Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_M16
(827 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9UL40|ZN346_HUMAN Zinc finger protein 346 (Just another... 50 8e-06
sp|Q9R0B7|ZN346_MOUSE Zinc finger protein 346 (Just another... 47 8e-05
sp|Q5R4W8|ZN346_PONPY Zinc finger protein 346 47 8e-05
sp|Q96PM9|ZN385_HUMAN Zinc finger protein 385 (Hematopoieti... 41 0.004
sp|Q569K4|ZN533_HUMAN Zinc finger protein 533 40 0.006
sp|Q6PBT9|ZN533_BRARE Zinc finger protein 533 40 0.010
sp|Q8BXJ8|ZN533_MOUSE Zinc finger protein 533 37 0.051
sp|Q15911|ATBF1_HUMAN Alpha-fetoprotein enhancer binding pr... 37 0.051
sp|Q61329|ATBF1_MOUSE Alpha-fetoprotein enhancer binding pr... 37 0.051
sp|P10583|GLNA_AZOBR Glutamine synthetase (Glutamate--ammon... 37 0.051
>sp|Q9UL40|ZN346_HUMAN Zinc finger protein 346 (Just another zinc finger protein)
Length = 294
Score = 50.1 bits (118), Expect = 8e-06
Identities = 42/152 (27%), Positives = 62/152 (40%), Gaps = 16/152 (10%)
Frame = +1
Query: 130 CRICESPFSSKVAALQHYSGKKHKKIAENWSSYNPVKPIDTK-----DDLRCDVCRIVGE 294
C IC FSS V A HY GK H K + V+ + D C +C
Sbjct: 136 CPICNMTFSSPVVAQSHYLGKTHAKNLKLKQQSTKVEALHQNREMIDPDKFCSLCHATFN 195
Query: 295 STVQMETHYAGKKH-----QLKMKAFLERVNAGAIAPPMSSRGF-CD-----FNNVEREE 441
V + HY GKKH +LK+ A R+ A+ + +G+ C N++E+ +
Sbjct: 196 DPVMAQQHYVGKKHRKQETKLKLMARYGRLADPAVTDFPAGKGYPCKTCKIVLNSIEQYQ 255
Query: 442 ANPVDPTRFIQENILPKNLTGSFLNQPDPEPP 537
A+ + F +N PK + S P P
Sbjct: 256 AH---VSGFKHKNQSPKTVASSLGQIPMQRQP 284
Score = 46.6 bits (109), Expect = 8e-05
Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Frame = +1
Query: 124 EFCRICESPFSSKVAALQHYSGKKHKK-------IAENWSSYNP-VKPIDTKDDLRCDVC 279
+FC +C + F+ V A QHY GKKH+K +A +P V C C
Sbjct: 185 KFCSLCHATFNDPVMAQQHYVGKKHRKQETKLKLMARYGRLADPAVTDFPAGKGYPCKTC 244
Query: 280 RIVGESTVQMETHYAGKKHQ 339
+IV S Q + H +G KH+
Sbjct: 245 KIVLNSIEQYQAHVSGFKHK 264
Score = 37.4 bits (85), Expect = 0.051
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 17/99 (17%)
Frame = +1
Query: 130 CRICESPFSSKVAALQHYSGKKHKKIAENWSSYNPVKPID--------------TKDDLR 267
C++C + S+ L HY KKH + + + + ++ + +KD +
Sbjct: 75 CKVCCALLISESQKLAHYQSKKHANKVKRYLAIHGMETLKGETKKLDSDQKSSRSKDKNQ 134
Query: 268 -CDVCRIVGESTVQMETHYAGKKH--QLKMKAFLERVNA 375
C +C + S V ++HY GK H LK+K +V A
Sbjct: 135 CCPICNMTFSSPVVAQSHYLGKTHAKNLKLKQQSTKVEA 173
>sp|Q9R0B7|ZN346_MOUSE Zinc finger protein 346 (Just another zinc finger protein)
Length = 294
Score = 46.6 bits (109), Expect = 8e-05
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Frame = +1
Query: 124 EFCRICESPFSSKVAALQHYSGKKHKK-------IAENWSSYNP-VKPIDTKDDLRCDVC 279
+FC +C S F+ A QHY GK+H+K +A +P V + C C
Sbjct: 185 KFCSLCHSTFNDPAMAQQHYMGKRHRKQETKLKLMAHYGRLADPAVSDLPAGKGYPCKTC 244
Query: 280 RIVGESTVQMETHYAGKKHQ 339
+IV S Q + H +G KH+
Sbjct: 245 KIVLNSIEQYQAHVSGFKHK 264
Score = 43.9 bits (102), Expect = 5e-04
Identities = 44/170 (25%), Positives = 66/170 (38%), Gaps = 35/170 (20%)
Frame = +1
Query: 94 INEDVHRLDLE-----------FCRICESPFSSKVAALQHYSGKKHKK------------ 204
I DV RLD + C IC FSS A HY GK H K
Sbjct: 113 IKGDVKRLDSDQKSSRSKDKNHCCPICNMTFSSPAVAQSHYLGKTHAKSLKLKQQSTKGA 172
Query: 205 -IAENWSSYNPVKPIDTKDDLRCDVCRIVGESTVQMETHYAGKKH-----QLKMKAFLER 366
+ +N +P D C +C + HY GK+H +LK+ A R
Sbjct: 173 ALQQNREMLDP--------DKFCSLCHSTFNDPAMAQQHYMGKRHRKQETKLKLMAHYGR 224
Query: 367 VNAGAIAPPMSSRGF-CD-----FNNVEREEANPVDPTRFIQENILPKNL 498
+ A++ + +G+ C N++E+ +A+ + F +N PK L
Sbjct: 225 LADPAVSDLPAGKGYPCKTCKIVLNSIEQYQAH---VSGFKHKNQSPKTL 271
Score = 37.0 bits (84), Expect = 0.066
Identities = 22/102 (21%), Positives = 41/102 (40%), Gaps = 17/102 (16%)
Frame = +1
Query: 130 CRICESPFSSKVAALQHYSGKKHKKIAENWSSYNPVKPIDTKDDLR-------------- 267
C++C + S+ L HY KKH + + + + ++ I K D++
Sbjct: 75 CKVCCAMLISESQKLAHYQSKKHANKVKRYLAIHGMETI--KGDVKRLDSDQKSSRSKDK 132
Query: 268 ---CDVCRIVGESTVQMETHYAGKKHQLKMKAFLERVNAGAI 384
C +C + S ++HY GK H +K + A+
Sbjct: 133 NHCCPICNMTFSSPAVAQSHYLGKTHAKSLKLKQQSTKGAAL 174
>sp|Q5R4W8|ZN346_PONPY Zinc finger protein 346
Length = 310
Score = 46.6 bits (109), Expect = 8e-05
Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Frame = +1
Query: 124 EFCRICESPFSSKVAALQHYSGKKHKK-------IAENWSSYNP-VKPIDTKDDLRCDVC 279
+FC +C + F+ V A QHY GKKH+K +A +P V C C
Sbjct: 201 KFCSLCHATFNDPVMAQQHYVGKKHRKQETKLKLMARYGRLADPAVTDFPAGKGYPCKTC 260
Query: 280 RIVGESTVQMETHYAGKKHQ 339
+IV S Q + H +G KH+
Sbjct: 261 KIVLNSIEQYQAHVSGFKHK 280
Score = 45.1 bits (105), Expect = 2e-04
Identities = 44/170 (25%), Positives = 65/170 (38%), Gaps = 34/170 (20%)
Frame = +1
Query: 130 CRICESPFSSKVAALQHYSGKKHKK-----------------------IAENWSSYNPVK 240
C IC FSS V A HY GK H K +A + + +
Sbjct: 136 CPICNMTFSSPVVAQSHYLGKTHAKNLKLKQQSTKVEALSKRLTNPFLVASTLALHQNRE 195
Query: 241 PIDTKDDLRCDVCRIVGESTVQMETHYAGKKH-----QLKMKAFLERVNAGAIAPPMSSR 405
ID D C +C V + HY GKKH +LK+ A R+ A+ + +
Sbjct: 196 MID--PDKFCSLCHATFNDPVMAQQHYVGKKHRKQETKLKLMARYGRLADPAVTDFPAGK 253
Query: 406 GF-CD-----FNNVEREEANPVDPTRFIQENILPKNLTGSFLNQPDPEPP 537
G+ C N++E+ +A+ + F +N PK + S P P
Sbjct: 254 GYPCKTCKIVLNSIEQYQAH---VSGFKHKNQSPKTVASSLGQIPMQRQP 300
Score = 39.3 bits (90), Expect = 0.013
Identities = 25/128 (19%), Positives = 52/128 (40%), Gaps = 15/128 (11%)
Frame = +1
Query: 130 CRICESPFSSKVAALQHYSGKKHKKIAENWSSYNPVKPID--------------TKDDLR 267
C++C + S+ L HY KKH + + + + ++ + +KD +
Sbjct: 75 CKVCCALLISESQKLAHYQSKKHANKVKRYLAIHGMETLKGETKKLDSDQKSSRSKDKNQ 134
Query: 268 -CDVCRIVGESTVQMETHYAGKKHQLKMKAFLERVNAGAIAPPMSSRGFCDFNNVEREEA 444
C +C + S V ++HY GK H +K + A++ +++ +
Sbjct: 135 CCPICNMTFSSPVVAQSHYLGKTHAKNLKLKQQSTKVEALSKRLTNPFLVASTLALHQNR 194
Query: 445 NPVDPTRF 468
+DP +F
Sbjct: 195 EMIDPDKF 202
>sp|Q96PM9|ZN385_HUMAN Zinc finger protein 385 (Hematopoietic zinc finger protein)
(Retinal zinc finger protein)
Length = 366
Score = 41.2 bits (95), Expect = 0.004
Identities = 46/188 (24%), Positives = 66/188 (35%), Gaps = 14/188 (7%)
Frame = +1
Query: 1 GVSKSGEPNAPSTAPTKSSKVPFRELVKKFEINEDVHRLDLEFCRICESPFSSKVAALQH 180
GV+K GE P+ A E K+ L +C +C+ +S H
Sbjct: 152 GVTK-GEGGTPAPASLPGGSKEEEEKAKR-----------LLYCALCKVAVNSLSQLEAH 199
Query: 181 YSGKKHKKIAENWSSYNPVK------------PIDTKDD--LRCDVCRIVGESTVQMETH 318
G KHK I E S P+K P D C++C + S VQ++ H
Sbjct: 200 NKGTKHKTILEARSGLGPIKAYPRLGPPTPGEPEAPAQDRTFHCEICNVKVNSEVQLKQH 259
Query: 319 YAGKKHQLKMKAFLERVNAGAIAPPMSSRGFCDFNNVEREEANPVDPTRFIQENILPKNL 498
+ ++H R P+ SR + R F +E LPK+L
Sbjct: 260 ISSRRH---------RDGVAGKPNPLLSR-----HKKSRGAGELAGTLTFSKE--LPKSL 303
Query: 499 TGSFLNQP 522
G L P
Sbjct: 304 AGGLLPSP 311
Score = 30.4 bits (67), Expect = 6.2
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 262 LRCDVCRIVGESTVQMETHYAGKKHQLKMK 351
+ C++C+I S Q E HY G +H ++K
Sbjct: 54 ISCNICQIRFNSQSQAEAHYKGNRHARRVK 83
>sp|Q569K4|ZN533_HUMAN Zinc finger protein 533
Length = 471
Score = 40.4 bits (93), Expect = 0.006
Identities = 37/184 (20%), Positives = 74/184 (40%), Gaps = 17/184 (9%)
Frame = +1
Query: 22 PNAPSTAPTKSSKVPFRELVKKFEINEDVHRLDLEFCRICESPFSSKVAALQHYSGKKHK 201
P +T+P+KS+ +V+ +E+ L +C +C+ +S H +G KHK
Sbjct: 255 PPGAATSPSKSTNGAPGTVVE----SEEEKAKKLLYCSLCKVAVNSLSQLEAHNTGSKHK 310
Query: 202 KIAENWSSYNPVKPID-----------------TKDDLRCDVCRIVGESTVQMETHYAGK 330
+ E + P+K C++C + S +Q++ H + +
Sbjct: 311 TMVEARNGAGPIKSYPRPGSRLKMQNGSKGSGLQNKTFHCEICDVHVNSEIQLKQHISSR 370
Query: 331 KHQLKMKAFLERVNAGAIAPPMSSRGFCDFNNVEREEANPVDPTRFIQENILPKNLTGSF 510
+H+ +RV + P S +N ++R + F ++ + P L +F
Sbjct: 371 RHK-------DRVAGKPLKPKYS-----PYNKLQRSPSILAAKLAFQKDMMKP--LAPAF 416
Query: 511 LNQP 522
L+ P
Sbjct: 417 LSSP 420
Score = 37.0 bits (84), Expect = 0.066
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = +1
Query: 241 PIDTKDDLRCDVCRIVGESTVQMETHYAGKKHQLKMKAFLERVNAGAIAPPMSS 402
P K + C+VC++ S Q E HY G KH K+KA N + P S
Sbjct: 150 PPKKKQVISCNVCQLRFNSDSQAEAHYKGSKHAKKVKALDATKNKPKMVPSKDS 203
Score = 35.8 bits (81), Expect = 0.15
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Frame = +1
Query: 130 CRICESPFSSKVAALQHYSGKKH-KKIAENWSSYNPVKPIDTKDDLR----CDVCRIVGE 294
C +C+ F+S A HY G KH KK+ ++ N K + +KD + C + I G
Sbjct: 159 CNVCQLRFNSDSQAEAHYKGSKHAKKVKALDATKNKPKMVPSKDSAKANPSCSITPITGN 218
Query: 295 STVQME 312
++ + E
Sbjct: 219 NSDKSE 224
Score = 32.7 bits (73), Expect = 1.3
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +1
Query: 91 EINEDVHRLDLEFCRICESPFSSKVAALQHYSGKKHKKIAENWSSYNPVKP 243
+++++ ++ FC +C +S A H +GK H+K + S P P
Sbjct: 23 QLSKEKKKILFSFCEVCNIQLNSAAQAQVHSNGKSHRKRVKQLSDGQPPPP 73
>sp|Q6PBT9|ZN533_BRARE Zinc finger protein 533
Length = 492
Score = 39.7 bits (91), Expect = 0.010
Identities = 40/192 (20%), Positives = 74/192 (38%), Gaps = 19/192 (9%)
Frame = +1
Query: 4 VSKSGEPNAPSTAPTKSSKVPFRELVKKFEINEDVHRLDLEFCRICESPFSSKVAALQHY 183
+ + +P A TAP++ S E KK L +C +C+ +S H
Sbjct: 277 LKNTSKPAALPTAPSEPSVESEEEKAKK-----------LLYCSLCKVAVNSLSQLEAHN 325
Query: 184 SGKKHKKIAENWSSYNPVKPID-------------------TKDDLRCDVCRIVGESTVQ 306
+G KHK + E + P+K C++C + S +Q
Sbjct: 326 TGSKHKTMLEARNGAGPIKAYPRPGSKLKVQATQLNKGSGLQNKTFHCEICDVHVNSEIQ 385
Query: 307 METHYAGKKHQLKMKAFLERVNAGAIAPPMSSRGFCDFNNVEREEANPVDPTRFIQENIL 486
++ H + ++H+ +RV AG P + +N +R ++ + +N L
Sbjct: 386 LKQHISSRRHK-------DRV-AGKPTKPK----YSPYNKQQRSSSSLA--AKLALQNDL 431
Query: 487 PKNLTGSFLNQP 522
K ++ +FL P
Sbjct: 432 VKPISPAFLPSP 443
Score = 35.4 bits (80), Expect = 0.19
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 241 PIDTKDDLRCDVCRIVGESTVQMETHYAGKKHQLKMKA 354
P K + C++C++ S Q E HY G KH K+KA
Sbjct: 136 PPKKKQVISCNICQLRFNSDSQAEAHYKGSKHAKKLKA 173
Score = 32.3 bits (72), Expect = 1.6
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 268 CDVCRIVGESTVQMETHYAGKKHQLKMK 351
CDVC I S Q + HY GK H ++K
Sbjct: 15 CDVCNIQLHSAAQAQVHYNGKSHLKRVK 42
Score = 30.4 bits (67), Expect = 6.2
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +1
Query: 130 CRICESPFSSKVAALQHYSGKKH-KKIAENWSSYNPVKPIDTKD 258
C IC+ F+S A HY G KH KK+ S N K +D
Sbjct: 145 CNICQLRFNSDSQAEAHYKGSKHAKKLKAQESPKNKQKSAVAQD 188
>sp|Q8BXJ8|ZN533_MOUSE Zinc finger protein 533
Length = 482
Score = 37.4 bits (85), Expect = 0.051
Identities = 17/67 (25%), Positives = 28/67 (41%)
Frame = +1
Query: 91 EINEDVHRLDLEFCRICESPFSSKVAALQHYSGKKHKKIAENWSSYNPVKPIDTKDDLRC 270
+ +++ ++ FC +C +S A HY GK H+K + S P P+ L
Sbjct: 23 QFSKEKKKILFSFCEVCNIQLNSAAQAQVHYDGKSHRKRVKQLSDGQPPPPVQGSVPLLA 82
Query: 271 DVCRIVG 291
C G
Sbjct: 83 GPCPCPG 89
Score = 37.4 bits (85), Expect = 0.051
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = +1
Query: 241 PIDTKDDLRCDVCRIVGESTVQMETHYAGKKHQLKMKAFLERVNAGAIAPPMSS 402
P K + C+VC++ S Q E HY G KH K+KA N + P S
Sbjct: 162 PPKKKQVISCNVCQLRFNSDSQAEAHYKGSKHAKKVKALEATKNKPKMVPSKDS 215
Score = 37.4 bits (85), Expect = 0.051
Identities = 31/159 (19%), Positives = 62/159 (38%), Gaps = 17/159 (10%)
Frame = +1
Query: 97 NEDVHRLDLEFCRICESPFSSKVAALQHYSGKKHKKIAENWSSYNPVKPIDTKDD----- 261
+E+ L +C +C+ +S H +G KHK + E + P+K
Sbjct: 288 SEEEKAKKLLYCSLCKVAVNSLSQLEAHNTGSKHKTMVEARNGAGPIKSYPRPGSRLKVQ 347
Query: 262 ------------LRCDVCRIVGESTVQMETHYAGKKHQLKMKAFLERVNAGAIAPPMSSR 405
C++C + S +Q++ H + ++H+ +RV + P S
Sbjct: 348 NGSKGSGLQNKMFHCEICDVHVNSEIQLKQHISSRRHK-------DRVAGKPLKPKYS-- 398
Query: 406 GFCDFNNVEREEANPVDPTRFIQENILPKNLTGSFLNQP 522
+N ++R + + + + L K L +FL+ P
Sbjct: 399 ---PYNKLQRSPS--ILAAKLAFQKDLMKPLAPTFLSSP 432
Score = 34.3 bits (77), Expect = 0.43
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Frame = +1
Query: 130 CRICESPFSSKVAALQHYSGKKH-KKIAENWSSYNPVKPIDTKDDLR----CDVCRIVGE 294
C +C+ F+S A HY G KH KK+ ++ N K + +KD + C + G+
Sbjct: 171 CNVCQLRFNSDSQAEAHYKGSKHAKKVKALEATKNKPKMVPSKDSAKANPSCSIRPGTGD 230
Query: 295 STVQME 312
S+ + E
Sbjct: 231 SSDKSE 236
Score = 32.7 bits (73), Expect = 1.3
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +1
Query: 268 CDVCRIVGESTVQMETHYAGKKHQLKMKAFLERVNAGAIAPPM 396
C+VC I S Q + HY GK H+ ++K +++ G PP+
Sbjct: 36 CEVCNIQLNSAAQAQVHYDGKSHRKRVK----QLSDGQPPPPV 74
>sp|Q15911|ATBF1_HUMAN Alpha-fetoprotein enhancer binding protein (AT motif-binding factor)
(AT-binding transcription factor 1)
Length = 3703
Score = 37.4 bits (85), Expect = 0.051
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Frame = +1
Query: 130 CRICESPFSSKVAALQHYSGKKH---KKIAENWSSYNPVKPIDTKDD--LRCDVCRIVGE 294
C +C+ F+ K L HY+ H K A S+ +P + D+ +C+ C +
Sbjct: 1547 CTVCKESFTQKNILLVHYNSVSHLHKLKRALQESATGQPEPTSSPDNKPFKCNTCNVAYS 1606
Query: 295 STVQMETHYAGKKHQLKMKA 354
+ +E H HQ K +A
Sbjct: 1607 QSSTLEIHMRSVLHQTKARA 1626
>sp|Q61329|ATBF1_MOUSE Alpha-fetoprotein enhancer binding protein (AT motif-binding factor)
(AT-binding transcription factor 1)
Length = 3726
Score = 37.4 bits (85), Expect = 0.051
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Frame = +1
Query: 130 CRICESPFSSKVAALQHYSGKKH---KKIAENWSSYNPVKPIDTKDD--LRCDVCRIVGE 294
C +C+ F+ K L HY+ H K A S+ +P + D+ +C+ C +
Sbjct: 1557 CTVCKESFTQKNILLVHYNSVSHLHKLKRALQESATGQPEPTSSPDNKPFKCNTCNVAYS 1616
Query: 295 STVQMETHYAGKKHQLKMKA 354
+ +E H HQ K +A
Sbjct: 1617 QSSTLEIHMRSVLHQTKARA 1636
Score = 31.2 bits (69), Expect = 3.6
Identities = 18/65 (27%), Positives = 26/65 (40%)
Frame = +1
Query: 154 SSKVAALQHYSGKKHKKIAENWSSYNPVKPIDTKDDLRCDVCRIVGESTVQMETHYAGKK 333
S+ AA + I +W + +P KP TK RC+VC + H +K
Sbjct: 770 SAGAAAAAAAAAAAAANIGSSWGAPSPTKP-KTKPTWRCEVCDYETNVARNLRIHMTSEK 828
Query: 334 HQLKM 348
H M
Sbjct: 829 HMHNM 833
>sp|P10583|GLNA_AZOBR Glutamine synthetase (Glutamate--ammonia ligase)
Length = 468
Score = 37.4 bits (85), Expect = 0.051
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 7/102 (6%)
Frame = +1
Query: 67 FRELVKKFEINEDVHRLDLEFCRICESPFSS----KVAALQHYSGKKHKKIAENWSSYNP 234
F ++ K E+N+ + D E E P++S + L H G K Y P
Sbjct: 137 FDDVKFKVEMNKVSYEFDSE-----EGPYTSDKDYEDGNLGHRPGVK--------GGYFP 183
Query: 235 VKPIDTKDDLRCDVCRIVGESTVQMETHY---AGKKHQLKMK 351
V P+D+ DLR ++ ++ E V +E H+ A +H+L +K
Sbjct: 184 VAPVDSGSDLRAEMLSVLAEMGVPVEKHHHEVAASQHELGIK 225
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.315 0.135 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,328,714
Number of Sequences: 369166
Number of extensions: 2161006
Number of successful extensions: 4936
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4880
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8004331590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)