Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_M18
(471 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q02837|ENV_SIVG1 Envelope polyprotein GP160 precursor [C... 32 0.73
sp|P07049|CPPB_NEIGO Cryptic plasmid protein B 32 0.73
sp|P20845|AMY_BACME Alpha-amylase precursor (1,4-alpha-D-gl... 29 4.7
sp|O70138|MMP8_MOUSE Neutrophil collagenase precursor (Matr... 29 6.2
>sp|Q02837|ENV_SIVG1 Envelope polyprotein GP160 precursor [Contains: Exterior membrane
glycoprotein (GP120); Transmembrane glycoprotein (GP41)]
Length = 854
Score = 32.0 bits (71), Expect = 0.73
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Frame = +1
Query: 184 KNLVVAFAIVFVIPGLFITIYACKQIFDVWKNSFAEAVRPRSPSNQW-TGNAYSEPH--Y 354
K L++A I I L++T++ VWKNS +A +N W T N + H
Sbjct: 7 KILIIAIGISIGIGNLYVTVFYG---IPVWKNSTVQAFCMTPNTNMWATTNCIPDDHDNT 63
Query: 355 ETPYSISE 378
E P +I+E
Sbjct: 64 EVPLNITE 71
>sp|P07049|CPPB_NEIGO Cryptic plasmid protein B
Length = 213
Score = 32.0 bits (71), Expect = 0.73
Identities = 19/48 (39%), Positives = 26/48 (54%)
Frame = +1
Query: 157 RPYIWDYTDKNLVVAFAIVFVIPGLFITIYACKQIFDVWKNSFAEAVR 300
+PY+W L ++ A + VI GLFI I++ K D K AEA R
Sbjct: 65 KPYLWSL----LGISAAGLIVIAGLFIAIWSVKNELDDLKQQRAEAER 108
>sp|P20845|AMY_BACME Alpha-amylase precursor (1,4-alpha-D-glucan glucanohydrolase)
Length = 520
Score = 29.3 bits (64), Expect = 4.7
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +1
Query: 268 VWKNSFAEAVRPRSPSNQWTGNAYSEPHYETPY 366
+W N F +A++ +P+ TG + +P PY
Sbjct: 252 LWWNEFRDAMKKENPNVYLTGEVWDQPEVVAPY 284
>sp|O70138|MMP8_MOUSE Neutrophil collagenase precursor (Matrix metalloproteinase-8)
(MMP-8) (Collagenase 2)
Length = 465
Score = 28.9 bits (63), Expect = 6.2
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 1 AENYFRKRYKILSNLMNSSQSTLIASKKWK 90
AENY RK Y + SN SS++ + ++K K
Sbjct: 35 AENYLRKFYNLPSNQFRSSRNATMVAEKLK 64
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,417,937
Number of Sequences: 369166
Number of extensions: 667507
Number of successful extensions: 1500
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1500
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2733320975
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)