSRECP+ G D+ CYKC K GH+SR+C E G
Sbjct: 202 GESGHMSRECPSAGSTGSGDRACYKCGKPGHISRECPEAG 241
Score = 105 bits (262), Expect = 3e-23
Identities = 51/123 (41%), Positives = 65/123 (52%), Gaps = 24/123 (19%)
Frame = +3
Query: 18 ECYNCHETGHMSRECPKQRNQGSR------------------NNGCYKCGENGHMARDCT 143
ECY C + GH+SR+CP + GSR + CYKCG+ GH++RDC
Sbjct: 98 ECYKCGQEGHLSRDCPSSQG-GSRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDCP 156
Query: 144 QEGGNDRQERQIKCYNCNQNGHMSRECPNGQ------SDKKCYKCNKVGHMSRDCNE*GS 305
G CY C GH+SR+CPNGQ D+KCYKC + GHMSR+C GS
Sbjct: 157 NGQGGYSGAGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRKCYKCGESGHMSRECPSAGS 216
Query: 306 IGT 314
G+
Sbjct: 217 TGS 219
Score = 103 bits (258), Expect = 9e-23
Identities = 45/101 (44%), Positives = 60/101 (59%), Gaps = 11/101 (10%)
Frame = +3
Query: 21 CYNCHETGHMSRECPKQRN--QGSRNNGCYKCGENGHMARDCTQEGGNDRQERQIKCYNC 194
CY C + GH+SR+CP + G+ + CYKCGE+GHM+R+C G +R CY C
Sbjct: 170 CYKCGDAGHISRDCPNGQGGYSGAGDRKCYKCGESGHMSRECPSAGSTGSGDRA--CYKC 227
Query: 195 NQNGHMSRECPN---------GQSDKKCYKCNKVGHMSRDC 290
+ GH+SRECP G D+ CYKC + GH+SRDC
Sbjct: 228 GKPGHISRECPEAGGSYGGSRGGGDRTCYKCGEAGHISRDC 268
Score = 103 bits (256), Expect = 2e-22
Identities = 47/118 (39%), Positives = 62/118 (52%), Gaps = 22/118 (18%)
Frame = +3
Query: 3 NQRSTECYNCHETGHMSRECPKQRNQGSRN-NGCYKCGENGHMARDCTQEGGNDRQERQI 179
++RST C+ C E GHMSRECP + G+ C++CGE GHM+RDC +
Sbjct: 39 DERSTTCFRCGEEGHMSRECPNEARSGAAGAMTCFRCGEAGHMSRDC-PNSAKPGAAKGF 97
Query: 180 KCYNCNQNGHMSRECPNGQ---------------------SDKKCYKCNKVGHMSRDC 290
+CY C Q GH+SR+CP+ Q D+ CYKC GH+SRDC
Sbjct: 98 ECYKCGQEGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDC 155
Score = 99.4 bits (246), Expect = 2e-21
Identities = 43/101 (42%), Positives = 61/101 (60%), Gaps = 6/101 (5%)
Frame = +3
Query: 6 QRSTECYNCHETGHMSRECPKQRNQG-SRNNGCYKCGENGHMARDCTQEGGNDRQERQIK 182
+ ST C NC + GH +RECP+ ++G R+ C++CGE GHM+R+C E +
Sbjct: 13 ESSTSCRNCGKEGHYARECPEADSKGDERSTTCFRCGEEGHMSRECPNE-ARSGAAGAMT 71
Query: 183 CYNCNQNGHMSRECPNGQSDK-----KCYKCNKVGHMSRDC 290
C+ C + GHMSR+CPN +CYKC + GH+SRDC
Sbjct: 72 CFRCGEAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDC 112
Score = 87.0 bits (214), Expect = 1e-17
Identities = 35/74 (47%), Positives = 49/74 (66%), Gaps = 3/74 (4%)
Frame = +3
Query: 18 ECYNCHETGHMSRECPKQRNQGSRNNGCYKCGENGHMARDCTQEGGN---DRQERQIKCY 188
+CY C E+GHMSRECP + GS + CYKCG+ GH++R+C + GG+ R CY
Sbjct: 197 KCYKCGESGHMSRECPSAGSTGSGDRACYKCGKPGHISRECPEAGGSYGGSRGGGDRTCY 256
Query: 189 NCNQNGHMSRECPN 230
C + GH+SR+CP+
Sbjct: 257 KCGEAGHISRDCPS 270
Score = 76.6 bits (187), Expect = 2e-14
Identities = 37/96 (38%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Frame = +3
Query: 48 MSRECPKQRNQGSRNNGCYKCGENGHMARDCTQEGGNDRQERQIKCYNCNQNGHMSRECP 227
MS +R + + C CG+ GH AR+C E + ER C+ C + GHMSRECP
Sbjct: 1 MSETEDVKRPRTESSTSCRNCGKEGHYARECP-EADSKGDERSTTCFRCGEEGHMSRECP 59
Query: 228 N-----GQSDKKCYKCNKVGHMSRDCNE*GSIGTAK 320
N C++C + GHMSRDC G AK
Sbjct: 60 NEARSGAAGAMTCFRCGEAGHMSRDCPNSAKPGAAK 95
>sp|P53849|GIS2_YEAST Zinc-finger protein GIS2
Length = 153
Score = 105 bits (262), Expect = 3e-23
Identities = 45/91 (49%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
Frame = +3
Query: 21 CYNCHETGHMSRECPKQRNQGSRNN-GCYKCGENGHMARDCTQEGGNDRQERQIKCYNCN 197
C+NC++TGH+SRECP+ + + CYKCG HMA+DC +E G +KCY C
Sbjct: 67 CFNCNQTGHISRECPEPKKTSRFSKVSCYKCGGPNHMAKDCMKEDGISG----LKCYTCG 122
Query: 198 QNGHMSRECPNGQSDKKCYKCNKVGHMSRDC 290
Q GHMSR+C Q+D+ CY CN+ GH+S+DC
Sbjct: 123 QAGHMSRDC---QNDRLCYNCNETGHISKDC 150
Score = 86.3 bits (212), Expect = 2e-17
Identities = 38/95 (40%), Positives = 52/95 (54%), Gaps = 5/95 (5%)
Frame = +3
Query: 21 CYNCHETGHMSRECPKQRNQGSRNNGCYKCGENGHMARDCTQEGGNDRQERQIKCYNCNQ 200
CYNC++ GH+ +C R + CY CGE GH+ +CT + +C+NCNQ
Sbjct: 25 CYNCNKPGHVQTDCTMPRTVEFKQ--CYNCGETGHVRSECTVQ----------RCFNCNQ 72
Query: 201 NGHMSRECPNGQ-----SDKKCYKCNKVGHMSRDC 290
GH+SRECP + S CYKC HM++DC
Sbjct: 73 TGHISRECPEPKKTSRFSKVSCYKCGGPNHMAKDC 107
Score = 75.1 bits (183), Expect = 5e-14
Identities = 33/92 (35%), Positives = 50/92 (54%)
Frame = +3
Query: 21 CYNCHETGHMSRECPKQRNQGSRNNGCYKCGENGHMARDCTQEGGNDRQERQIKCYNCNQ 200
CY C + GH++ +C +R CY C + GH+ DCT R +CYNC +
Sbjct: 6 CYVCGKIGHLAEDCDSERL-------CYNCNKPGHVQTDCTMP----RTVEFKQCYNCGE 54
Query: 201 NGHMSRECPNGQSDKKCYKCNKVGHMSRDCNE 296
GH+ EC + ++C+ CN+ GH+SR+C E
Sbjct: 55 TGHVRSEC----TVQRCFNCNQTGHISRECPE 82
Score = 44.7 bits (104), Expect = 7e-05
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = +3
Query: 174 QIKCYNCNQNGHMSRECPNGQSDKKCYKCNKVGHMSRDC 290
Q CY C + GH++ +C S++ CY CNK GH+ DC
Sbjct: 3 QKACYVCGKIGHLAEDC---DSERLCYNCNKPGHVQTDC 38
Score = 38.1 bits (87), Expect = 0.006
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +3
Query: 6 QRSTECYNCHETGHMSRECPK 68
Q CYNC+ETGH+S++CPK
Sbjct: 132 QNDRLCYNCNETGHISKDCPK 152
Score = 32.3 bits (72), Expect = 0.34
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 237 SDKKCYKCNKVGHMSRDCN 293
S K CY C K+GH++ DC+
Sbjct: 2 SQKACYVCGKIGHLAEDCD 20
>sp|O42395|CNBP_CHICK Cellular nucleic acid binding protein (CNBP) (Zinc finger protein
9)
Length = 172
Score = 92.8 bits (229), Expect = 2e-19
Identities = 45/128 (35%), Positives = 69/128 (53%), Gaps = 33/128 (25%)
Frame = +3
Query: 12 STECYNCHETGHMSRECPKQ--RNQGSRNNG--------------CYKCGENGHMARDCT 143
S EC+ C TGH +RECP R +G R+ G CY+CGE+GH+A+DC
Sbjct: 3 SNECFKCGRTGHWARECPTGIGRGRGMRSRGRAGFQFMSSSLPDICYRCGESGHLAKDCD 62
Query: 144 QE----------GGN-------DRQERQIKCYNCNQNGHMSRECPNGQSDKKCYKCNKVG 272
+ GG+ ++ER+ CYNC + GH++R+C + ++KCY C + G
Sbjct: 63 LQEDKACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHA-DEQKCYSCGEFG 121
Query: 273 HMSRDCNE 296
H+ +DC +
Sbjct: 122 HIQKDCTK 129
Score = 82.8 bits (203), Expect = 2e-16
Identities = 36/106 (33%), Positives = 60/106 (56%), Gaps = 11/106 (10%)
Frame = +3
Query: 6 QRSTECYNCHETGHMSRECPKQRNQGSRNNGCYKCGENGHMARDCTQ----------EGG 155
Q CYNC GH++++C + + + R CY CG+ GH+ARDC E G
Sbjct: 64 QEDKACYNCGRGGHIAKDCKEPKRE--REQCCYNCGKPGHLARDCDHADEQKCYSCGEFG 121
Query: 156 NDRQE-RQIKCYNCNQNGHMSRECPNGQSDKKCYKCNKVGHMSRDC 290
+ +++ ++KCY C + GH++ C S+ CY+C + GH++R+C
Sbjct: 122 HIQKDCTKVKCYRCGETGHVAINCSK-TSEVNCYRCGESGHLAREC 166
Score = 52.0 bits (123), Expect = 4e-07
Identities = 21/44 (47%), Positives = 29/44 (65%)
Frame = +3
Query: 18 ECYNCHETGHMSRECPKQRNQGSRNNGCYKCGENGHMARDCTQE 149
+CY C ETGH++ C K + CY+CGE+GH+AR+CT E
Sbjct: 131 KCYRCGETGHVAINCSK-----TSEVNCYRCGESGHLARECTIE 169
Score = 28.9 bits (63), Expect = 3.8
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +3
Query: 237 SDKKCYKCNKVGHMSRDC 290
S +C+KC + GH +R+C
Sbjct: 2 SSNECFKCGRTGHWAREC 19
>sp|P53996|CNBP_MOUSE Cellular nucleic acid binding protein (CNBP) (Zinc finger protein
9)
Length = 178
Score = 91.7 bits (226), Expect = 5e-19
Identities = 35/92 (38%), Positives = 59/92 (64%)
Frame = +3
Query: 21 CYNCHETGHMSRECPKQRNQGSRNNGCYKCGENGHMARDCTQEGGNDRQERQIKCYNCNQ 200
CY C E+GH++++C Q ++ CY CG GH+A+DC + ++ER+ CYNC +
Sbjct: 54 CYRCGESGHLAKDCDLQEDEA-----CYNCGRGGHIAKDCKEP----KREREQCCYNCGK 104
Query: 201 NGHMSRECPNGQSDKKCYKCNKVGHMSRDCNE 296
GH++R+C + ++KCY C + GH+ +DC +
Sbjct: 105 PGHLARDCDHA-DEQKCYSCGEFGHIQKDCTK 135
Score = 91.3 bits (225), Expect = 6e-19
Identities = 44/118 (37%), Positives = 65/118 (55%), Gaps = 24/118 (20%)
Frame = +3
Query: 12 STECYNCHETGHMSRECPK--QRNQGSRNNG--------------------CYKCGENGH 125
S EC+ C +GH +RECP R +G R+ G CY+CGE+GH
Sbjct: 3 SNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGH 62
Query: 126 MARDCTQEGGNDRQERQIKCYNCNQNGHMSREC--PNGQSDKKCYKCNKVGHMSRDCN 293
+A+DC D QE + CYNC + GH++++C P + ++ CY C K GH++RDC+
Sbjct: 63 LAKDC------DLQEDE-ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCD 113
Score = 82.8 bits (203), Expect = 2e-16
Identities = 36/106 (33%), Positives = 60/106 (56%), Gaps = 11/106 (10%)
Frame = +3
Query: 6 QRSTECYNCHETGHMSRECPKQRNQGSRNNGCYKCGENGHMARDCTQ----------EGG 155
Q CYNC GH++++C + + + R CY CG+ GH+ARDC E G
Sbjct: 70 QEDEACYNCGRGGHIAKDCKEPKRE--REQCCYNCGKPGHLARDCDHADEQKCYSCGEFG 127
Query: 156 NDRQE-RQIKCYNCNQNGHMSRECPNGQSDKKCYKCNKVGHMSRDC 290
+ +++ ++KCY C + GH++ C S+ CY+C + GH++R+C
Sbjct: 128 HIQKDCTKVKCYRCGETGHVAINCSK-TSEVNCYRCGESGHLAREC 172
Score = 67.8 bits (164), Expect = 7e-12
Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 20/89 (22%)
Frame = +3
Query: 90 NNGCYKCGENGHMARDCTQEGGNDRQERQIK--------------------CYNCNQNGH 209
+N C+KCG +GH AR+C GG R R CY C ++GH
Sbjct: 3 SNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGH 62
Query: 210 MSRECPNGQSDKKCYKCNKVGHMSRDCNE 296
++++C + Q D+ CY C + GH+++DC E
Sbjct: 63 LAKDC-DLQEDEACYNCGRGGHIAKDCKE 90
Score = 52.0 bits (123), Expect = 4e-07
Identities = 21/44 (47%), Positives = 29/44 (65%)
Frame = +3
Query: 18 ECYNCHETGHMSRECPKQRNQGSRNNGCYKCGENGHMARDCTQE 149
+CY C ETGH++ C K + CY+CGE+GH+AR+CT E
Sbjct: 137 KCYRCGETGHVAINCSK-----TSEVNCYRCGESGHLARECTIE 175
Score = 28.9 bits (63), Expect = 3.8
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 237 SDKKCYKCNKVGHMSRDCNE*GSIG 311
S +C+KC + GH +R+C G G
Sbjct: 2 SSNECFKCGRSGHWARECPTGGGRG 26
>sp|P62634|CNBP_RAT Cellular nucleic acid binding protein (CNBP) (Zinc finger protein
9)
sp|P62633|CNBP_HUMAN Cellular nucleic acid binding protein (CNBP) (Zinc finger protein
9)
Length = 177
Score = 90.5 bits (223), Expect = 1e-18
Identities = 35/92 (38%), Positives = 58/92 (63%)
Frame = +3
Query: 21 CYNCHETGHMSRECPKQRNQGSRNNGCYKCGENGHMARDCTQEGGNDRQERQIKCYNCNQ 200
CY C E+GH++++C Q + CY CG GH+A+DC + ++ER+ CYNC +
Sbjct: 54 CYRCGESGHLAKDCDLQED------ACYNCGRGGHIAKDCKEP----KREREQCCYNCGK 103
Query: 201 NGHMSRECPNGQSDKKCYKCNKVGHMSRDCNE 296
GH++R+C + ++KCY C + GH+ +DC +
Sbjct: 104 PGHLARDCDHA-DEQKCYSCGEFGHIQKDCTK 134
Score = 90.1 bits (222), Expect = 1e-18
Identities = 44/118 (37%), Positives = 64/118 (54%), Gaps = 24/118 (20%)
Frame = +3
Query: 12 STECYNCHETGHMSRECPK--QRNQGSRNNG--------------------CYKCGENGH 125
S EC+ C +GH +RECP R +G R+ G CY+CGE+GH
Sbjct: 3 SNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGH 62
Query: 126 MARDCTQEGGNDRQERQIKCYNCNQNGHMSREC--PNGQSDKKCYKCNKVGHMSRDCN 293
+A+DC D QE CYNC + GH++++C P + ++ CY C K GH++RDC+
Sbjct: 63 LAKDC------DLQED--ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCD 112
Score = 82.0 bits (201), Expect = 4e-16
Identities = 35/95 (36%), Positives = 53/95 (55%)
Frame = +3
Query: 6 QRSTECYNCHETGHMSRECPKQRNQGSRNNGCYKCGENGHMARDCTQEGGNDRQERQIKC 185
+R CYNC + GH++R+C Q CY CGE GH+ +DCT+ +KC
Sbjct: 93 EREQCCYNCGKPGHLARDCDHADEQK-----CYSCGEFGHIQKDCTK----------VKC 137
Query: 186 YNCNQNGHMSRECPNGQSDKKCYKCNKVGHMSRDC 290
Y C + GH++ C S+ CY+C + GH++R+C
Sbjct: 138 YRCGETGHVAINCSK-TSEVNCYRCGESGHLAREC 171
Score = 63.2 bits (152), Expect = 2e-10
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 20/89 (22%)
Frame = +3
Query: 90 NNGCYKCGENGHMARDCTQEGGNDRQERQIK--------------------CYNCNQNGH 209
+N C+KCG +GH AR+C GG R R CY C ++GH
Sbjct: 3 SNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGH 62
Query: 210 MSRECPNGQSDKKCYKCNKVGHMSRDCNE 296
++++C + CY C + GH+++DC E
Sbjct: 63 LAKDC--DLQEDACYNCGRGGHIAKDCKE 89
Score = 52.0 bits (123), Expect = 4e-07
Identities = 21/44 (47%), Positives = 29/44 (65%)
Frame = +3
Query: 18 ECYNCHETGHMSRECPKQRNQGSRNNGCYKCGENGHMARDCTQE 149
+CY C ETGH++ C K + CY+CGE+GH+AR+CT E
Sbjct: 136 KCYRCGETGHVAINCSK-----TSEVNCYRCGESGHLARECTIE 174
Score = 28.9 bits (63), Expect = 3.8
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 237 SDKKCYKCNKVGHMSRDCNE*GSIG 311
S +C+KC + GH +R+C G G
Sbjct: 2 SSNECFKCGRSGHWARECPTGGGRG 26
>sp|P36627|BYR3_SCHPO Cellular nucleic acid binding protein homolog
Length = 179
Score = 87.4 bits (215), Expect = 9e-18
Identities = 39/97 (40%), Positives = 54/97 (55%), Gaps = 3/97 (3%)
Frame = +3
Query: 21 CYNCHETGHMSRECPKQRNQGSRNNGCYKCGENGHMARDCTQEGGNDRQERQIKCYNCNQ 200
CYNC E GH +REC K + CY C + GH A +CT+ +++ CY C
Sbjct: 19 CYNCGENGHQARECTK-------GSICYNCNQTGHKASECTEP------QQEKTCYACGT 65
Query: 201 NGHMSRECP---NGQSDKKCYKCNKVGHMSRDCNE*G 302
GH+ R+CP N + +CYKC +VGH++RDC G
Sbjct: 66 AGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTNG 102
Score = 87.0 bits (214), Expect = 1e-17
Identities = 44/104 (42%), Positives = 55/104 (52%), Gaps = 7/104 (6%)
Frame = +3
Query: 6 QRSTECYNCHETGHMSRECPKQRN--QGSRNNGCYKCGENGHMARDCT----QEGGNDRQ 167
Q+ CY C GH+ R+CP N QG+ CYKCG GH+ARDC Q GG
Sbjct: 55 QQEKTCYACGTAGHLVRDCPSSPNPRQGAE---CYKCGRVGHIARDCRTNGQQSGGRFGG 111
Query: 168 ERQ-IKCYNCNQNGHMSRECPNGQSDKKCYKCNKVGHMSRDCNE 296
R + CY C GH +R+C G KCY C K+GH S +C +
Sbjct: 112 HRSNMNCYACGSYGHQARDCTMGV---KCYSCGKIGHRSFECQQ 152
Score = 87.0 bits (214), Expect = 1e-17
Identities = 40/102 (39%), Positives = 54/102 (52%), Gaps = 7/102 (6%)
Frame = +3
Query: 6 QRSTECYNCHETGHMSRECPKQRNQ------GSRNN-GCYKCGENGHMARDCTQEGGNDR 164
++ ECY C GH++R+C Q G R+N CY CG GH ARDCT
Sbjct: 80 RQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMG----- 134
Query: 165 QERQIKCYNCNQNGHMSRECPNGQSDKKCYKCNKVGHMSRDC 290
+KCY+C + GH S EC + CYKCN+ GH++ +C
Sbjct: 135 ----VKCYSCGKIGHRSFECQQASDGQLCYKCNQPGHIAVNC 172
Score = 78.6 bits (192), Expect = 4e-15
Identities = 35/76 (46%), Positives = 41/76 (53%)
Frame = +3
Query: 63 PKQRNQGSRNNGCYKCGENGHMARDCTQEGGNDRQERQIKCYNCNQNGHMSRECPNGQSD 242
P+ G R CY CGENGH AR+CT+ CYNCNQ GH + EC Q +
Sbjct: 10 PQTTRPGPR---CYNCGENGHQARECTKGS---------ICYNCNQTGHKASECTEPQQE 57
Query: 243 KKCYKCNKVGHMSRDC 290
K CY C GH+ RDC
Sbjct: 58 KTCYACGTAGHLVRDC 73
Score = 50.4 bits (119), Expect = 1e-06
Identities = 25/74 (33%), Positives = 37/74 (50%)
Frame = +3
Query: 3 NQRSTECYNCHETGHMSRECPKQRNQGSRNNGCYKCGENGHMARDCTQEGGNDRQERQIK 182
++ + CY C GH +R+C + CY CG+ GH + +C Q +D Q
Sbjct: 112 HRSNMNCYACGSYGHQARDC-------TMGVKCYSCGKIGHRSFECQQ--ASDGQ----L 158
Query: 183 CYNCNQNGHMSREC 224
CY CNQ GH++ C
Sbjct: 159 CYKCNQPGHIAVNC 172
Score = 43.9 bits (102), Expect = 1e-04
Identities = 19/42 (45%), Positives = 25/42 (59%)
Frame = +3
Query: 18 ECYNCHETGHMSRECPKQRNQGSRNNGCYKCGENGHMARDCT 143
+CY+C + GH S EC Q S CYKC + GH+A +CT
Sbjct: 136 KCYSCGKIGHRSFEC----QQASDGQLCYKCNQPGHIAVNCT 173
>sp|Q8WW36|ZCH13_HUMAN Zinc finger CCHC domain containing protein 13
Length = 166
Score = 86.3 bits (212), Expect = 2e-17
Identities = 36/92 (39%), Positives = 59/92 (64%)
Frame = +3
Query: 21 CYNCHETGHMSRECPKQRNQGSRNNGCYKCGENGHMARDCTQEGGNDRQERQIKCYNCNQ 200
CYNC +GH++++C + + R CY CG GH+ARDC DRQ+ Q KCY+C +
Sbjct: 67 CYNCGRSGHIAKDCKDPKRE--RRQHCYTCGRLGHLARDC------DRQKEQ-KCYSCGK 117
Query: 201 NGHMSRECPNGQSDKKCYKCNKVGHMSRDCNE 296
GH+ ++C + KCY+C ++GH++ +C++
Sbjct: 118 LGHIQKDC----AQVKCYRCGEIGHVAINCSK 145
Score = 82.8 bits (203), Expect = 2e-16
Identities = 36/93 (38%), Positives = 55/93 (59%)
Frame = +3
Query: 12 STECYNCHETGHMSRECPKQRNQGSRNNGCYKCGENGHMARDCTQEGGNDRQERQIKCYN 191
S CY C E+G ++ C N CY CG +GH+A+DC + ++ER+ CY
Sbjct: 44 SYTCYCCGESGRNAKNCVLL------GNICYNCGRSGHIAKDCK----DPKRERRQHCYT 93
Query: 192 CNQNGHMSRECPNGQSDKKCYKCNKVGHMSRDC 290
C + GH++R+C Q ++KCY C K+GH+ +DC
Sbjct: 94 CGRLGHLARDCDR-QKEQKCYSCGKLGHIQKDC 125
Score = 73.9 bits (180), Expect = 1e-13
Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 17/111 (15%)
Frame = +3
Query: 12 STECYNCHETGHMSRECPKQRNQGSRNNG---------------CYKCGENGHMARDCTQ 146
S + + C +GH +R CP+ G R G CY CGE+G A++C
Sbjct: 3 SKDFFACGHSGHWARGCPRGGAGGRRGGGHGRGSQCGSTTLSYTCYCCGESGRNAKNCVL 62
Query: 147 EGGNDRQERQIKCYNCNQNGHMSRECPNGQSDKK--CYKCNKVGHMSRDCN 293
G CYNC ++GH++++C + + +++ CY C ++GH++RDC+
Sbjct: 63 LGNI--------CYNCGRSGHIAKDCKDPKRERRQHCYTCGRLGHLARDCD 105
Score = 63.5 bits (153), Expect = 1e-10
Identities = 26/73 (35%), Positives = 39/73 (53%)
Frame = +3
Query: 6 QRSTECYNCHETGHMSRECPKQRNQGSRNNGCYKCGENGHMARDCTQEGGNDRQERQIKC 185
+R CY C GH++R+C +Q+ Q CY CG+ GH+ +DC Q+KC
Sbjct: 86 ERRQHCYTCGRLGHLARDCDRQKEQ-----KCYSCGKLGHIQKDCA----------QVKC 130
Query: 186 YNCNQNGHMSREC 224
Y C + GH++ C
Sbjct: 131 YRCGEIGHVAINC 143
>sp|P34689|GLH1_CAEEL ATP-dependent RNA helicase glh-1 (Germline helicase 1)
Length = 763
Score = 80.5 bits (197), Expect = 1e-15
Identities = 39/126 (30%), Positives = 58/126 (46%), Gaps = 31/126 (24%)
Frame = +3
Query: 6 QRSTECYNCHETGHMSRECPKQRNQGSRNNGCYKCGENGHMARDCTQE------------ 149
+R+ C+NC + GH S +CP+ R + CY C + GH +R+CT+E
Sbjct: 155 ERNNNCFNCQQPGHRSSDCPEPRKE-REPRVCYNCQQPGHTSRECTEERKpreGRTGGFG 213
Query: 150 --------GGND-----------RQERQIKCYNCNQNGHMSRECPNGQSDKKCYKCNKVG 272
GGND + +KC+NC GH S ECP + + C+ C + G
Sbjct: 214 GGAGFGNNGGNDGFGGDGGFGGGEERGPMKCFNCKGEGHRSAECP--EPPRGCFNCGEQG 271
Query: 273 HMSRDC 290
H S +C
Sbjct: 272 HRSNEC 277
Score = 57.8 bits (138), Expect = 8e-09
Identities = 35/110 (31%), Positives = 45/110 (40%), Gaps = 38/110 (34%)
Frame = +3
Query: 81 GSRNNGCYKCGENGHMARDCTQEGGNDRQERQIK-CYNCNQNGHMSRECP---------- 227
G RNN C+ C + GH + DC + R+ER+ + CYNC Q GH SREC
Sbjct: 154 GERNNNCFNCQQPGHRSSDCPE----PRKEREPRVCYNCQQPGHTSRECTEERKpreGRT 209
Query: 228 -----------NGQSD----------------KKCYKCNKVGHMSRDCNE 296
NG +D KC+ C GH S +C E
Sbjct: 210 GGFGGGAGFGNNGGNDGFGGDGGFGGGEERGPMKCFNCKGEGHRSAECPE 259
Score = 57.0 bits (136), Expect = 1e-08
Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Frame = +3
Query: 147 EGGNDRQERQIKCYNCNQNGHMSRECPNGQSDKK---CYKCNKVGHMSRDCNE 296
EGG+ ER C+NC Q GH S +CP + +++ CY C + GH SR+C E
Sbjct: 148 EGGHGGGERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTE 200
>sp|Q966L9|GLH2_CAEEL ATP-dependent RNA helicase glh-2 (Germline helicase 2)
Length = 974
Score = 79.7 bits (195), Expect = 2e-15
Identities = 40/124 (32%), Positives = 59/124 (47%), Gaps = 29/124 (23%)
Frame = +3
Query: 6 QRSTECYNCHETGHMSRECPKQRNQGSRNNGCYKCGENGHMARDCTQE------------ 149
+R+ C+NC + GH S +CP+ + + CY C + GH +RDC +E
Sbjct: 368 ERNNNCFNCQQPGHRSNDCPEPKKE-REPRVCYNCQQPGHNSRDCPEERKpreGRNGFTS 426
Query: 150 ---GGND-------------RQER-QIKCYNCNQNGHMSRECPNGQSDKKCYKCNKVGHM 278
GGND +ER +KC+NC GH S ECP + + C+ C + GH
Sbjct: 427 GFGGGNDGGFGGGNAEGFGNNEERGPMKCFNCKGEGHRSAECP--EPPRGCFNCGEQGHR 484
Query: 279 SRDC 290
S +C
Sbjct: 485 SNEC 488
Score = 75.9 bits (185), Expect = 3e-14
Identities = 43/130 (33%), Positives = 55/130 (42%), Gaps = 38/130 (29%)
Frame = +3
Query: 21 CYNCHETGHMSRECPKQRNQ--------------------------------GSRNNGCY 104
CYNC + GH SR+CP++R GS NNG
Sbjct: 284 CYNCQQPGHNSRDCPEERKpreGRNGFTGGSSGFGGGNGGGTGFDSGLTNGFGSGNNGES 343
Query: 105 KCGENGHMARD---CTQEGGNDRQERQIKCYNCNQNGHMSRECPNGQSDKK---CYKCNK 266
G G + GG DR ER C+NC Q GH S +CP + +++ CY C +
Sbjct: 344 GFGSGGFGGNSNGFGSGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQ 403
Query: 267 VGHMSRDCNE 296
GH SRDC E
Sbjct: 404 PGHNSRDCPE 413
Score = 64.7 bits (156), Expect = 6e-11
Identities = 35/93 (37%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Frame = +3
Query: 27 NCHETGHMSRECPKQRNQGSRNNGCYKCGENGHMARDCTQEGGNDRQERQIKCYNCNQNG 206
N HE+G K G N+G G G+ + GG DR ER C+NC Q G
Sbjct: 210 NNHESGFGGG---KSGGFGGGNSGGSGFGSGGNSNGFGSGGGGQDRGERNNNCFNCQQPG 266
Query: 207 HMSRECPNGQSDKK---CYKCNKVGHMSRDCNE 296
H S +CP + +++ CY C + GH SRDC E
Sbjct: 267 HRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 299
>sp|Q9HFF2|YL92_SCHPO Hypothetical protein C683.02c in chromosome I
Length = 218
Score = 67.8 bits (164), Expect = 7e-12
Identities = 33/105 (31%), Positives = 60/105 (57%), Gaps = 7/105 (6%)
Frame = +3
Query: 3 NQRSTE--CYNCHETGHMSRECPKQRNQGSRNNGCYKCGENGHMARDCTQEGGNDRQERQ 176
NQR+ + C+ C + GH+ ++CP+ ++ S C++CG H C+++G +
Sbjct: 71 NQRNRDKFCFACRQQGHIVQDCPEAKDNVSI---CFRCGSKEHSLNACSKKG----PLKF 123
Query: 177 IKCYNCNQNGHMSREC---PNGQSDKK--CYKCNKVGHMSRDCNE 296
KC+ C++NGH+S +C P G K C C+ V H+++DC++
Sbjct: 124 AKCFICHENGHLSGQCEQNPKGLYPKGGCCKFCSSVHHLAKDCDQ 168
Score = 42.0 bits (97), Expect = 4e-04
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 18 ECYNCHETGHMSRECPKQRNQGSRNNGCYK-CGENGHMARDCTQEGGND 161
+C+ CHE GH+S +C + GC K C H+A+DC Q +D
Sbjct: 125 KCFICHENGHLSGQCEQNPKGLYPKGGCCKFCSSVHHLAKDCDQVNKDD 173
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,193,571
Number of Sequences: 369166
Number of extensions: 877203
Number of successful extensions: 4550
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3839
length of database: 68,354,980
effective HSP length: 85
effective length of database: 52,652,505
effective search space used: 1684880160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)